Wall clock time and date at job start Tue Mar 31 2020 15:59:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.30499 * 125.65797 * 2 1 4 4 C 1.34122 * 109.26175 * 180.29219 * 3 2 1 5 5 C 1.34671 * 108.01912 * 359.73122 * 4 3 2 6 6 N 1.35046 * 125.64737 * 179.82789 * 2 1 3 7 7 C 1.46499 * 126.39623 * 359.97438 * 6 2 1 8 8 C 1.53006 * 109.47378 * 84.71496 * 7 6 2 9 9 O 1.45196 * 109.47252 * 179.97438 * 8 7 6 10 10 C 1.34229 * 117.00053 * 179.97438 * 9 8 7 11 11 O 1.20829 * 119.99662 * 0.02562 * 10 9 8 12 12 C 1.50698 * 120.00103 * 180.02562 * 10 9 8 13 13 C 1.52998 * 109.47161 * 180.02562 * 12 10 9 14 14 H 1.09002 * 109.47236 * 304.99792 * 13 12 10 15 15 C 1.50692 * 109.47246 * 64.99650 * 13 12 10 16 16 H 1.08001 * 119.99817 * 29.59717 * 15 13 12 17 17 C 1.37877 * 120.00267 * 209.58968 * 15 13 12 18 18 N 1.31515 * 119.99860 * 4.95886 * 17 15 13 19 19 Si 1.86799 * 120.00181 * 184.94966 * 17 15 13 20 20 H 1.48505 * 109.46936 * 90.00476 * 19 17 15 21 21 H 1.48494 * 109.47240 * 210.00405 * 19 17 15 22 22 H 1.48497 * 109.47245 * 330.00787 * 19 17 15 23 23 C 1.50704 * 109.47102 * 185.00217 * 13 12 10 24 24 C 1.38231 * 119.99571 * 296.77371 * 23 13 12 25 25 C 1.38241 * 119.99503 * 179.79075 * 24 23 13 26 26 C 1.38233 * 120.00035 * 0.43884 * 25 24 23 27 27 C 1.38226 * 120.00201 * 359.81239 * 26 25 24 28 28 C 1.38234 * 119.99923 * 117.04634 * 23 13 12 29 29 H 1.09003 * 109.47044 * 270.17770 * 1 2 3 30 30 H 1.09004 * 109.46793 * 30.17208 * 1 2 3 31 31 H 1.08993 * 109.47271 * 150.17183 * 1 2 3 32 32 H 1.07997 * 125.99326 * 179.72529 * 4 3 2 33 33 H 1.08004 * 126.59091 * 179.97438 * 5 4 3 34 34 H 1.09006 * 109.47091 * 204.71314 * 7 6 2 35 35 H 1.09003 * 109.47262 * 324.71160 * 7 6 2 36 36 H 1.09006 * 109.46861 * 299.99959 * 8 7 6 37 37 H 1.08994 * 109.47073 * 59.99828 * 8 7 6 38 38 H 1.09001 * 109.46843 * 300.00329 * 12 10 9 39 39 H 1.09003 * 109.46869 * 60.00288 * 12 10 9 40 40 H 0.96997 * 120.00149 * 179.97438 * 18 17 15 41 41 H 1.07992 * 120.00445 * 359.97438 * 24 23 13 42 42 H 1.08001 * 119.99937 * 180.27773 * 25 24 23 43 43 H 1.07998 * 119.99931 * 179.83669 * 26 25 24 44 44 H 1.07998 * 120.00288 * 179.97438 * 27 26 25 45 45 H 1.07995 * 120.00382 * 359.97438 * 28 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2677 1.0603 0.0000 4 6 3.5544 0.6817 -0.0065 5 6 3.5925 -0.6644 -0.0046 6 7 2.2940 -1.0974 0.0033 7 6 1.8424 -2.4910 0.0080 8 6 1.5582 -2.9400 -1.4268 9 8 1.1111 -4.3214 -1.4222 10 6 0.8176 -4.8709 -2.6111 11 8 0.9309 -4.2193 -3.6223 12 6 0.3467 -6.3006 -2.6848 13 6 0.0839 -6.6764 -4.1444 14 1 -0.6163 -5.9651 -4.5824 15 6 1.3799 -6.6434 -4.9128 16 1 2.3113 -6.8582 -4.4101 17 6 1.3765 -6.3390 -6.2575 18 7 0.2569 -5.9824 -6.8482 19 14 2.9622 -6.4328 -7.2404 20 1 3.1154 -7.7983 -7.8037 21 1 2.9183 -5.4431 -8.3466 22 1 4.1136 -6.1318 -6.3523 23 6 -0.5028 -8.0630 -4.2083 24 6 0.2354 -9.1467 -3.7707 25 6 -0.3045 -10.4181 -3.8253 26 6 -1.5791 -10.6069 -4.3259 27 6 -2.3153 -9.5238 -4.7683 28 6 -1.7771 -8.2518 -4.7098 29 1 -0.3633 0.0032 1.0277 30 1 -0.3633 0.8885 -0.5165 31 1 -0.3633 -0.8915 -0.5111 32 1 4.4099 1.3408 -0.0122 33 1 4.4776 -1.2834 -0.0089 34 1 2.6186 -3.1231 0.4395 35 1 0.9326 -2.5762 0.6023 36 1 0.7819 -2.3079 -1.8583 37 1 2.4679 -2.8549 -2.0210 38 1 1.1132 -6.9572 -2.2732 39 1 -0.5728 -6.4103 -2.1098 40 1 0.2545 -5.7679 -7.7942 41 1 1.2327 -8.9997 -3.3835 42 1 0.2705 -11.2643 -3.4792 43 1 -1.9999 -11.6005 -4.3710 44 1 -3.3110 -9.6713 -5.1598 45 1 -2.3523 -7.4057 -5.0553 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000795982026.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:59:15 Heat of formation + Delta-G solvation = -5.549015 kcal Electronic energy + Delta-G solvation = -26962.948119 eV Core-core repulsion = 23139.447203 eV Total energy + Delta-G solvation = -3823.500916 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.26022 -39.91611 -38.44292 -36.39840 -34.53291 -34.12374 -31.90484 -31.61854 -30.09246 -29.83954 -28.81918 -27.00711 -25.87862 -23.88134 -22.82014 -21.72393 -21.53034 -20.76241 -19.89537 -19.34440 -17.45921 -16.82362 -16.66809 -16.36642 -16.12745 -15.79464 -15.15590 -14.76187 -14.50871 -14.20953 -14.09585 -13.91301 -13.66998 -13.27471 -13.17359 -12.78252 -12.74048 -12.54437 -12.49758 -12.34306 -12.11432 -11.83129 -11.72276 -11.67778 -10.96272 -10.87214 -10.67841 -10.35456 -10.34947 -10.17021 -10.11472 -9.88775 -9.68039 -9.52618 -9.17245 -8.49784 -8.47315 -8.12064 -7.72955 -6.05445 -4.06868 1.81261 2.21102 2.23076 2.35927 2.98916 3.01203 3.29510 3.30494 3.36386 3.37688 4.32903 4.35118 4.41159 4.56228 4.64238 4.66694 4.95865 5.09401 5.19993 5.27976 5.31794 5.37487 5.40497 5.57825 5.60244 5.65086 5.67775 5.75947 5.76602 5.94935 6.00079 6.13109 6.18346 6.32641 6.40386 6.57768 6.61212 6.80532 6.87826 6.99036 6.99739 7.23862 7.32546 7.41719 7.74687 7.84261 7.93083 7.95506 8.22279 8.51161 8.92964 9.55885 11.04297 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.013742 B = 0.002848 C = 0.002551 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2037.032332 B = 9830.623500 C =10972.825026 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C 0.208 3.792 3 N -0.493 5.493 4 C -0.029 4.029 5 C -0.056 4.056 6 N -0.453 5.453 7 C 0.107 3.893 8 C 0.053 3.947 9 O -0.372 6.372 10 C 0.456 3.544 11 O -0.459 6.459 12 C -0.092 4.092 13 C 0.075 3.925 14 H 0.075 0.925 15 C -0.503 4.503 16 H 0.053 0.947 17 C 0.079 3.921 18 N -0.878 5.878 19 Si 0.887 3.113 20 H -0.280 1.280 21 H -0.286 1.286 22 H -0.275 1.275 23 C -0.025 4.025 24 C -0.113 4.113 25 C -0.132 4.132 26 C -0.152 4.152 27 C -0.128 4.128 28 C -0.117 4.117 29 H 0.081 0.919 30 H 0.091 0.909 31 H 0.075 0.925 32 H 0.170 0.830 33 H 0.175 0.825 34 H 0.105 0.895 35 H 0.104 0.896 36 H 0.072 0.928 37 H 0.073 0.927 38 H 0.090 0.910 39 H 0.080 0.920 40 H 0.261 0.739 41 H 0.115 0.885 42 H 0.107 0.893 43 H 0.105 0.895 44 H 0.107 0.893 45 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.215 2.603 14.419 14.654 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.054 4.054 3 N -0.212 5.212 4 C -0.176 4.176 5 C -0.188 4.188 6 N -0.138 5.138 7 C -0.016 4.016 8 C -0.023 4.023 9 O -0.291 6.291 10 C 0.297 3.703 11 O -0.340 6.340 12 C -0.130 4.130 13 C 0.056 3.944 14 H 0.093 0.907 15 C -0.540 4.540 16 H 0.071 0.929 17 C -0.125 4.125 18 N -0.514 5.514 19 Si 0.715 3.285 20 H -0.207 1.207 21 H -0.212 1.212 22 H -0.200 1.200 23 C -0.026 4.026 24 C -0.132 4.132 25 C -0.150 4.150 26 C -0.171 4.171 27 C -0.146 4.146 28 C -0.136 4.136 29 H 0.099 0.901 30 H 0.110 0.890 31 H 0.094 0.906 32 H 0.187 0.813 33 H 0.193 0.807 34 H 0.123 0.877 35 H 0.122 0.878 36 H 0.091 0.909 37 H 0.092 0.908 38 H 0.108 0.892 39 H 0.098 0.902 40 H 0.071 0.929 41 H 0.133 0.867 42 H 0.125 0.875 43 H 0.123 0.877 44 H 0.125 0.875 45 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -0.568 3.564 13.900 14.360 hybrid contribution 1.487 -0.915 -0.968 1.996 sum 0.919 2.649 12.931 13.232 Atomic orbital electron populations 1.20246 0.84891 1.04388 1.03560 1.23382 0.95819 0.81267 1.04947 1.70252 1.02331 1.28231 1.20408 1.22287 0.94795 0.92766 1.07769 1.22770 0.86985 0.96986 1.12044 1.45279 1.06742 1.06890 1.54877 1.21623 1.03252 0.79373 0.97346 1.23012 1.01256 0.82075 0.95951 1.86456 1.78743 1.26997 1.36911 1.24095 0.75135 0.90869 0.80223 1.90761 1.45881 1.62265 1.35101 1.21613 1.01123 0.87584 1.02634 1.17914 0.98670 0.89711 0.88063 0.90714 1.20710 0.91164 1.48061 0.94051 0.92926 1.24823 0.95854 0.93881 0.97968 1.69889 1.26132 1.44370 1.11054 0.86684 0.84097 0.77725 0.80025 1.20656 1.21221 1.20030 1.20619 0.91699 0.97717 0.92528 1.20961 0.99368 0.92025 1.00796 1.20990 0.95711 0.96896 1.01378 1.20822 0.95577 0.97843 1.02822 1.20993 0.99313 0.93298 1.01018 1.21091 0.95852 0.96469 1.00142 0.90065 0.89003 0.90609 0.81272 0.80734 0.87688 0.87807 0.90930 0.90815 0.89205 0.90211 0.92928 0.86744 0.87535 0.87696 0.87523 0.86722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.64 10.04 36.00 0.36 -0.28 16 2 C 0.21 2.53 7.90 -155.41 -1.23 1.30 16 3 N -0.49 -6.89 11.25 -10.82 -0.12 -7.01 16 4 C -0.03 -0.34 11.87 -17.81 -0.21 -0.55 16 5 C -0.06 -0.60 11.58 -16.56 -0.19 -0.79 16 6 N -0.45 -5.04 2.75 -113.90 -0.31 -5.36 16 7 C 0.11 1.02 6.06 -4.04 -0.02 1.00 16 8 C 0.05 0.69 5.79 37.16 0.22 0.91 16 9 O -0.37 -5.70 10.22 -39.26 -0.40 -6.10 16 10 C 0.46 8.75 7.71 36.00 0.28 9.03 16 11 O -0.46 -10.79 14.73 -18.75 -0.28 -11.06 16 12 C -0.09 -1.68 5.06 -27.89 -0.14 -1.82 16 13 C 0.08 1.70 1.69 -92.93 -0.16 1.54 16 14 H 0.07 1.94 6.95 -51.93 -0.36 1.58 16 15 C -0.50 -12.94 6.38 -34.44 -0.22 -13.16 16 16 H 0.05 1.35 7.82 -52.49 -0.41 0.94 16 17 C 0.08 2.15 5.45 -17.82 -0.10 2.05 16 18 N -0.88 -24.98 12.85 55.43 0.71 -24.27 16 19 Si 0.89 21.53 29.54 -169.99 -5.02 16.51 16 20 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 21 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 22 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 23 C -0.02 -0.53 4.77 -104.62 -0.50 -1.03 16 24 C -0.11 -2.18 8.86 -39.58 -0.35 -2.53 16 25 C -0.13 -2.25 10.05 -39.58 -0.40 -2.65 16 26 C -0.15 -2.53 10.05 -39.59 -0.40 -2.93 16 27 C -0.13 -2.25 10.05 -39.58 -0.40 -2.65 16 28 C -0.12 -2.36 9.67 -39.58 -0.38 -2.74 16 29 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 31 H 0.08 0.62 7.33 -51.93 -0.38 0.24 16 32 H 0.17 1.58 8.06 -52.49 -0.42 1.15 16 33 H 0.18 1.37 8.06 -52.48 -0.42 0.95 16 34 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 35 H 0.10 0.81 7.94 -51.93 -0.41 0.40 16 36 H 0.07 1.00 7.63 -51.93 -0.40 0.61 16 37 H 0.07 1.08 8.13 -51.93 -0.42 0.66 16 38 H 0.09 1.52 7.76 -51.93 -0.40 1.11 16 39 H 0.08 1.26 8.14 -51.93 -0.42 0.83 16 40 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 41 H 0.11 2.10 7.75 -52.49 -0.41 1.69 16 42 H 0.11 1.53 8.06 -52.49 -0.42 1.10 16 43 H 0.10 1.45 8.06 -52.49 -0.42 1.02 16 44 H 0.11 1.60 8.06 -52.49 -0.42 1.18 16 45 H 0.11 2.32 7.95 -52.49 -0.42 1.91 16 LS Contribution 386.05 15.07 5.82 5.82 Total: -1.00 -32.77 386.05 -10.00 -42.76 By element: Atomic # 1 Polarization: 10.56 SS G_CDS: -6.55 Total: 4.01 kcal Atomic # 6 Polarization: -11.46 SS G_CDS: -3.84 Total: -15.30 kcal Atomic # 7 Polarization: -36.92 SS G_CDS: 0.28 Total: -36.64 kcal Atomic # 8 Polarization: -16.48 SS G_CDS: -0.68 Total: -17.16 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -32.77 -10.00 -42.76 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000795982026.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.215 kcal (2) G-P(sol) polarization free energy of solvation -32.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.996 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.764 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.549 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds