Wall clock time and date at job start Tue Mar 31 2020 15:34:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.35315 * 126.12678 * 2 1 4 4 C 1.39874 * 107.91735 * 180.14040 * 3 2 1 5 5 C 1.50707 * 125.89566 * 179.86477 * 4 3 2 6 6 O 1.45198 * 109.47466 * 359.71584 * 5 4 3 7 7 C 1.34224 * 117.00245 * 180.02562 * 6 5 4 8 8 O 1.20824 * 120.00022 * 0.02562 * 7 6 5 9 9 C 1.50696 * 119.99975 * 180.27819 * 7 6 5 10 10 C 1.52998 * 109.47062 * 179.72416 * 9 7 6 11 11 H 1.09005 * 109.46926 * 304.99682 * 10 9 7 12 12 C 1.50702 * 109.47382 * 64.99878 * 10 9 7 13 13 H 1.08000 * 119.99483 * 29.59727 * 12 10 9 14 14 C 1.37875 * 120.00170 * 209.59650 * 12 10 9 15 15 N 1.31515 * 120.00022 * 4.94237 * 14 12 10 16 16 Si 1.86798 * 120.00014 * 184.95223 * 14 12 10 17 17 H 1.48500 * 109.47437 * 59.99227 * 16 14 12 18 18 H 1.48491 * 109.47206 * 179.97438 * 16 14 12 19 19 H 1.48500 * 109.46902 * 299.99970 * 16 14 12 20 20 C 1.50704 * 109.47497 * 185.00222 * 10 9 7 21 21 C 1.38240 * 119.99348 * 296.77769 * 20 10 9 22 22 C 1.38242 * 119.99501 * 179.80752 * 21 20 10 23 23 C 1.38238 * 119.99840 * 0.39530 * 22 21 20 24 24 C 1.38233 * 120.00125 * 359.85581 * 23 22 21 25 25 C 1.38227 * 120.00363 * 117.04262 * 20 10 9 26 26 N 1.30828 * 108.20382 * 359.60623 * 4 3 2 27 27 N 1.34949 * 126.12621 * 179.70197 * 2 1 3 28 28 C 1.46503 * 126.03367 * 0.02562 * 27 2 1 29 29 H 1.08997 * 109.47597 * 270.29935 * 1 2 3 30 30 H 1.09010 * 109.46678 * 30.29459 * 1 2 3 31 31 H 1.08994 * 109.47069 * 150.28592 * 1 2 3 32 32 H 1.07997 * 126.04297 * 0.02922 * 3 2 1 33 33 H 1.09003 * 109.46907 * 239.71955 * 5 4 3 34 34 H 1.08994 * 109.46947 * 119.72468 * 5 4 3 35 35 H 1.09000 * 109.47133 * 299.72341 * 9 7 6 36 36 H 1.09005 * 109.47243 * 59.72833 * 9 7 6 37 37 H 0.97005 * 119.99831 * 179.97438 * 15 14 12 38 38 H 1.07991 * 120.00535 * 359.97438 * 21 20 10 39 39 H 1.07994 * 119.99599 * 180.22829 * 22 21 20 40 40 H 1.07996 * 119.99400 * 179.83413 * 23 22 21 41 41 H 1.08000 * 119.99581 * 179.97438 * 24 23 22 42 42 H 1.08001 * 120.00003 * 359.97438 * 25 20 10 43 43 H 1.09001 * 109.46835 * 270.01844 * 28 27 2 44 44 H 1.08997 * 109.47535 * 30.01886 * 28 27 2 45 45 H 1.09001 * 109.46940 * 150.02401 * 28 27 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3048 1.0930 0.0000 4 6 3.6335 0.6559 -0.0033 5 6 4.8543 1.5395 -0.0073 6 8 4.4439 2.9322 -0.0141 7 6 5.4187 3.8548 -0.0189 8 8 6.5768 3.5101 -0.0179 9 6 5.0689 5.3206 -0.0197 10 6 6.3536 6.1515 -0.0185 11 1 6.9779 5.8541 0.8242 12 6 7.1030 5.9198 -1.3053 13 1 6.5630 5.6755 -2.2081 14 6 8.4779 6.0196 -1.3299 15 7 9.1428 6.2206 -0.2132 16 14 9.3964 5.8695 -2.9496 17 1 8.9424 6.9369 -3.8769 18 1 10.8543 6.0123 -2.7069 19 1 9.1222 4.5405 -3.5527 20 6 6.0067 7.6129 0.1046 21 6 5.2738 8.2352 -0.8887 22 6 4.9522 9.5748 -0.7740 23 6 5.3703 10.2939 0.3301 24 6 6.1076 9.6728 1.3208 25 6 6.4259 8.3323 1.2079 26 7 3.6334 -0.6524 0.0034 27 7 2.3026 -1.0900 0.0057 28 6 1.8538 -2.4846 0.0124 29 1 -0.3634 0.0054 1.0276 30 1 -0.3633 0.8874 -0.5185 31 1 -0.3633 -0.8925 -0.5094 32 1 1.9741 2.1211 0.0004 33 1 5.4500 1.3320 -0.8962 34 1 5.4498 1.3404 0.8837 35 1 4.4858 5.5545 -0.9104 36 1 4.4838 5.5551 0.8697 37 1 10.1101 6.2904 -0.2305 38 1 4.9503 7.6744 -1.7530 39 1 4.3765 10.0601 -1.5482 40 1 5.1213 11.3410 0.4184 41 1 6.4346 10.2348 2.1832 42 1 7.0017 7.8470 1.9821 43 1 1.7418 -2.8252 1.0417 44 1 0.8957 -2.5604 -0.5017 45 1 2.5901 -3.1056 -0.4977 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000795990085.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:34:35 Heat of formation + Delta-G solvation = 12.878885 kcal Electronic energy + Delta-G solvation = -26841.401475 eV Core-core repulsion = 23018.699653 eV Total energy + Delta-G solvation = -3822.701823 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.36047 -39.65952 -38.34255 -36.01719 -34.02964 -33.82072 -32.14112 -31.51399 -30.01407 -29.43143 -28.43530 -27.17139 -25.90199 -25.05741 -22.91441 -21.65716 -20.88925 -20.12167 -19.64276 -19.08652 -16.96209 -16.74681 -16.53960 -16.08313 -15.80121 -15.50020 -15.39179 -14.46652 -14.22529 -14.14914 -13.88788 -13.73103 -13.56422 -13.43355 -13.02659 -12.67737 -12.63711 -12.52756 -12.36756 -12.26309 -12.00594 -11.79105 -11.64576 -11.61323 -10.86493 -10.76781 -10.61459 -10.59988 -10.27851 -10.26464 -10.07754 -9.56651 -9.40285 -9.11460 -9.07498 -8.53186 -8.37285 -8.04548 -7.64644 -5.95888 -3.96720 1.72548 2.24593 2.28746 2.34087 2.71599 3.18984 3.28238 3.38798 3.42230 3.45033 4.36597 4.44820 4.49902 4.73790 4.76832 4.82141 4.91584 5.11643 5.21355 5.38047 5.44873 5.51848 5.53285 5.56958 5.66677 5.72941 5.77575 5.83361 5.85267 6.07788 6.13950 6.17864 6.28576 6.40867 6.50849 6.54855 6.71150 6.89066 6.91844 6.99989 7.17079 7.31107 7.42147 7.50937 7.63078 7.84603 7.92753 8.02440 8.32788 8.71933 9.02889 9.65410 11.13848 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.012964 B = 0.002896 C = 0.002516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2159.261975 B = 9665.911491 C =11128.260031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C 0.073 3.927 3 C -0.245 4.245 4 C 0.080 3.920 5 C 0.151 3.849 6 O -0.367 6.367 7 C 0.458 3.542 8 O -0.463 6.463 9 C -0.092 4.092 10 C 0.075 3.925 11 H 0.075 0.925 12 C -0.501 4.501 13 H 0.053 0.947 14 C 0.078 3.922 15 N -0.879 5.879 16 Si 0.886 3.114 17 H -0.277 1.277 18 H -0.288 1.288 19 H -0.277 1.277 20 C -0.024 4.024 21 C -0.113 4.113 22 C -0.132 4.132 23 C -0.153 4.153 24 C -0.129 4.129 25 C -0.117 4.117 26 N -0.291 5.291 27 N -0.376 5.376 28 C 0.103 3.897 29 H 0.079 0.921 30 H 0.087 0.913 31 H 0.067 0.933 32 H 0.155 0.845 33 H 0.087 0.913 34 H 0.086 0.914 35 H 0.089 0.911 36 H 0.079 0.921 37 H 0.261 0.739 38 H 0.115 0.885 39 H 0.106 0.894 40 H 0.104 0.896 41 H 0.106 0.894 42 H 0.115 0.885 43 H 0.073 0.927 44 H 0.085 0.915 45 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.657 -9.005 2.195 19.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.054 4.054 3 C -0.274 4.274 4 C -0.086 4.086 5 C 0.075 3.925 6 O -0.286 6.286 7 C 0.298 3.702 8 O -0.345 6.345 9 C -0.130 4.130 10 C 0.056 3.944 11 H 0.093 0.907 12 C -0.538 4.538 13 H 0.071 0.929 14 C -0.125 4.125 15 N -0.516 5.516 16 Si 0.714 3.286 17 H -0.203 1.203 18 H -0.213 1.213 19 H -0.203 1.203 20 C -0.024 4.024 21 C -0.131 4.131 22 C -0.150 4.150 23 C -0.172 4.172 24 C -0.147 4.147 25 C -0.136 4.136 26 N -0.115 5.115 27 N -0.160 5.160 28 C -0.039 4.039 29 H 0.098 0.902 30 H 0.105 0.895 31 H 0.086 0.914 32 H 0.172 0.828 33 H 0.105 0.895 34 H 0.104 0.896 35 H 0.107 0.893 36 H 0.097 0.903 37 H 0.070 0.930 38 H 0.133 0.867 39 H 0.124 0.876 40 H 0.122 0.878 41 H 0.124 0.876 42 H 0.133 0.867 43 H 0.091 0.909 44 H 0.104 0.896 45 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -16.406 -10.324 2.278 19.517 hybrid contribution 0.341 0.527 -1.003 1.183 sum -16.065 -9.797 1.275 18.860 Atomic orbital electron populations 1.20428 0.87251 1.03752 1.03269 1.21128 0.94694 0.87282 1.02298 1.21128 0.91118 0.99479 1.15654 1.21858 0.95653 0.91356 0.99683 1.20570 0.90632 0.77683 1.03640 1.86447 1.41007 1.15416 1.85683 1.23998 0.83765 0.89003 0.73416 1.90746 1.20349 1.81413 1.41978 1.21582 1.02227 0.86228 1.02922 1.17913 0.90049 0.85250 1.01148 0.90696 1.20687 0.91277 1.48172 0.93679 0.92926 1.24817 0.97666 0.94226 0.95818 1.69887 1.07510 1.48401 1.25765 0.86755 0.78815 0.78543 0.84488 1.20312 1.21349 1.20275 1.20642 0.91501 0.98902 0.91395 1.20972 0.99261 0.94081 0.98790 1.20985 1.01360 0.94914 0.97755 1.20812 1.01763 0.98819 0.95768 1.20984 0.99701 0.95265 0.98719 1.21090 1.00063 0.93885 0.98525 1.77281 0.96436 1.11487 1.26330 1.48381 1.03572 1.05941 1.58056 1.21801 1.00860 0.77999 1.03216 0.90233 0.89452 0.91369 0.82758 0.89452 0.89570 0.89258 0.90285 0.92963 0.86709 0.87585 0.87768 0.87588 0.86724 0.90863 0.89631 0.89320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.57 10.12 36.01 0.36 -0.21 16 2 C 0.07 0.81 6.93 -82.26 -0.57 0.24 16 3 C -0.24 -3.33 10.06 -40.01 -0.40 -3.73 16 4 C 0.08 1.24 7.19 -82.40 -0.59 0.65 16 5 C 0.15 2.50 6.09 36.01 0.22 2.71 16 6 O -0.37 -6.50 9.56 -39.24 -0.38 -6.88 16 7 C 0.46 9.41 7.71 36.00 0.28 9.69 16 8 O -0.46 -11.37 14.73 -18.75 -0.28 -11.64 16 9 C -0.09 -1.78 5.06 -27.89 -0.14 -1.92 16 10 C 0.08 1.76 1.69 -92.92 -0.16 1.61 16 11 H 0.07 2.00 6.95 -51.93 -0.36 1.64 16 12 C -0.50 -13.26 6.38 -34.44 -0.22 -13.48 16 13 H 0.05 1.38 7.82 -52.49 -0.41 0.97 16 14 C 0.08 2.19 5.45 -17.82 -0.10 2.09 16 15 N -0.88 -25.50 12.85 55.43 0.71 -24.79 16 16 Si 0.89 21.96 29.54 -169.99 -5.02 16.93 16 17 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 18 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 19 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 20 C -0.02 -0.52 4.77 -104.62 -0.50 -1.02 16 21 C -0.11 -2.24 8.86 -39.58 -0.35 -2.59 16 22 C -0.13 -2.33 10.05 -39.58 -0.40 -2.73 16 23 C -0.15 -2.63 10.05 -39.58 -0.40 -3.03 16 24 C -0.13 -2.33 10.05 -39.58 -0.40 -2.73 16 25 C -0.12 -2.44 9.67 -39.59 -0.38 -2.82 16 26 N -0.29 -4.45 12.58 33.67 0.42 -4.03 16 27 N -0.38 -4.46 4.01 -63.88 -0.26 -4.71 16 28 C 0.10 0.70 11.27 59.85 0.67 1.37 16 29 H 0.08 0.43 8.14 -51.93 -0.42 0.00 16 30 H 0.09 0.50 8.14 -51.92 -0.42 0.08 16 31 H 0.07 0.31 7.08 -51.93 -0.37 -0.05 16 32 H 0.15 1.96 7.90 -52.49 -0.41 1.55 16 33 H 0.09 1.47 8.13 -51.93 -0.42 1.05 16 34 H 0.09 1.41 8.13 -51.93 -0.42 0.99 16 35 H 0.09 1.60 7.76 -51.93 -0.40 1.20 16 36 H 0.08 1.34 8.14 -51.93 -0.42 0.91 16 37 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 38 H 0.11 2.19 7.75 -52.49 -0.41 1.78 16 39 H 0.11 1.58 8.06 -52.49 -0.42 1.15 16 40 H 0.10 1.49 8.06 -52.49 -0.42 1.06 16 41 H 0.11 1.65 8.06 -52.49 -0.42 1.22 16 42 H 0.11 2.39 7.95 -52.49 -0.42 1.98 16 43 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 44 H 0.09 0.35 7.05 -51.93 -0.37 -0.02 16 45 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 LS Contribution 385.69 15.07 5.81 5.81 Total: -1.00 -33.56 385.69 -8.56 -42.12 By element: Atomic # 1 Polarization: 9.59 SS G_CDS: -6.51 Total: 3.08 kcal Atomic # 6 Polarization: -12.82 SS G_CDS: -3.07 Total: -15.89 kcal Atomic # 7 Polarization: -34.41 SS G_CDS: 0.88 Total: -33.53 kcal Atomic # 8 Polarization: -17.87 SS G_CDS: -0.65 Total: -18.52 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -33.56 -8.56 -42.12 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000795990085.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.996 kcal (2) G-P(sol) polarization free energy of solvation -33.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.439 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.560 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.117 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.879 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds