Wall clock time and date at job start Tue Mar 31 2020 15:59:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.26987 * 125.11861 * 2 1 4 4 N 1.39339 * 114.49086 * 180.02562 * 3 2 1 5 5 C 1.38957 * 125.65508 * 180.02562 * 4 3 2 6 6 C 1.39285 * 119.93101 * 0.02562 * 5 4 3 7 7 C 1.37090 * 120.07254 * 179.97438 * 6 5 4 8 8 C 1.39872 * 119.92781 * 0.02562 * 7 6 5 9 9 C 1.47383 * 120.07012 * 179.97438 * 8 7 6 10 10 O 1.21520 * 119.99795 * 0.02562 * 9 8 7 11 11 O 1.34759 * 119.99959 * 180.02562 * 9 8 7 12 12 C 1.45199 * 116.99802 * 174.72533 * 11 9 8 13 13 C 1.50705 * 112.90647 * 307.40738 * 12 11 9 14 14 H 1.08003 * 120.00094 * 133.70624 * 13 12 11 15 15 C 1.37875 * 119.99896 * 313.70449 * 13 12 11 16 16 N 1.31513 * 119.99860 * 173.41442 * 15 13 12 17 17 Si 1.86802 * 120.00132 * 353.40730 * 15 13 12 18 18 H 1.48502 * 109.46753 * 84.59017 * 17 15 13 19 19 H 1.48497 * 109.47162 * 204.58766 * 17 15 13 20 20 H 1.48493 * 109.47119 * 324.59533 * 17 15 13 21 21 C 1.53784 * 113.61489 * 176.15935 * 12 11 9 22 22 C 1.53782 * 87.17028 * 220.06069 * 21 12 11 23 23 C 1.53776 * 87.08691 * 25.38683 * 22 21 12 24 24 C 1.39869 * 119.86092 * 0.25288 * 8 7 6 25 25 C 1.37094 * 119.92705 * 359.46596 * 24 8 7 26 26 C 1.47238 * 108.69128 * 0.26496 * 4 3 2 27 27 C 1.51206 * 125.12282 * 180.02562 * 2 1 3 28 28 H 1.08998 * 109.47525 * 359.97438 * 1 2 3 29 29 H 1.09003 * 109.46889 * 119.97395 * 1 2 3 30 30 H 1.08999 * 109.47006 * 239.97440 * 1 2 3 31 31 H 1.08001 * 119.96328 * 359.97438 * 6 5 4 32 32 H 1.08002 * 120.03702 * 180.02562 * 7 6 5 33 33 H 0.96998 * 120.00206 * 180.02562 * 16 15 13 34 34 H 1.08995 * 113.61791 * 105.46752 * 21 12 11 35 35 H 1.09000 * 113.61253 * 334.64342 * 21 12 11 36 36 H 1.09004 * 113.61762 * 139.94110 * 22 21 12 37 37 H 1.09002 * 113.61445 * 270.75378 * 22 21 12 38 38 H 1.09002 * 113.61185 * 89.11079 * 23 22 21 39 39 H 1.08991 * 113.61758 * 219.93687 * 23 22 21 40 40 H 1.08000 * 120.03311 * 179.74285 * 24 8 7 41 41 H 1.08006 * 119.96357 * 180.29575 * 25 24 8 42 42 H 1.09000 * 110.66439 * 118.17961 * 26 4 3 43 43 H 1.08994 * 110.66327 * 241.29467 * 26 4 3 44 44 H 1.09003 * 110.55283 * 298.57504 * 27 2 1 45 45 H 1.09005 * 110.56048 * 61.41349 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2375 1.0387 0.0000 4 7 3.6070 0.7817 -0.0006 5 6 4.6113 1.7421 -0.0002 6 6 4.2794 3.0948 0.0014 7 6 5.2679 4.0447 0.0023 8 6 6.6110 3.6541 0.0011 9 6 7.6762 4.6727 0.0015 10 8 7.3880 5.8532 0.0034 11 8 8.9698 4.2948 -0.0002 12 6 9.9636 5.3467 -0.1186 13 6 9.7213 6.2525 -1.2984 14 1 9.7782 7.3242 -1.1772 15 6 9.4269 5.7131 -2.5326 16 7 9.0886 6.5001 -3.5305 17 14 9.5089 3.8643 -2.7876 18 1 8.2265 3.2486 -2.3614 19 1 9.7445 3.5728 -4.2244 20 1 10.6205 3.3020 -1.9795 21 6 11.4120 4.8399 -0.0184 22 6 11.7127 6.0948 0.8181 23 6 10.2223 6.1035 1.1970 24 6 6.9410 2.2949 -0.0064 25 6 5.9478 1.3499 -0.0014 26 6 3.8135 -0.6761 -0.0075 27 6 2.3769 -1.2367 -0.0006 28 1 -0.3634 1.0276 0.0005 29 1 -0.3633 -0.5134 -0.8902 30 1 -0.3633 -0.5142 0.8897 31 1 3.2422 3.3957 0.0019 32 1 5.0099 5.0934 0.0039 33 1 8.8811 6.1206 -4.3987 34 1 11.9340 4.8174 -0.9750 35 1 11.5112 3.9090 0.5400 36 1 12.3767 5.9082 1.6622 37 1 12.0180 6.9544 0.2215 38 1 9.9949 5.5181 2.0878 39 1 9.7842 7.1012 1.2228 40 1 7.9771 1.9903 -0.0115 41 1 6.2020 0.3002 -0.0024 42 1 4.3448 -0.9851 -0.9077 43 1 4.3520 -0.9925 0.8858 44 1 2.1978 -1.8310 0.8955 45 1 2.1977 -1.8304 -0.8970 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000788130076.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:59:54 Heat of formation + Delta-G solvation = 29.071216 kcal Electronic energy + Delta-G solvation = -27762.325608 eV Core-core repulsion = 23940.325937 eV Total energy + Delta-G solvation = -3821.999671 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.55987 -39.65031 -38.51063 -36.95281 -34.41688 -33.88228 -32.25580 -31.49268 -30.69185 -30.28076 -27.73140 -26.47297 -24.81324 -24.35362 -23.10385 -22.66678 -21.66524 -20.12001 -19.45822 -18.45449 -17.88782 -17.27627 -16.48036 -16.38360 -15.48161 -15.26062 -15.07917 -14.64138 -14.20378 -14.11271 -13.90635 -13.85022 -13.67010 -13.35982 -13.33622 -13.07826 -12.86536 -12.72579 -12.19412 -12.10642 -12.02998 -11.79019 -11.62357 -11.44772 -11.05066 -10.89459 -10.86375 -10.53844 -10.43970 -10.19684 -10.01049 -9.73174 -9.52666 -9.36997 -9.07597 -8.88458 -8.67729 -8.45528 -7.38912 -6.11353 -4.14105 1.06743 1.60719 1.97666 2.28262 3.30999 3.39363 3.45848 3.54401 3.84678 3.88265 4.01450 4.32041 4.37001 4.47122 4.54440 4.96662 5.00977 5.08185 5.11451 5.13878 5.15436 5.26132 5.34528 5.35806 5.50394 5.57111 5.58578 5.65445 5.69630 5.75943 5.91437 6.01717 6.21426 6.22653 6.38747 6.46035 6.49198 6.52280 6.75565 6.76761 6.81973 6.91102 7.01003 7.26179 7.32113 7.49914 7.72172 7.86311 8.46374 8.90526 9.05937 9.49494 10.99641 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.020748 B = 0.003047 C = 0.002995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1349.213003 B = 9185.726486 C = 9346.244115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.060 3.940 3 N -0.232 5.232 4 N -0.475 5.475 5 C 0.248 3.752 6 C -0.175 4.175 7 C -0.021 4.021 8 C -0.154 4.154 9 C 0.504 3.496 10 O -0.477 6.477 11 O -0.369 6.369 12 C 0.202 3.798 13 C -0.502 4.502 14 H 0.085 0.915 15 C 0.081 3.919 16 N -0.882 5.882 17 Si 0.876 3.124 18 H -0.270 1.270 19 H -0.302 1.302 20 H -0.255 1.255 21 C -0.127 4.127 22 C -0.127 4.127 23 C -0.150 4.150 24 C -0.024 4.024 25 C -0.197 4.197 26 C 0.080 3.920 27 C -0.132 4.132 28 H 0.079 0.921 29 H 0.082 0.918 30 H 0.081 0.919 31 H 0.135 0.865 32 H 0.140 0.860 33 H 0.265 0.735 34 H 0.071 0.929 35 H 0.065 0.935 36 H 0.056 0.944 37 H 0.084 0.916 38 H 0.065 0.935 39 H 0.068 0.932 40 H 0.137 0.863 41 H 0.125 0.875 42 H 0.081 0.919 43 H 0.081 0.919 44 H 0.098 0.902 45 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.920 -18.087 8.482 23.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.135 4.135 3 N -0.035 5.035 4 N -0.274 5.274 5 C 0.150 3.850 6 C -0.197 4.197 7 C -0.039 4.039 8 C -0.157 4.157 9 C 0.347 3.653 10 O -0.363 6.363 11 O -0.288 6.288 12 C 0.167 3.833 13 C -0.539 4.539 14 H 0.103 0.897 15 C -0.124 4.124 16 N -0.518 5.518 17 Si 0.705 3.295 18 H -0.196 1.196 19 H -0.230 1.230 20 H -0.179 1.179 21 C -0.165 4.165 22 C -0.164 4.164 23 C -0.188 4.188 24 C -0.043 4.043 25 C -0.219 4.219 26 C -0.044 4.044 27 C -0.172 4.172 28 H 0.098 0.902 29 H 0.100 0.900 30 H 0.100 0.900 31 H 0.152 0.848 32 H 0.158 0.842 33 H 0.075 0.925 34 H 0.090 0.910 35 H 0.083 0.917 36 H 0.075 0.925 37 H 0.102 0.898 38 H 0.083 0.917 39 H 0.087 0.913 40 H 0.155 0.845 41 H 0.143 0.857 42 H 0.099 0.901 43 H 0.099 0.901 44 H 0.116 0.884 45 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -12.902 -16.676 8.313 22.664 hybrid contribution 0.182 -1.824 -0.436 1.884 sum -12.720 -18.500 7.877 23.793 Atomic orbital electron populations 1.20284 0.85583 1.04235 1.03232 1.25053 0.97188 0.90694 1.00524 1.73798 0.90261 1.28096 1.11348 1.47994 0.99679 1.03581 1.76159 1.17447 0.85528 0.87524 0.94526 1.20468 1.00238 0.90097 1.08874 1.20982 0.90472 1.00327 0.92166 1.19467 0.92751 0.92929 1.10556 1.20454 0.82799 0.87633 0.74450 1.90799 1.83763 1.18578 1.43133 1.86376 1.15696 1.44202 1.82555 1.21768 0.82431 0.84289 0.94767 1.20731 1.48850 0.94072 0.90240 0.89675 1.24939 0.93315 0.98280 0.95820 1.69918 1.43964 1.35588 1.02341 0.86860 0.80425 0.86202 0.76056 1.19561 1.22971 1.17949 1.23336 0.96545 0.96643 0.99987 1.22481 0.95997 0.98992 0.98956 1.23437 0.96138 1.01307 0.97877 1.21073 0.99552 0.91456 0.92193 1.20344 0.89975 0.99924 1.11690 1.22698 0.97640 0.80948 1.03097 1.22289 0.92070 0.98131 1.04716 0.90239 0.89981 0.89996 0.84760 0.84200 0.92520 0.91026 0.91661 0.92535 0.89772 0.91687 0.91330 0.84469 0.85747 0.90100 0.90096 0.88409 0.88469 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.37 10.48 36.01 0.38 0.01 16 2 C 0.06 0.52 7.43 -79.08 -0.59 -0.07 16 3 N -0.23 -2.88 11.18 34.80 0.39 -2.50 16 4 N -0.48 -6.22 4.07 -57.48 -0.23 -6.46 16 5 C 0.25 3.80 6.71 -83.85 -0.56 3.24 16 6 C -0.18 -2.86 9.60 -39.61 -0.38 -3.24 16 7 C -0.02 -0.38 9.56 -39.39 -0.38 -0.76 16 8 C -0.15 -3.16 5.83 -104.95 -0.61 -3.77 16 9 C 0.50 12.26 6.29 34.45 0.22 12.47 16 10 O -0.48 -12.95 14.80 -19.28 -0.29 -13.24 16 11 O -0.37 -8.93 6.86 -40.65 -0.28 -9.21 16 12 C 0.20 4.96 0.27 -90.86 -0.02 4.93 16 13 C -0.50 -14.52 7.08 -34.44 -0.24 -14.76 16 14 H 0.09 2.69 8.06 -52.48 -0.42 2.27 16 15 C 0.08 2.41 5.30 -17.82 -0.09 2.32 16 16 N -0.88 -27.71 13.96 55.43 0.77 -26.93 16 17 Si 0.88 22.67 24.66 -169.99 -4.19 18.47 16 18 H -0.27 -6.87 6.65 56.52 0.38 -6.50 16 19 H -0.30 -7.83 7.11 56.52 0.40 -7.43 16 20 H -0.26 -6.18 6.00 56.52 0.34 -5.84 16 21 C -0.13 -2.71 6.21 -25.92 -0.16 -2.87 16 22 C -0.13 -2.44 7.81 -25.92 -0.20 -2.64 16 23 C -0.15 -3.23 7.21 -25.83 -0.19 -3.42 16 24 C -0.02 -0.42 9.35 -39.39 -0.37 -0.79 16 25 C -0.20 -2.94 9.45 -39.61 -0.37 -3.31 16 26 C 0.08 0.72 6.55 -3.00 -0.02 0.70 16 27 C -0.13 -0.85 6.97 -27.00 -0.19 -1.04 16 28 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16 30 H 0.08 0.26 8.14 -51.93 -0.42 -0.17 16 31 H 0.13 2.04 7.65 -52.49 -0.40 1.64 16 32 H 0.14 2.56 7.64 -52.49 -0.40 2.16 16 33 H 0.27 7.86 8.31 -40.82 -0.34 7.52 16 34 H 0.07 1.57 7.53 -51.93 -0.39 1.18 16 35 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 36 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 37 H 0.08 1.65 8.14 -51.93 -0.42 1.23 16 38 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 39 H 0.07 1.55 8.10 -51.93 -0.42 1.13 16 40 H 0.14 2.33 7.60 -52.49 -0.40 1.93 16 41 H 0.12 1.47 7.29 -52.48 -0.38 1.09 16 42 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 43 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 44 H 0.10 0.44 8.14 -51.93 -0.42 0.02 16 45 H 0.10 0.47 8.14 -51.93 -0.42 0.04 16 LS Contribution 369.12 15.07 5.56 5.56 Total: -1.00 -35.75 369.12 -8.75 -44.49 By element: Atomic # 1 Polarization: 9.48 SS G_CDS: -6.69 Total: 2.78 kcal Atomic # 6 Polarization: -9.20 SS G_CDS: -3.79 Total: -12.99 kcal Atomic # 7 Polarization: -36.81 SS G_CDS: 0.93 Total: -35.89 kcal Atomic # 8 Polarization: -21.88 SS G_CDS: -0.56 Total: -22.44 kcal Atomic # 14 Polarization: 22.67 SS G_CDS: -4.19 Total: 18.47 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -35.75 -8.75 -44.49 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000788130076.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.565 kcal (2) G-P(sol) polarization free energy of solvation -35.749 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.494 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.071 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds