Wall clock time and date at job start Tue Mar 31 2020 15:59:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30501 * 125.65139 * 2 1 4 4 C 1.34128 * 109.25499 * 180.28578 * 3 2 1 5 5 C 1.34669 * 108.02365 * 359.72809 * 4 3 2 6 6 N 1.35041 * 125.64920 * 179.81293 * 2 1 3 7 7 C 1.46500 * 126.39951 * 359.97438 * 6 2 1 8 8 C 1.52999 * 109.47509 * 84.70498 * 7 6 2 9 9 O 1.45196 * 109.47239 * 180.02562 * 8 7 6 10 10 C 1.34224 * 117.00191 * 180.02562 * 9 8 7 11 11 O 1.20824 * 119.99916 * 359.97438 * 10 9 8 12 12 C 1.50701 * 120.00125 * 180.02562 * 10 9 8 13 13 C 1.52999 * 109.47320 * 179.97438 * 12 10 9 14 14 H 1.09002 * 109.47164 * 54.99289 * 13 12 10 15 15 C 1.50704 * 109.47033 * 294.99854 * 13 12 10 16 16 H 1.07998 * 120.00592 * 121.36458 * 15 13 12 17 17 C 1.37882 * 119.99753 * 301.36718 * 15 13 12 18 18 N 1.31514 * 120.00076 * 6.16927 * 17 15 13 19 19 Si 1.86794 * 119.99958 * 186.17561 * 17 15 13 20 20 H 1.48501 * 109.47462 * 89.99569 * 19 17 15 21 21 H 1.48503 * 109.47371 * 209.99716 * 19 17 15 22 22 H 1.48499 * 109.47126 * 329.99584 * 19 17 15 23 23 C 1.50703 * 109.47354 * 174.99748 * 13 12 10 24 24 C 1.38233 * 119.99531 * 211.36715 * 23 13 12 25 25 C 1.38235 * 119.99584 * 179.78726 * 24 23 13 26 26 C 1.38237 * 120.00004 * 0.44499 * 25 24 23 27 27 C 1.38235 * 120.00047 * 359.80790 * 26 25 24 28 28 C 1.38232 * 119.99889 * 31.64437 * 23 13 12 29 29 H 1.08998 * 109.47628 * 270.18021 * 1 2 3 30 30 H 1.09001 * 109.47028 * 30.18370 * 1 2 3 31 31 H 1.08997 * 109.47305 * 150.17807 * 1 2 3 32 32 H 1.08002 * 125.99010 * 179.72245 * 4 3 2 33 33 H 1.07996 * 126.59477 * 179.97438 * 5 4 3 34 34 H 1.09001 * 109.47292 * 204.71202 * 7 6 2 35 35 H 1.09008 * 109.46750 * 324.70426 * 7 6 2 36 36 H 1.09002 * 109.46743 * 300.00298 * 8 7 6 37 37 H 1.08999 * 109.47173 * 60.00376 * 8 7 6 38 38 H 1.09000 * 109.46912 * 299.99631 * 12 10 9 39 39 H 1.09002 * 109.47351 * 59.99598 * 12 10 9 40 40 H 0.97001 * 120.00285 * 179.97438 * 18 17 15 41 41 H 1.08002 * 120.00800 * 359.97438 * 24 23 13 42 42 H 1.08004 * 120.00534 * 180.27617 * 25 24 23 43 43 H 1.08003 * 120.00400 * 179.83904 * 26 25 24 44 44 H 1.07998 * 120.00227 * 180.02562 * 27 26 25 45 45 H 1.07995 * 120.00039 * 359.97438 * 28 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2676 1.0604 0.0000 4 6 3.5543 0.6818 -0.0063 5 6 3.5926 -0.6643 -0.0043 6 7 2.2940 -1.0973 0.0036 7 6 1.8425 -2.4910 0.0087 8 6 1.5581 -2.9403 -1.4260 9 8 1.1101 -4.3214 -1.4208 10 6 0.8172 -4.8715 -2.6096 11 8 0.9311 -4.2204 -3.6210 12 6 0.3453 -6.3009 -2.6827 13 6 0.0824 -6.6771 -4.1422 14 1 0.9771 -6.4839 -4.7341 15 6 -1.0605 -5.8522 -4.6756 16 1 -0.9123 -5.2165 -5.5360 17 6 -2.2954 -5.9091 -4.0650 18 7 -2.4461 -6.5865 -2.9479 19 14 -3.7545 -5.0240 -4.8247 20 1 -4.4532 -5.9373 -5.7642 21 1 -4.6923 -4.6048 -3.7523 22 1 -3.2779 -3.8260 -5.5614 23 6 -0.2707 -8.1397 -4.2282 24 6 0.0684 -8.8675 -5.3535 25 6 -0.2516 -10.2101 -5.4305 26 6 -0.9188 -10.8226 -4.3862 27 6 -1.2625 -10.0935 -3.2632 28 6 -0.9387 -8.7519 -3.1843 29 1 -0.3634 0.0032 1.0276 30 1 -0.3633 0.8883 -0.5167 31 1 -0.3634 -0.8915 -0.5110 32 1 4.4099 1.3410 -0.0121 33 1 4.4776 -1.2833 -0.0084 34 1 2.6188 -3.1229 0.4402 35 1 0.9328 -2.5760 0.6031 36 1 0.7818 -2.3084 -1.8574 37 1 2.4678 -2.8554 -2.0204 38 1 1.1110 -6.9578 -2.2701 39 1 -0.5747 -6.4096 -2.1084 40 1 -3.3149 -6.6262 -2.5182 41 1 0.5860 -8.3880 -6.1712 42 1 0.0173 -10.7799 -6.3077 43 1 -1.1711 -11.8710 -4.4474 44 1 -1.7834 -10.5722 -2.4471 45 1 -1.2071 -8.1823 -2.3070 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000795982022.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:59:13 Heat of formation + Delta-G solvation = 0.655442 kcal Electronic energy + Delta-G solvation = -27321.915382 eV Core-core repulsion = 23498.683511 eV Total energy + Delta-G solvation = -3823.231871 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.22536 -39.80941 -38.34306 -36.31370 -34.52221 -34.30092 -31.85269 -31.25246 -29.96824 -29.67489 -28.53587 -26.96685 -26.16313 -23.82587 -22.69217 -21.57993 -21.49557 -20.62251 -19.85580 -19.32932 -17.39279 -16.68483 -16.61352 -16.32568 -15.91858 -15.64088 -15.13737 -14.79460 -14.64191 -14.01318 -13.93496 -13.85147 -13.53826 -13.18095 -13.13836 -12.95888 -12.66185 -12.45348 -12.33864 -12.03824 -11.98019 -11.73338 -11.59117 -11.44066 -11.01444 -10.89299 -10.57285 -10.34817 -10.25242 -10.10491 -10.06955 -9.83149 -9.59987 -9.43686 -9.20184 -8.60023 -8.46635 -7.89583 -7.55571 -6.14263 -4.24090 1.85410 2.37170 2.41414 2.47843 3.03919 3.13855 3.22600 3.29627 3.34790 3.43861 4.31701 4.38072 4.41602 4.64138 4.69660 4.86500 5.02885 5.09943 5.15358 5.23084 5.39096 5.43197 5.46774 5.65119 5.73286 5.75313 5.80627 5.88131 5.93026 6.17242 6.21904 6.33826 6.41247 6.60451 6.63920 6.67001 6.83018 7.01931 7.03223 7.10475 7.17647 7.34129 7.43300 7.59978 7.82784 7.97112 7.98784 8.06739 8.18255 8.61157 8.77413 9.41202 10.80481 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.016163 B = 0.002919 C = 0.002650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1731.952659 B = 9591.017998 C =10564.826724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.210 3.790 3 N -0.494 5.494 4 C -0.029 4.029 5 C -0.058 4.058 6 N -0.452 5.452 7 C 0.106 3.894 8 C 0.053 3.947 9 O -0.368 6.368 10 C 0.472 3.528 11 O -0.494 6.494 12 C -0.112 4.112 13 C 0.085 3.915 14 H 0.039 0.961 15 C -0.482 4.482 16 H 0.063 0.937 17 C 0.062 3.938 18 N -0.888 5.888 19 Si 0.893 3.107 20 H -0.280 1.280 21 H -0.286 1.286 22 H -0.274 1.274 23 C -0.033 4.033 24 C -0.129 4.129 25 C -0.142 4.142 26 C -0.151 4.151 27 C -0.143 4.143 28 C -0.077 4.077 29 H 0.081 0.919 30 H 0.091 0.909 31 H 0.077 0.923 32 H 0.170 0.830 33 H 0.175 0.825 34 H 0.104 0.896 35 H 0.105 0.895 36 H 0.072 0.928 37 H 0.070 0.930 38 H 0.066 0.934 39 H 0.148 0.852 40 H 0.265 0.735 41 H 0.106 0.894 42 H 0.102 0.898 43 H 0.100 0.900 44 H 0.103 0.897 45 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.289 2.632 7.959 11.109 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.052 4.052 3 N -0.213 5.213 4 C -0.177 4.177 5 C -0.190 4.190 6 N -0.137 5.137 7 C -0.017 4.017 8 C -0.023 4.023 9 O -0.286 6.286 10 C 0.315 3.685 11 O -0.379 6.379 12 C -0.150 4.150 13 C 0.066 3.934 14 H 0.057 0.943 15 C -0.519 4.519 16 H 0.081 0.919 17 C -0.138 4.138 18 N -0.528 5.528 19 Si 0.721 3.279 20 H -0.206 1.206 21 H -0.212 1.212 22 H -0.199 1.199 23 C -0.034 4.034 24 C -0.148 4.148 25 C -0.160 4.160 26 C -0.169 4.169 27 C -0.161 4.161 28 C -0.095 4.095 29 H 0.100 0.900 30 H 0.110 0.890 31 H 0.095 0.905 32 H 0.187 0.813 33 H 0.192 0.808 34 H 0.123 0.877 35 H 0.123 0.877 36 H 0.091 0.909 37 H 0.088 0.912 38 H 0.084 0.916 39 H 0.165 0.835 40 H 0.075 0.925 41 H 0.125 0.875 42 H 0.121 0.879 43 H 0.118 0.882 44 H 0.121 0.879 45 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 6.851 3.493 7.766 10.929 hybrid contribution -0.570 -0.370 -0.651 0.941 sum 6.282 3.123 7.115 9.991 Atomic orbital electron populations 1.20264 0.84845 1.04493 1.03645 1.23393 0.95835 0.81250 1.04720 1.70262 1.02305 1.28231 1.20526 1.22282 0.94807 0.92752 1.07849 1.22747 0.86991 0.96954 1.12286 1.45298 1.06707 1.06962 1.54731 1.21640 1.03312 0.79218 0.97501 1.22977 1.00892 0.82647 0.95801 1.86495 1.78460 1.26574 1.37096 1.24412 0.72942 0.91336 0.79824 1.90602 1.47990 1.63390 1.35918 1.21920 1.03488 0.85218 1.04327 1.17704 0.96578 0.88586 0.90494 0.94253 1.21048 0.93907 1.22838 1.14114 0.91924 1.24902 0.98789 0.95252 0.94892 1.69502 1.24109 1.41913 1.17236 0.86544 0.82214 0.80007 0.79137 1.20555 1.21176 1.19901 1.20234 0.95037 0.95449 0.92666 1.20905 1.02020 0.93726 0.98112 1.20813 1.01605 0.95251 0.98320 1.20814 1.02136 0.98736 0.95262 1.21094 1.01865 0.95420 0.97708 1.21631 0.94505 0.92519 1.00859 0.90018 0.89023 0.90463 0.81317 0.80791 0.87718 0.87692 0.90941 0.91192 0.91620 0.83470 0.92495 0.87549 0.87948 0.88160 0.87899 0.83330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.75 10.04 36.01 0.36 -0.39 16 2 C 0.21 2.71 7.90 -155.42 -1.23 1.48 16 3 N -0.49 -7.10 11.25 -10.82 -0.12 -7.22 16 4 C -0.03 -0.35 11.87 -17.81 -0.21 -0.56 16 5 C -0.06 -0.63 11.58 -16.56 -0.19 -0.82 16 6 N -0.45 -5.28 2.75 -113.90 -0.31 -5.59 16 7 C 0.11 1.11 6.06 -4.04 -0.02 1.09 16 8 C 0.05 0.74 5.79 37.16 0.22 0.95 16 9 O -0.37 -6.23 10.22 -39.24 -0.40 -6.63 16 10 C 0.47 9.67 7.71 36.01 0.28 9.94 16 11 O -0.49 -11.50 14.73 -18.75 -0.28 -11.78 16 12 C -0.11 -2.31 4.33 -27.88 -0.12 -2.43 16 13 C 0.09 1.95 1.98 -92.92 -0.18 1.76 16 14 H 0.04 0.91 7.89 -51.93 -0.41 0.50 16 15 C -0.48 -12.34 7.27 -34.44 -0.25 -12.59 16 16 H 0.06 1.70 7.82 -52.49 -0.41 1.29 16 17 C 0.06 1.55 5.14 -17.82 -0.09 1.46 16 18 N -0.89 -21.55 7.74 55.43 0.43 -21.12 16 19 Si 0.89 20.59 29.54 -169.99 -5.02 15.56 16 20 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 21 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 22 H -0.27 -6.46 7.11 56.52 0.40 -6.05 16 23 C -0.03 -0.73 4.68 -104.62 -0.49 -1.22 16 24 C -0.13 -2.63 9.70 -39.58 -0.38 -3.02 16 25 C -0.14 -2.60 10.05 -39.58 -0.40 -3.00 16 26 C -0.15 -2.72 10.05 -39.58 -0.40 -3.12 16 27 C -0.14 -2.71 10.05 -39.58 -0.40 -3.11 16 28 C -0.08 -1.61 7.56 -39.58 -0.30 -1.91 16 29 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.09 0.90 8.14 -51.93 -0.42 0.47 16 31 H 0.08 0.77 7.33 -51.93 -0.38 0.39 16 32 H 0.17 1.57 8.06 -52.49 -0.42 1.15 16 33 H 0.17 1.34 8.06 -52.49 -0.42 0.92 16 34 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 35 H 0.10 0.98 7.94 -51.92 -0.41 0.57 16 36 H 0.07 1.11 7.63 -51.93 -0.40 0.71 16 37 H 0.07 1.01 8.13 -51.93 -0.42 0.59 16 38 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 39 H 0.15 3.24 4.65 -51.93 -0.24 3.00 16 40 H 0.26 6.27 8.31 -40.82 -0.34 5.93 16 41 H 0.11 2.03 8.06 -52.49 -0.42 1.61 16 42 H 0.10 1.60 8.06 -52.48 -0.42 1.17 16 43 H 0.10 1.52 8.06 -52.48 -0.42 1.10 16 44 H 0.10 1.72 8.06 -52.49 -0.42 1.30 16 45 H 0.15 3.21 4.97 -52.49 -0.26 2.95 16 LS Contribution 374.88 15.07 5.65 5.65 Total: -1.00 -29.55 374.88 -10.17 -39.72 By element: Atomic # 1 Polarization: 13.17 SS G_CDS: -6.30 Total: 6.87 kcal Atomic # 6 Polarization: -11.65 SS G_CDS: -3.81 Total: -15.46 kcal Atomic # 7 Polarization: -33.92 SS G_CDS: -0.01 Total: -33.93 kcal Atomic # 8 Polarization: -17.74 SS G_CDS: -0.68 Total: -18.41 kcal Atomic # 14 Polarization: 20.59 SS G_CDS: -5.02 Total: 15.56 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -29.55 -10.17 -39.72 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000795982022.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.372 kcal (2) G-P(sol) polarization free energy of solvation -29.550 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.822 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.167 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.717 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.655 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds