Wall clock time and date at job start Tue Mar 31 2020 15:35:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.30835 * 125.89736 * 2 1 4 4 N 1.40087 * 108.20768 * 180.02562 * 3 2 1 5 5 H 0.96992 * 126.04042 * 179.97438 * 4 3 2 6 6 C 1.34952 * 107.92256 * 0.02562 * 4 3 2 7 7 C 1.50695 * 126.12676 * 180.02562 * 6 4 3 8 8 C 1.35321 * 107.74735 * 359.97438 * 6 4 3 9 9 C 1.50694 * 126.04167 * 179.97438 * 8 6 4 10 10 H 1.09007 * 109.47030 * 0.02562 * 9 8 6 11 11 C 1.52997 * 109.47366 * 240.00200 * 9 8 6 12 12 C 1.50701 * 109.46871 * 120.00032 * 9 8 6 13 13 O 1.20825 * 120.00217 * 0.02562 * 12 9 8 14 14 O 1.34234 * 119.99528 * 180.02562 * 12 9 8 15 15 C 1.45203 * 116.99553 * 180.02562 * 14 12 9 16 16 C 1.50699 * 109.47123 * 179.97438 * 15 14 12 17 17 C 1.38638 * 119.75110 * 269.73193 * 16 15 14 18 18 C 1.37619 * 120.24672 * 179.72145 * 17 16 15 19 19 C 1.40704 * 119.74520 * 0.56628 * 18 17 16 20 20 C 1.41398 * 120.24400 * 179.68541 * 19 18 17 21 21 H 1.08009 * 119.99993 * 204.40847 * 20 19 18 22 22 C 1.39943 * 120.00329 * 24.40289 * 20 19 18 23 23 N 1.30826 * 119.99491 * 17.85359 * 22 20 19 24 24 Si 1.86799 * 120.00290 * 197.84913 * 22 20 19 25 25 H 1.48501 * 109.46838 * 90.00557 * 24 22 20 26 26 H 1.48500 * 109.46931 * 209.99937 * 24 22 20 27 27 H 1.48497 * 109.47176 * 329.99933 * 24 22 20 28 28 C 1.40720 * 119.51409 * 359.70652 * 19 18 17 29 29 C 1.37612 * 119.74241 * 359.97438 * 28 19 18 30 30 H 1.08997 * 109.47196 * 90.02219 * 1 2 3 31 31 H 1.09005 * 109.46969 * 210.01929 * 1 2 3 32 32 H 1.08999 * 109.47470 * 330.02336 * 1 2 3 33 33 H 1.09004 * 109.47315 * 89.97424 * 7 6 4 34 34 H 1.08998 * 109.47451 * 209.97146 * 7 6 4 35 35 H 1.08994 * 109.47216 * 329.97406 * 7 6 4 36 36 H 1.09000 * 109.47312 * 179.97438 * 11 9 8 37 37 H 1.08997 * 109.47097 * 300.00155 * 11 9 8 38 38 H 1.09006 * 109.46877 * 60.00477 * 11 9 8 39 39 H 1.08996 * 109.47694 * 300.00015 * 15 14 12 40 40 H 1.09000 * 109.47068 * 60.00385 * 15 14 12 41 41 H 1.07998 * 119.87067 * 359.97311 * 17 16 15 42 42 H 1.08004 * 120.12496 * 180.28015 * 18 17 16 43 43 H 0.97003 * 119.99921 * 180.02562 * 23 22 20 44 44 H 1.08002 * 120.12472 * 179.97438 * 28 19 18 45 45 H 1.07999 * 119.87506 * 179.97438 * 29 28 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2741 1.0599 0.0000 4 7 3.6088 0.6342 -0.0006 5 1 4.3908 1.2080 -0.0011 6 6 3.6143 -0.7153 -0.0015 7 6 4.8351 -1.5988 -0.0019 8 6 2.3271 -1.1331 -0.0009 9 6 1.8599 -2.5657 -0.0022 10 1 2.7244 -3.2298 -0.0031 11 6 1.0151 -2.8257 -1.2510 12 6 1.0298 -2.8244 1.2287 13 8 0.8369 -1.9363 2.0249 14 8 0.5046 -4.0414 1.4404 15 6 -0.2844 -4.2181 2.6465 16 6 -0.7884 -5.6368 2.7137 17 6 -2.0123 -5.9596 2.1481 18 6 -2.4798 -7.2530 2.1986 19 6 -1.7159 -8.2469 2.8377 20 6 -2.1892 -9.5778 2.9015 21 1 -1.8454 -10.2361 3.6858 22 6 -3.1030 -10.0420 1.9487 23 7 -3.2568 -9.3966 0.8212 24 14 -4.1029 -11.5832 2.2867 25 1 -5.3732 -11.2112 2.9601 26 1 -4.4048 -12.2685 1.0044 27 1 -3.3259 -12.4949 3.1643 28 6 -0.4777 -7.9065 3.4133 29 6 -0.0270 -6.6081 3.3451 30 1 -0.3633 -0.0004 -1.0276 31 1 -0.3633 -0.8899 0.5142 32 1 -0.3634 0.8902 0.5135 33 1 5.1295 -1.8122 1.0257 34 1 4.6076 -2.5327 -0.5159 35 1 5.6511 -1.0908 -0.5155 36 1 0.6776 -3.8621 -1.2521 37 1 0.1508 -2.1617 -1.2496 38 1 1.6157 -2.6387 -2.1413 39 1 0.3344 -4.0103 3.5193 40 1 -1.1316 -3.5324 2.6301 41 1 -2.5992 -5.1939 1.6626 42 1 -3.4314 -7.5032 1.7534 43 1 -3.8905 -9.7181 0.1608 44 1 0.1165 -8.6615 3.9066 45 1 0.9228 -6.3445 3.7864 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000786328187.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:35:16 Heat of formation + Delta-G solvation = -28.720845 kcal Electronic energy + Delta-G solvation = -27051.485996 eV Core-core repulsion = 23226.980274 eV Total energy + Delta-G solvation = -3824.505722 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.57155 -41.22921 -39.45252 -37.46778 -35.66341 -35.44919 -34.30532 -32.55872 -31.30167 -31.17889 -29.05374 -28.91622 -27.69866 -26.08169 -24.98567 -22.92720 -22.39327 -21.74970 -21.18089 -20.13112 -19.24469 -18.71275 -18.17350 -17.44889 -17.16532 -16.99262 -16.16157 -15.81067 -15.69008 -15.43997 -15.21285 -14.68792 -14.46873 -14.26295 -14.18129 -13.84075 -13.79630 -13.67923 -13.54866 -13.48345 -13.28988 -13.15978 -13.01630 -12.80616 -12.65792 -12.60250 -12.49554 -12.31322 -12.06322 -11.61928 -11.51235 -11.39816 -11.25660 -11.18200 -11.00802 -10.20154 -9.45762 -9.39077 -9.28799 -8.66363 -6.37084 0.74663 0.87999 1.14051 1.31611 1.39705 1.44004 1.53492 1.60033 1.95002 2.18053 2.22167 2.76547 3.57850 3.67852 3.71537 3.84120 4.12848 4.14377 4.16966 4.20187 4.21840 4.34824 4.51336 4.52165 4.58228 4.60036 4.70329 4.73696 4.75756 4.88781 5.00448 5.03451 5.10576 5.12766 5.14457 5.18866 5.31787 5.33558 5.42487 5.61897 5.67499 5.68007 5.92099 6.08271 6.18024 6.34791 6.43875 6.67209 6.71215 6.90289 6.91248 7.00137 8.30227 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.026096 B = 0.002259 C = 0.002233 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1072.690666 B =12391.293541 C =12537.742927 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.096 3.904 3 N -0.334 5.334 4 N -0.470 5.470 5 H 0.451 0.549 6 C 0.112 3.888 7 C -0.098 4.098 8 C -0.249 4.249 9 C 0.005 3.995 10 H 0.133 0.867 11 C -0.140 4.140 12 C 0.458 3.542 13 O -0.531 6.531 14 O -0.358 6.358 15 C 0.142 3.858 16 C -0.227 4.227 17 C -0.080 4.080 18 C -0.193 4.193 19 C 0.087 3.913 20 C -0.493 4.493 21 H 0.079 0.921 22 C 0.035 3.965 23 N -0.817 5.817 24 Si 0.984 3.016 25 H -0.263 1.263 26 H -0.267 1.267 27 H -0.258 1.258 28 C -0.245 4.245 29 C -0.065 4.065 30 H 0.092 0.908 31 H 0.067 0.933 32 H 0.069 0.931 33 H 0.089 0.911 34 H 0.100 0.900 35 H 0.099 0.901 36 H 0.068 0.932 37 H 0.058 0.942 38 H 0.089 0.911 39 H 0.069 0.931 40 H 0.065 0.935 41 H 0.106 0.894 42 H 0.104 0.896 43 H 0.290 0.710 44 H 0.102 0.898 45 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.388 12.992 -5.882 18.890 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.070 4.070 3 N -0.158 5.158 4 N -0.179 5.179 5 H 0.298 0.702 6 C -0.019 4.019 7 C -0.156 4.156 8 C -0.260 4.260 9 C -0.015 4.015 10 H 0.150 0.850 11 C -0.197 4.197 12 C 0.302 3.698 13 O -0.421 6.421 14 O -0.275 6.275 15 C 0.069 3.931 16 C -0.228 4.228 17 C -0.098 4.098 18 C -0.213 4.213 19 C 0.085 3.915 20 C -0.522 4.522 21 H 0.097 0.903 22 C -0.181 4.181 23 N -0.442 5.442 24 Si 0.804 3.196 25 H -0.187 1.187 26 H -0.192 1.192 27 H -0.181 1.181 28 C -0.264 4.264 29 C -0.084 4.084 30 H 0.111 0.889 31 H 0.085 0.915 32 H 0.088 0.912 33 H 0.108 0.892 34 H 0.119 0.881 35 H 0.117 0.883 36 H 0.087 0.913 37 H 0.077 0.923 38 H 0.108 0.892 39 H 0.087 0.913 40 H 0.084 0.916 41 H 0.124 0.876 42 H 0.122 0.878 43 H 0.101 0.899 44 H 0.120 0.880 45 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 12.217 14.512 -5.848 19.851 hybrid contribution -0.356 -1.021 0.393 1.150 sum 11.862 13.491 -5.456 18.774 Atomic orbital electron populations 1.20314 0.86833 1.03145 1.03259 1.22289 0.97356 0.90413 0.96902 1.77213 0.87715 1.22860 1.28008 1.46116 1.07045 1.05119 1.59622 0.70249 1.21361 0.97282 0.85284 0.97933 1.20717 0.91746 0.98412 1.04706 1.19227 0.92248 0.94195 1.20333 1.19233 0.98430 0.93520 0.90335 0.84980 1.21812 0.99825 1.02630 0.95468 1.24366 0.77684 0.79804 0.87966 1.90613 1.58211 1.45831 1.47448 1.86686 1.62124 1.33749 1.44927 1.21503 0.93271 0.93991 0.84334 1.18991 0.98058 0.94217 1.11528 1.20768 0.95738 0.95728 0.97574 1.21264 1.01007 0.92270 1.06737 1.18036 0.90500 0.93719 0.89289 1.19918 1.23300 0.97315 1.11676 0.90315 1.26802 0.96187 1.02019 0.93075 1.69875 1.29238 1.39711 1.05424 0.85178 0.78531 0.76913 0.78961 1.18726 1.19154 1.18132 1.21169 0.97664 0.96411 1.11174 1.20696 0.97829 0.92483 0.97355 0.88912 0.91461 0.91175 0.89214 0.88089 0.88276 0.91331 0.92340 0.89175 0.91302 0.91635 0.87596 0.87808 0.89896 0.87987 0.86500 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.88 8.57 71.24 0.61 -1.27 16 2 C 0.10 2.56 6.53 43.10 0.28 2.84 16 3 N -0.33 -8.84 12.70 -47.38 -0.60 -9.44 16 4 N -0.47 -8.86 7.36 -48.00 -0.35 -9.22 16 5 H 0.45 5.18 8.96 -213.34 -1.91 3.26 16 6 C 0.11 2.02 7.21 41.40 0.30 2.31 16 7 C -0.10 -0.89 10.06 71.23 0.72 -0.17 16 8 C -0.25 -5.79 4.36 -20.14 -0.09 -5.88 16 9 C 0.00 0.11 2.99 -12.29 -0.04 0.07 16 10 H 0.13 2.32 6.79 -2.38 -0.02 2.30 16 11 C -0.14 -2.82 8.99 71.98 0.65 -2.17 16 12 C 0.46 13.96 6.30 71.24 0.45 14.41 16 13 O -0.53 -18.66 13.62 21.97 0.30 -18.36 16 14 O -0.36 -12.40 10.11 -51.45 -0.52 -12.92 16 15 C 0.14 5.15 5.58 71.24 0.40 5.54 16 16 C -0.23 -9.70 5.54 -19.67 -0.11 -9.81 16 17 C -0.08 -3.68 9.67 22.22 0.21 -3.47 16 18 C -0.19 -10.09 8.70 22.73 0.20 -9.89 16 19 C 0.09 4.65 5.57 -21.29 -0.12 4.53 16 20 C -0.49 -26.12 9.05 23.46 0.21 -25.91 16 21 H 0.08 4.01 7.91 -2.91 -0.02 3.98 16 22 C 0.04 1.73 5.14 85.26 0.44 2.17 16 23 N -0.82 -41.85 10.95 21.83 0.24 -41.61 16 24 Si 0.98 37.19 29.60 68.60 2.03 39.22 16 25 H -0.26 -9.67 7.11 99.48 0.71 -8.96 16 26 H -0.27 -9.56 7.11 99.48 0.71 -8.86 16 27 H -0.26 -9.48 7.11 99.48 0.71 -8.77 16 28 C -0.24 -11.85 9.80 22.73 0.22 -11.63 16 29 C -0.07 -2.84 9.67 22.22 0.21 -2.62 16 30 H 0.09 1.84 7.92 -2.39 -0.02 1.82 16 31 H 0.07 1.84 5.30 -2.38 -0.01 1.82 16 32 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 33 H 0.09 0.78 8.14 -2.38 -0.02 0.76 16 34 H 0.10 0.73 7.14 -2.39 -0.02 0.72 16 35 H 0.10 0.41 8.14 -2.39 -0.02 0.39 16 36 H 0.07 1.50 8.11 -2.39 -0.02 1.48 16 37 H 0.06 1.22 6.15 -2.39 -0.01 1.20 16 38 H 0.09 1.41 8.14 -2.38 -0.02 1.39 16 39 H 0.07 2.37 8.07 -2.39 -0.02 2.35 16 40 H 0.07 2.31 8.07 -2.39 -0.02 2.29 16 41 H 0.11 4.40 8.06 -2.91 -0.02 4.38 16 42 H 0.10 5.64 6.16 -2.91 -0.02 5.63 16 43 H 0.29 13.36 8.30 -92.71 -0.77 12.59 16 44 H 0.10 4.63 8.06 -2.91 -0.02 4.61 16 45 H 0.12 4.33 8.06 -2.91 -0.02 4.30 16 Total: -1.00 -67.67 375.01 4.76 -62.91 By element: Atomic # 1 Polarization: 31.23 SS G_CDS: -0.89 Total: 30.35 kcal Atomic # 6 Polarization: -45.48 SS G_CDS: 4.55 Total: -40.93 kcal Atomic # 7 Polarization: -59.55 SS G_CDS: -0.72 Total: -60.27 kcal Atomic # 8 Polarization: -31.06 SS G_CDS: -0.22 Total: -31.28 kcal Atomic # 14 Polarization: 37.19 SS G_CDS: 2.03 Total: 39.22 kcal Total: -67.67 4.76 -62.91 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000786328187.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.191 kcal (2) G-P(sol) polarization free energy of solvation -67.667 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.476 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.755 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.912 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds