Wall clock time and date at job start Tue Mar 31 2020 15:59:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.26987 * 125.11861 * 2 1 4 4 N 1.39339 * 114.49086 * 180.02562 * 3 2 1 5 5 C 1.38957 * 125.65508 * 180.02562 * 4 3 2 6 6 C 1.39285 * 119.93101 * 0.02562 * 5 4 3 7 7 C 1.37090 * 120.07254 * 179.97438 * 6 5 4 8 8 C 1.39872 * 119.92781 * 0.02562 * 7 6 5 9 9 C 1.47383 * 120.07012 * 179.97438 * 8 7 6 10 10 O 1.21520 * 119.99795 * 0.02562 * 9 8 7 11 11 O 1.34759 * 119.99959 * 180.02562 * 9 8 7 12 12 C 1.45199 * 116.99802 * 174.72533 * 11 9 8 13 13 C 1.50705 * 112.90647 * 307.40738 * 12 11 9 14 14 H 1.08003 * 120.00094 * 133.70624 * 13 12 11 15 15 C 1.37875 * 119.99896 * 313.70449 * 13 12 11 16 16 N 1.31513 * 119.99860 * 173.41442 * 15 13 12 17 17 Si 1.86802 * 120.00132 * 353.40730 * 15 13 12 18 18 H 1.48502 * 109.46753 * 84.59017 * 17 15 13 19 19 H 1.48497 * 109.47162 * 204.58766 * 17 15 13 20 20 H 1.48493 * 109.47119 * 324.59533 * 17 15 13 21 21 C 1.53784 * 113.61489 * 176.15935 * 12 11 9 22 22 C 1.53782 * 87.17028 * 220.06069 * 21 12 11 23 23 C 1.53776 * 87.08691 * 25.38683 * 22 21 12 24 24 C 1.39869 * 119.86092 * 0.25288 * 8 7 6 25 25 C 1.37094 * 119.92705 * 359.46596 * 24 8 7 26 26 C 1.47238 * 108.69128 * 0.26496 * 4 3 2 27 27 C 1.51206 * 125.12282 * 180.02562 * 2 1 3 28 28 H 1.08998 * 109.47525 * 359.97438 * 1 2 3 29 29 H 1.09003 * 109.46889 * 119.97395 * 1 2 3 30 30 H 1.08999 * 109.47006 * 239.97440 * 1 2 3 31 31 H 1.08001 * 119.96328 * 359.97438 * 6 5 4 32 32 H 1.08002 * 120.03702 * 180.02562 * 7 6 5 33 33 H 0.96998 * 120.00206 * 180.02562 * 16 15 13 34 34 H 1.08995 * 113.61791 * 105.46752 * 21 12 11 35 35 H 1.09000 * 113.61253 * 334.64342 * 21 12 11 36 36 H 1.09004 * 113.61762 * 139.94110 * 22 21 12 37 37 H 1.09002 * 113.61445 * 270.75378 * 22 21 12 38 38 H 1.09002 * 113.61185 * 89.11079 * 23 22 21 39 39 H 1.08991 * 113.61758 * 219.93687 * 23 22 21 40 40 H 1.08000 * 120.03311 * 179.74285 * 24 8 7 41 41 H 1.08006 * 119.96357 * 180.29575 * 25 24 8 42 42 H 1.09000 * 110.66439 * 118.17961 * 26 4 3 43 43 H 1.08994 * 110.66327 * 241.29467 * 26 4 3 44 44 H 1.09003 * 110.55283 * 298.57504 * 27 2 1 45 45 H 1.09005 * 110.56048 * 61.41349 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2375 1.0387 0.0000 4 7 3.6070 0.7817 -0.0006 5 6 4.6113 1.7421 -0.0002 6 6 4.2794 3.0948 0.0014 7 6 5.2679 4.0447 0.0023 8 6 6.6110 3.6541 0.0011 9 6 7.6762 4.6727 0.0015 10 8 7.3880 5.8532 0.0034 11 8 8.9698 4.2948 -0.0002 12 6 9.9636 5.3467 -0.1186 13 6 9.7213 6.2525 -1.2984 14 1 9.7782 7.3242 -1.1772 15 6 9.4269 5.7131 -2.5326 16 7 9.0886 6.5001 -3.5305 17 14 9.5089 3.8643 -2.7876 18 1 8.2265 3.2486 -2.3614 19 1 9.7445 3.5728 -4.2244 20 1 10.6205 3.3020 -1.9795 21 6 11.4120 4.8399 -0.0184 22 6 11.7127 6.0948 0.8181 23 6 10.2223 6.1035 1.1970 24 6 6.9410 2.2949 -0.0064 25 6 5.9478 1.3499 -0.0014 26 6 3.8135 -0.6761 -0.0075 27 6 2.3769 -1.2367 -0.0006 28 1 -0.3634 1.0276 0.0005 29 1 -0.3633 -0.5134 -0.8902 30 1 -0.3633 -0.5142 0.8897 31 1 3.2422 3.3957 0.0019 32 1 5.0099 5.0934 0.0039 33 1 8.8811 6.1206 -4.3987 34 1 11.9340 4.8174 -0.9750 35 1 11.5112 3.9090 0.5400 36 1 12.3767 5.9082 1.6622 37 1 12.0180 6.9544 0.2215 38 1 9.9949 5.5181 2.0878 39 1 9.7842 7.1012 1.2228 40 1 7.9771 1.9903 -0.0115 41 1 6.2020 0.3002 -0.0024 42 1 4.3448 -0.9851 -0.9077 43 1 4.3520 -0.9925 0.8858 44 1 2.1978 -1.8310 0.8955 45 1 2.1977 -1.8304 -0.8970 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000788130076.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:59:53 Heat of formation + Delta-G solvation = 6.914948 kcal Electronic energy + Delta-G solvation = -27763.286375 eV Core-core repulsion = 23940.325937 eV Total energy + Delta-G solvation = -3822.960438 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.62859 -41.20579 -39.85359 -38.66309 -36.28541 -34.86799 -34.50546 -32.48956 -31.70433 -31.17003 -28.87357 -28.31366 -26.54153 -25.64227 -24.47191 -23.96172 -22.89321 -21.56936 -20.43059 -20.29863 -19.23487 -18.82517 -18.04432 -17.41937 -17.14100 -17.09184 -16.22078 -16.03359 -15.87101 -15.57787 -15.19071 -15.03971 -14.89923 -14.57824 -14.45031 -14.25630 -14.10379 -13.55741 -13.47556 -13.38008 -13.29380 -12.93288 -12.87758 -12.82204 -12.74157 -12.44531 -12.31232 -12.16524 -12.04507 -11.88930 -11.66849 -11.28463 -11.18446 -11.12473 -10.65583 -10.56850 -10.54411 -10.17586 -8.44552 -8.39435 -6.45854 -0.24631 0.32932 1.17653 1.29610 1.35208 1.41598 1.43406 1.84333 2.14899 2.31293 2.84309 2.96514 3.16213 3.45460 3.65374 3.80760 3.85805 3.90103 3.93469 4.01755 4.04554 4.21121 4.24123 4.34230 4.43592 4.51158 4.51751 4.73634 4.78902 4.82180 4.84954 4.87635 4.88685 4.91345 4.99233 5.04278 5.11912 5.16810 5.26535 5.27573 5.37955 5.50581 5.52053 5.60012 5.66116 5.81563 6.21860 6.30838 6.56147 6.92803 7.12804 7.25654 8.75903 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.020748 B = 0.003047 C = 0.002995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1349.213003 B = 9185.726486 C = 9346.244115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.087 3.913 3 N -0.296 5.296 4 N -0.484 5.484 5 C 0.264 3.736 6 C -0.183 4.183 7 C -0.026 4.026 8 C -0.199 4.199 9 C 0.500 3.500 10 O -0.528 6.528 11 O -0.362 6.362 12 C 0.177 3.823 13 C -0.501 4.501 14 H 0.034 0.966 15 C 0.024 3.976 16 N -0.936 5.936 17 Si 0.930 3.070 18 H -0.265 1.265 19 H -0.303 1.303 20 H -0.222 1.222 21 C -0.119 4.119 22 C -0.110 4.110 23 C -0.149 4.149 24 C -0.020 4.020 25 C -0.190 4.190 26 C 0.066 3.934 27 C -0.129 4.129 28 H 0.068 0.932 29 H 0.106 0.894 30 H 0.108 0.892 31 H 0.139 0.861 32 H 0.124 0.876 33 H 0.265 0.735 34 H 0.063 0.937 35 H 0.099 0.901 36 H 0.103 0.897 37 H 0.069 0.931 38 H 0.089 0.911 39 H 0.041 0.959 40 H 0.146 0.854 41 H 0.163 0.837 42 H 0.089 0.911 43 H 0.095 0.905 44 H 0.126 0.874 45 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.718 -23.833 10.011 29.265 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.107 4.107 3 N -0.099 5.099 4 N -0.281 5.281 5 C 0.162 3.838 6 C -0.205 4.205 7 C -0.046 4.046 8 C -0.202 4.202 9 C 0.346 3.654 10 O -0.417 6.417 11 O -0.280 6.280 12 C 0.142 3.858 13 C -0.538 4.538 14 H 0.052 0.948 15 C -0.175 4.175 16 N -0.575 5.575 17 Si 0.755 3.245 18 H -0.190 1.190 19 H -0.231 1.231 20 H -0.144 1.144 21 C -0.156 4.156 22 C -0.147 4.147 23 C -0.186 4.186 24 C -0.039 4.039 25 C -0.212 4.212 26 C -0.056 4.056 27 C -0.168 4.168 28 H 0.087 0.913 29 H 0.124 0.876 30 H 0.126 0.874 31 H 0.157 0.843 32 H 0.142 0.858 33 H 0.074 0.926 34 H 0.081 0.919 35 H 0.118 0.882 36 H 0.122 0.878 37 H 0.088 0.912 38 H 0.108 0.892 39 H 0.059 0.941 40 H 0.164 0.836 41 H 0.181 0.819 42 H 0.107 0.893 43 H 0.113 0.887 44 H 0.144 0.856 45 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -13.720 -22.478 9.872 28.124 hybrid contribution 0.084 -0.154 -0.844 0.862 sum -13.636 -22.632 9.028 27.922 Atomic orbital electron populations 1.20524 0.83130 1.04388 1.05568 1.25937 0.98606 0.91006 0.95135 1.73928 0.90070 1.30149 1.15756 1.48206 0.99958 1.04676 1.75215 1.17579 0.86721 0.87637 0.91894 1.20457 0.99764 0.90713 1.09588 1.20900 0.90666 1.00187 0.92806 1.19318 0.91871 0.93376 1.15613 1.21226 0.83352 0.87997 0.72842 1.90769 1.84227 1.20793 1.45933 1.86361 1.15782 1.43399 1.82495 1.21919 0.84276 0.85185 0.94382 1.20830 1.48012 0.92633 0.92321 0.94791 1.25793 0.93042 1.03228 0.95441 1.70072 1.46594 1.37844 1.03024 0.85990 0.81700 0.80530 0.76268 1.19017 1.23099 1.14409 1.23330 0.92878 0.98880 1.00538 1.22423 0.94886 0.97598 0.99811 1.23442 0.97980 0.99819 0.97392 1.21189 1.00750 0.90409 0.91526 1.20593 0.88984 1.01151 1.10501 1.23082 0.99732 0.78590 1.04214 1.22450 0.89727 0.97370 1.07275 0.91309 0.87606 0.87378 0.84322 0.85839 0.92615 0.91861 0.88225 0.87837 0.91194 0.89249 0.94053 0.83596 0.81928 0.89264 0.88686 0.85597 0.85999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.46 10.48 71.24 0.75 0.29 16 2 C 0.09 1.16 7.43 46.84 0.35 1.51 16 3 N -0.30 -6.71 11.18 -41.37 -0.46 -7.17 16 4 N -0.48 -11.39 4.07 -335.76 -1.37 -12.76 16 5 C 0.26 7.66 6.71 38.52 0.26 7.92 16 6 C -0.18 -6.07 9.60 22.25 0.21 -5.86 16 7 C -0.03 -1.03 9.56 22.40 0.21 -0.82 16 8 C -0.20 -8.34 5.83 -20.08 -0.12 -8.46 16 9 C 0.50 25.25 6.29 70.23 0.44 25.69 16 10 O -0.53 -30.78 14.80 19.77 0.29 -30.49 16 11 O -0.36 -17.47 6.86 -56.70 -0.39 -17.86 16 12 C 0.18 8.77 0.27 -10.95 0.00 8.77 16 13 C -0.50 -30.54 7.08 25.60 0.18 -30.36 16 14 H 0.03 2.34 8.06 -2.91 -0.02 2.32 16 15 C 0.02 1.49 5.30 84.65 0.45 1.94 16 16 N -0.94 -62.37 13.96 21.45 0.30 -62.07 16 17 Si 0.93 47.27 24.66 68.60 1.69 48.96 16 18 H -0.26 -13.18 6.65 99.48 0.66 -12.52 16 19 H -0.30 -15.30 7.11 99.48 0.71 -14.59 16 20 H -0.22 -9.95 6.00 99.48 0.60 -9.36 16 21 C -0.12 -4.77 6.21 31.12 0.19 -4.58 16 22 C -0.11 -4.03 7.81 31.12 0.24 -3.79 16 23 C -0.15 -6.42 7.21 31.18 0.22 -6.20 16 24 C -0.02 -0.67 9.35 22.40 0.21 -0.46 16 25 C -0.19 -5.16 9.45 22.25 0.21 -4.95 16 26 C 0.07 0.91 6.55 86.65 0.57 1.47 16 27 C -0.13 -0.99 6.97 30.42 0.21 -0.78 16 28 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 29 H 0.11 0.21 8.14 -2.39 -0.02 0.19 16 30 H 0.11 0.16 8.14 -2.39 -0.02 0.14 16 31 H 0.14 4.34 7.65 -2.91 -0.02 4.32 16 32 H 0.12 5.02 7.64 -2.91 -0.02 5.00 16 33 H 0.27 16.60 8.31 -92.71 -0.77 15.83 16 34 H 0.06 2.65 7.53 -2.39 -0.02 2.63 16 35 H 0.10 3.37 8.14 -2.39 -0.02 3.35 16 36 H 0.10 2.87 8.14 -2.38 -0.02 2.85 16 37 H 0.07 2.75 8.14 -2.39 -0.02 2.73 16 38 H 0.09 3.40 8.14 -2.39 -0.02 3.38 16 39 H 0.04 1.97 8.10 -2.39 -0.02 1.95 16 40 H 0.15 4.60 7.60 -2.91 -0.02 4.58 16 41 H 0.16 3.10 7.29 -2.91 -0.02 3.08 16 42 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 43 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 44 H 0.13 0.37 8.14 -2.39 -0.02 0.36 16 45 H 0.12 0.45 8.14 -2.38 -0.02 0.43 16 Total: -1.00 -86.22 369.12 5.49 -80.72 By element: Atomic # 1 Polarization: 18.49 SS G_CDS: 0.83 Total: 19.32 kcal Atomic # 6 Polarization: -23.25 SS G_CDS: 4.59 Total: -18.65 kcal Atomic # 7 Polarization: -80.47 SS G_CDS: -1.53 Total: -82.00 kcal Atomic # 8 Polarization: -48.26 SS G_CDS: -0.10 Total: -48.35 kcal Atomic # 14 Polarization: 47.27 SS G_CDS: 1.69 Total: 48.96 kcal Total: -86.22 5.49 -80.72 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000788130076.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.640 kcal (2) G-P(sol) polarization free energy of solvation -86.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.725 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds