Wall clock time and date at job start Tue Mar 31 2020 15:59:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30501 * 125.65139 * 2 1 4 4 C 1.34128 * 109.25499 * 180.28578 * 3 2 1 5 5 C 1.34669 * 108.02365 * 359.72809 * 4 3 2 6 6 N 1.35041 * 125.64920 * 179.81293 * 2 1 3 7 7 C 1.46500 * 126.39951 * 359.97438 * 6 2 1 8 8 C 1.52999 * 109.47509 * 84.70498 * 7 6 2 9 9 O 1.45196 * 109.47239 * 180.02562 * 8 7 6 10 10 C 1.34224 * 117.00191 * 180.02562 * 9 8 7 11 11 O 1.20824 * 119.99916 * 359.97438 * 10 9 8 12 12 C 1.50701 * 120.00125 * 180.02562 * 10 9 8 13 13 C 1.52999 * 109.47320 * 179.97438 * 12 10 9 14 14 H 1.09002 * 109.47164 * 54.99289 * 13 12 10 15 15 C 1.50704 * 109.47033 * 294.99854 * 13 12 10 16 16 H 1.07998 * 120.00592 * 121.36458 * 15 13 12 17 17 C 1.37882 * 119.99753 * 301.36718 * 15 13 12 18 18 N 1.31514 * 120.00076 * 6.16927 * 17 15 13 19 19 Si 1.86794 * 119.99958 * 186.17561 * 17 15 13 20 20 H 1.48501 * 109.47462 * 89.99569 * 19 17 15 21 21 H 1.48503 * 109.47371 * 209.99716 * 19 17 15 22 22 H 1.48499 * 109.47126 * 329.99584 * 19 17 15 23 23 C 1.50703 * 109.47354 * 174.99748 * 13 12 10 24 24 C 1.38233 * 119.99531 * 211.36715 * 23 13 12 25 25 C 1.38235 * 119.99584 * 179.78726 * 24 23 13 26 26 C 1.38237 * 120.00004 * 0.44499 * 25 24 23 27 27 C 1.38235 * 120.00047 * 359.80790 * 26 25 24 28 28 C 1.38232 * 119.99889 * 31.64437 * 23 13 12 29 29 H 1.08998 * 109.47628 * 270.18021 * 1 2 3 30 30 H 1.09001 * 109.47028 * 30.18370 * 1 2 3 31 31 H 1.08997 * 109.47305 * 150.17807 * 1 2 3 32 32 H 1.08002 * 125.99010 * 179.72245 * 4 3 2 33 33 H 1.07996 * 126.59477 * 179.97438 * 5 4 3 34 34 H 1.09001 * 109.47292 * 204.71202 * 7 6 2 35 35 H 1.09008 * 109.46750 * 324.70426 * 7 6 2 36 36 H 1.09002 * 109.46743 * 300.00298 * 8 7 6 37 37 H 1.08999 * 109.47173 * 60.00376 * 8 7 6 38 38 H 1.09000 * 109.46912 * 299.99631 * 12 10 9 39 39 H 1.09002 * 109.47351 * 59.99598 * 12 10 9 40 40 H 0.97001 * 120.00285 * 179.97438 * 18 17 15 41 41 H 1.08002 * 120.00800 * 359.97438 * 24 23 13 42 42 H 1.08004 * 120.00534 * 180.27617 * 25 24 23 43 43 H 1.08003 * 120.00400 * 179.83904 * 26 25 24 44 44 H 1.07998 * 120.00227 * 180.02562 * 27 26 25 45 45 H 1.07995 * 120.00039 * 359.97438 * 28 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2676 1.0604 0.0000 4 6 3.5543 0.6818 -0.0063 5 6 3.5926 -0.6643 -0.0043 6 7 2.2940 -1.0973 0.0036 7 6 1.8425 -2.4910 0.0087 8 6 1.5581 -2.9403 -1.4260 9 8 1.1101 -4.3214 -1.4208 10 6 0.8172 -4.8715 -2.6096 11 8 0.9311 -4.2204 -3.6210 12 6 0.3453 -6.3009 -2.6827 13 6 0.0824 -6.6771 -4.1422 14 1 0.9771 -6.4839 -4.7341 15 6 -1.0605 -5.8522 -4.6756 16 1 -0.9123 -5.2165 -5.5360 17 6 -2.2954 -5.9091 -4.0650 18 7 -2.4461 -6.5865 -2.9479 19 14 -3.7545 -5.0240 -4.8247 20 1 -4.4532 -5.9373 -5.7642 21 1 -4.6923 -4.6048 -3.7523 22 1 -3.2779 -3.8260 -5.5614 23 6 -0.2707 -8.1397 -4.2282 24 6 0.0684 -8.8675 -5.3535 25 6 -0.2516 -10.2101 -5.4305 26 6 -0.9188 -10.8226 -4.3862 27 6 -1.2625 -10.0935 -3.2632 28 6 -0.9387 -8.7519 -3.1843 29 1 -0.3634 0.0032 1.0276 30 1 -0.3633 0.8883 -0.5167 31 1 -0.3634 -0.8915 -0.5110 32 1 4.4099 1.3410 -0.0121 33 1 4.4776 -1.2833 -0.0084 34 1 2.6188 -3.1229 0.4402 35 1 0.9328 -2.5760 0.6031 36 1 0.7818 -2.3084 -1.8574 37 1 2.4678 -2.8554 -2.0204 38 1 1.1110 -6.9578 -2.2701 39 1 -0.5747 -6.4096 -2.1084 40 1 -3.3149 -6.6262 -2.5182 41 1 0.5860 -8.3880 -6.1712 42 1 0.0173 -10.7799 -6.3077 43 1 -1.1711 -11.8710 -4.4474 44 1 -1.7834 -10.5722 -2.4471 45 1 -1.2071 -8.1823 -2.3070 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000795982022.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:59:12 Heat of formation + Delta-G solvation = -11.637994 kcal Electronic energy + Delta-G solvation = -27322.448466 eV Core-core repulsion = 23498.683511 eV Total energy + Delta-G solvation = -3823.764954 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -43.12521 -41.37121 -39.87089 -37.78149 -36.10059 -35.49097 -33.05345 -32.69528 -31.45164 -30.90573 -29.95895 -28.01068 -27.73626 -25.12538 -24.17405 -23.08174 -22.38214 -22.12100 -21.08657 -20.65826 -18.75662 -18.33095 -17.82948 -17.67713 -17.33858 -16.99167 -16.80694 -16.12862 -15.74760 -15.46957 -15.36672 -15.05789 -14.72788 -14.53639 -14.37159 -13.96917 -13.83195 -13.70631 -13.46809 -13.38742 -13.26470 -13.17649 -13.06543 -12.91127 -12.82735 -12.69139 -12.28048 -11.95195 -11.78487 -11.64782 -11.33382 -11.12100 -11.03548 -10.97020 -10.73524 -10.47819 -9.41134 -9.34340 -9.14081 -8.01946 -6.17579 0.86076 0.92707 0.97637 1.36074 1.39441 1.40364 1.47559 1.51342 2.11607 2.21449 2.42312 3.14518 3.34641 3.52924 3.54910 3.59962 3.84071 4.05595 4.17792 4.21700 4.30764 4.40790 4.42314 4.48348 4.55951 4.58652 4.63536 4.63938 4.77625 4.81034 4.83381 4.99070 5.04240 5.12297 5.21982 5.29215 5.45779 5.51845 5.60809 5.67446 5.79471 5.87980 5.93119 6.09089 6.14507 6.29824 6.38045 6.55928 6.78813 7.04588 7.07860 7.47101 8.88302 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.016163 B = 0.002919 C = 0.002650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1731.952659 B = 9591.017998 C =10564.826724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.192 3.808 3 N -0.530 5.530 4 C -0.052 4.052 5 C -0.052 4.052 6 N -0.455 5.455 7 C 0.117 3.883 8 C 0.053 3.947 9 O -0.357 6.357 10 C 0.474 3.526 11 O -0.530 6.530 12 C -0.106 4.106 13 C 0.087 3.913 14 H 0.022 0.978 15 C -0.504 4.504 16 H 0.032 0.968 17 C 0.038 3.962 18 N -0.883 5.883 19 Si 0.929 3.071 20 H -0.281 1.281 21 H -0.275 1.275 22 H -0.288 1.288 23 C -0.056 4.056 24 C -0.148 4.148 25 C -0.140 4.140 26 C -0.147 4.147 27 C -0.147 4.147 28 C -0.090 4.090 29 H 0.099 0.901 30 H 0.090 0.910 31 H 0.076 0.924 32 H 0.188 0.812 33 H 0.207 0.793 34 H 0.132 0.868 35 H 0.119 0.881 36 H 0.056 0.944 37 H 0.066 0.934 38 H 0.090 0.910 39 H 0.139 0.861 40 H 0.266 0.734 41 H 0.106 0.894 42 H 0.133 0.867 43 H 0.136 0.864 44 H 0.127 0.873 45 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.400 0.745 9.213 11.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.070 4.070 3 N -0.250 5.250 4 C -0.199 4.199 5 C -0.184 4.184 6 N -0.140 5.140 7 C -0.006 4.006 8 C -0.023 4.023 9 O -0.274 6.274 10 C 0.319 3.681 11 O -0.417 6.417 12 C -0.143 4.143 13 C 0.068 3.932 14 H 0.040 0.960 15 C -0.541 4.541 16 H 0.051 0.949 17 C -0.162 4.162 18 N -0.521 5.521 19 Si 0.757 3.243 20 H -0.207 1.207 21 H -0.200 1.200 22 H -0.213 1.213 23 C -0.057 4.057 24 C -0.166 4.166 25 C -0.158 4.158 26 C -0.165 4.165 27 C -0.165 4.165 28 C -0.108 4.108 29 H 0.118 0.882 30 H 0.108 0.892 31 H 0.095 0.905 32 H 0.205 0.795 33 H 0.224 0.776 34 H 0.150 0.850 35 H 0.137 0.863 36 H 0.074 0.926 37 H 0.084 0.916 38 H 0.108 0.892 39 H 0.156 0.844 40 H 0.077 0.923 41 H 0.125 0.875 42 H 0.151 0.849 43 H 0.154 0.846 44 H 0.145 0.855 45 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 6.967 1.597 9.056 11.537 hybrid contribution -0.542 0.207 -1.053 1.202 sum 6.425 1.804 8.003 10.421 Atomic orbital electron populations 1.20328 0.83625 1.04369 1.04778 1.23819 0.96806 0.81493 1.04892 1.70229 1.03614 1.29452 1.21681 1.22752 0.94736 0.93954 1.08423 1.23303 0.87566 0.97020 1.10493 1.45405 1.06983 1.07035 1.54570 1.21659 1.05069 0.78945 0.94883 1.23163 0.99977 0.80628 0.98509 1.86444 1.77901 1.28130 1.34967 1.24385 0.72272 0.91316 0.80156 1.90591 1.49638 1.64198 1.37321 1.21758 1.03770 0.85986 1.02799 1.17595 0.94843 0.89403 0.91385 0.95957 1.21016 0.95541 1.23744 1.13817 0.94939 1.25230 0.99681 0.95884 0.95408 1.69584 1.24242 1.41474 1.16831 0.86000 0.80781 0.78791 0.78703 1.20727 1.20047 1.21332 1.20216 0.96579 0.94968 0.93912 1.21095 1.02694 0.94998 0.97838 1.21172 1.00628 0.94449 0.99556 1.21236 1.00608 1.00364 0.94261 1.21398 1.01493 0.94670 0.98942 1.21580 0.95224 0.93652 1.00381 0.88217 0.89155 0.90531 0.79455 0.77605 0.85019 0.86251 0.92590 0.91604 0.89177 0.84424 0.92343 0.87550 0.84935 0.84630 0.85539 0.84312 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.45 10.04 71.24 0.72 -0.73 16 2 C 0.19 4.84 7.90 138.13 1.09 5.93 16 3 N -0.53 -15.13 11.25 -188.13 -2.12 -17.24 16 4 C -0.05 -1.21 11.87 83.52 0.99 -0.22 16 5 C -0.05 -1.03 11.58 83.09 0.96 -0.07 16 6 N -0.46 -9.95 2.75 -514.27 -1.42 -11.36 16 7 C 0.12 2.20 6.06 86.38 0.52 2.73 16 8 C 0.05 1.45 5.79 71.98 0.42 1.87 16 9 O -0.36 -11.86 10.22 -51.35 -0.52 -12.39 16 10 C 0.47 19.68 7.71 71.24 0.55 20.23 16 11 O -0.53 -25.51 14.73 21.97 0.32 -25.18 16 12 C -0.11 -4.38 4.33 29.85 0.13 -4.26 16 13 C 0.09 4.06 1.98 -12.28 -0.02 4.04 16 14 H 0.02 1.07 7.89 -2.39 -0.02 1.05 16 15 C -0.50 -26.67 7.27 25.60 0.19 -26.49 16 16 H 0.03 1.86 7.82 -2.91 -0.02 1.83 16 17 C 0.04 1.94 5.14 84.66 0.44 2.38 16 18 N -0.88 -42.65 7.74 21.45 0.17 -42.48 16 19 Si 0.93 42.49 29.54 68.60 2.03 44.52 16 20 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 21 H -0.28 -12.03 7.11 99.48 0.71 -11.32 16 22 H -0.29 -13.68 7.11 99.48 0.71 -12.97 16 23 C -0.06 -2.46 4.68 -19.87 -0.09 -2.55 16 24 C -0.15 -5.94 9.70 22.27 0.22 -5.73 16 25 C -0.14 -4.78 10.05 22.27 0.22 -4.55 16 26 C -0.15 -4.76 10.05 22.27 0.22 -4.53 16 27 C -0.15 -5.20 10.05 22.27 0.22 -4.98 16 28 C -0.09 -3.70 7.56 22.27 0.17 -3.53 16 29 H 0.10 1.58 8.14 -2.39 -0.02 1.56 16 30 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 31 H 0.08 1.51 7.33 -2.39 -0.02 1.49 16 32 H 0.19 3.31 8.06 -2.91 -0.02 3.29 16 33 H 0.21 2.54 8.06 -2.91 -0.02 2.52 16 34 H 0.13 1.83 8.14 -2.39 -0.02 1.81 16 35 H 0.12 1.95 7.94 -2.38 -0.02 1.93 16 36 H 0.06 1.74 7.63 -2.39 -0.02 1.72 16 37 H 0.07 1.87 8.13 -2.39 -0.02 1.85 16 38 H 0.09 3.23 8.14 -2.39 -0.02 3.21 16 39 H 0.14 6.08 4.65 -2.39 -0.01 6.07 16 40 H 0.27 12.42 8.31 -92.71 -0.77 11.65 16 41 H 0.11 4.13 8.06 -2.91 -0.02 4.10 16 42 H 0.13 3.66 8.06 -2.91 -0.02 3.63 16 43 H 0.14 3.44 8.06 -2.91 -0.02 3.41 16 44 H 0.13 3.81 8.06 -2.91 -0.02 3.78 16 45 H 0.14 5.92 4.97 -2.91 -0.01 5.90 16 Total: -1.00 -64.87 374.88 6.39 -58.48 By element: Atomic # 1 Polarization: 25.14 SS G_CDS: 0.99 Total: 26.13 kcal Atomic # 6 Polarization: -27.41 SS G_CDS: 6.94 Total: -20.47 kcal Atomic # 7 Polarization: -67.72 SS G_CDS: -3.37 Total: -71.08 kcal Atomic # 8 Polarization: -37.37 SS G_CDS: -0.20 Total: -37.57 kcal Atomic # 14 Polarization: 42.49 SS G_CDS: 2.03 Total: 44.52 kcal Total: -64.87 6.39 -58.48 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000795982022.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.844 kcal (2) G-P(sol) polarization free energy of solvation -64.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.026 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.482 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.638 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds