Wall clock time and date at job start Tue Mar 31 2020 15:34:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.35315 * 126.12678 * 2 1 4 4 C 1.39874 * 107.91735 * 180.14040 * 3 2 1 5 5 C 1.50707 * 125.89566 * 179.86477 * 4 3 2 6 6 O 1.45198 * 109.47466 * 359.71584 * 5 4 3 7 7 C 1.34224 * 117.00245 * 180.02562 * 6 5 4 8 8 O 1.20824 * 120.00022 * 0.02562 * 7 6 5 9 9 C 1.50696 * 119.99975 * 180.27819 * 7 6 5 10 10 C 1.52998 * 109.47062 * 179.72416 * 9 7 6 11 11 H 1.09005 * 109.46926 * 304.99682 * 10 9 7 12 12 C 1.50702 * 109.47382 * 64.99878 * 10 9 7 13 13 H 1.08000 * 119.99483 * 29.59727 * 12 10 9 14 14 C 1.37875 * 120.00170 * 209.59650 * 12 10 9 15 15 N 1.31515 * 120.00022 * 4.94237 * 14 12 10 16 16 Si 1.86798 * 120.00014 * 184.95223 * 14 12 10 17 17 H 1.48500 * 109.47437 * 59.99227 * 16 14 12 18 18 H 1.48491 * 109.47206 * 179.97438 * 16 14 12 19 19 H 1.48500 * 109.46902 * 299.99970 * 16 14 12 20 20 C 1.50704 * 109.47497 * 185.00222 * 10 9 7 21 21 C 1.38240 * 119.99348 * 296.77769 * 20 10 9 22 22 C 1.38242 * 119.99501 * 179.80752 * 21 20 10 23 23 C 1.38238 * 119.99840 * 0.39530 * 22 21 20 24 24 C 1.38233 * 120.00125 * 359.85581 * 23 22 21 25 25 C 1.38227 * 120.00363 * 117.04262 * 20 10 9 26 26 N 1.30828 * 108.20382 * 359.60623 * 4 3 2 27 27 N 1.34949 * 126.12621 * 179.70197 * 2 1 3 28 28 C 1.46503 * 126.03367 * 0.02562 * 27 2 1 29 29 H 1.08997 * 109.47597 * 270.29935 * 1 2 3 30 30 H 1.09010 * 109.46678 * 30.29459 * 1 2 3 31 31 H 1.08994 * 109.47069 * 150.28592 * 1 2 3 32 32 H 1.07997 * 126.04297 * 0.02922 * 3 2 1 33 33 H 1.09003 * 109.46907 * 239.71955 * 5 4 3 34 34 H 1.08994 * 109.46947 * 119.72468 * 5 4 3 35 35 H 1.09000 * 109.47133 * 299.72341 * 9 7 6 36 36 H 1.09005 * 109.47243 * 59.72833 * 9 7 6 37 37 H 0.97005 * 119.99831 * 179.97438 * 15 14 12 38 38 H 1.07991 * 120.00535 * 359.97438 * 21 20 10 39 39 H 1.07994 * 119.99599 * 180.22829 * 22 21 20 40 40 H 1.07996 * 119.99400 * 179.83413 * 23 22 21 41 41 H 1.08000 * 119.99581 * 179.97438 * 24 23 22 42 42 H 1.08001 * 120.00003 * 359.97438 * 25 20 10 43 43 H 1.09001 * 109.46835 * 270.01844 * 28 27 2 44 44 H 1.08997 * 109.47535 * 30.01886 * 28 27 2 45 45 H 1.09001 * 109.46940 * 150.02401 * 28 27 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3048 1.0930 0.0000 4 6 3.6335 0.6559 -0.0033 5 6 4.8543 1.5395 -0.0073 6 8 4.4439 2.9322 -0.0141 7 6 5.4187 3.8548 -0.0189 8 8 6.5768 3.5101 -0.0179 9 6 5.0689 5.3206 -0.0197 10 6 6.3536 6.1515 -0.0185 11 1 6.9779 5.8541 0.8242 12 6 7.1030 5.9198 -1.3053 13 1 6.5630 5.6755 -2.2081 14 6 8.4779 6.0196 -1.3299 15 7 9.1428 6.2206 -0.2132 16 14 9.3964 5.8695 -2.9496 17 1 8.9424 6.9369 -3.8769 18 1 10.8543 6.0123 -2.7069 19 1 9.1222 4.5405 -3.5527 20 6 6.0067 7.6129 0.1046 21 6 5.2738 8.2352 -0.8887 22 6 4.9522 9.5748 -0.7740 23 6 5.3703 10.2939 0.3301 24 6 6.1076 9.6728 1.3208 25 6 6.4259 8.3323 1.2079 26 7 3.6334 -0.6524 0.0034 27 7 2.3026 -1.0900 0.0057 28 6 1.8538 -2.4846 0.0124 29 1 -0.3634 0.0054 1.0276 30 1 -0.3633 0.8874 -0.5185 31 1 -0.3633 -0.8925 -0.5094 32 1 1.9741 2.1211 0.0004 33 1 5.4500 1.3320 -0.8962 34 1 5.4498 1.3404 0.8837 35 1 4.4858 5.5545 -0.9104 36 1 4.4838 5.5551 0.8697 37 1 10.1101 6.2904 -0.2305 38 1 4.9503 7.6744 -1.7530 39 1 4.3765 10.0601 -1.5482 40 1 5.1213 11.3410 0.4184 41 1 6.4346 10.2348 2.1832 42 1 7.0017 7.8470 1.9821 43 1 1.7418 -2.8252 1.0417 44 1 0.8957 -2.5604 -0.5017 45 1 2.5901 -3.1056 -0.4977 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000795990085.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:34:34 Heat of formation + Delta-G solvation = -5.303653 kcal Electronic energy + Delta-G solvation = -26842.189929 eV Core-core repulsion = 23018.699653 eV Total energy + Delta-G solvation = -3823.490277 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.34384 -41.29244 -39.85620 -37.61226 -35.81608 -34.79463 -33.46248 -32.89996 -31.48152 -30.84053 -29.69521 -27.94759 -27.62048 -26.20188 -24.62213 -23.14368 -22.27274 -21.31689 -20.98621 -20.38093 -18.60187 -18.41386 -17.79510 -17.49098 -17.22993 -16.82155 -16.57571 -16.35832 -15.66432 -15.47244 -15.03520 -14.93794 -14.76060 -14.41729 -14.13420 -13.94832 -13.91595 -13.68462 -13.64026 -13.31819 -13.21607 -13.18734 -13.09692 -12.80846 -12.75958 -12.56070 -12.51231 -11.83747 -11.79304 -11.70625 -11.64281 -11.36825 -11.21178 -10.94746 -10.46505 -10.10944 -9.51642 -9.49280 -9.20142 -8.05091 -6.09197 0.77637 0.80461 0.83906 1.31326 1.38414 1.40688 1.45475 1.50821 1.65549 1.94957 2.45895 3.18987 3.34296 3.42334 3.70575 3.98870 4.03722 4.17853 4.22638 4.26376 4.36467 4.37988 4.40146 4.42238 4.55160 4.58625 4.62922 4.68018 4.74186 4.79685 4.85544 4.92629 4.98342 5.11176 5.14088 5.23722 5.39129 5.48401 5.51631 5.58939 5.64557 5.77874 5.86312 5.96663 6.13319 6.16260 6.39738 6.47653 6.60793 6.98060 7.07267 7.54096 9.03928 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.012964 B = 0.002896 C = 0.002516 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2159.261975 B = 9665.911491 C =11128.260031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C 0.089 3.911 3 C -0.276 4.276 4 C 0.058 3.942 5 C 0.153 3.847 6 O -0.352 6.352 7 C 0.463 3.537 8 O -0.511 6.511 9 C -0.087 4.087 10 C 0.079 3.921 11 H 0.031 0.969 12 C -0.496 4.496 13 H 0.050 0.950 14 C 0.025 3.975 15 N -0.914 5.914 16 Si 0.934 3.066 17 H -0.266 1.266 18 H -0.289 1.289 19 H -0.281 1.281 20 C -0.048 4.048 21 C -0.125 4.125 22 C -0.127 4.127 23 C -0.145 4.145 24 C -0.129 4.129 25 C -0.141 4.141 26 N -0.328 5.328 27 N -0.373 5.373 28 C 0.090 3.910 29 H 0.096 0.904 30 H 0.096 0.904 31 H 0.094 0.906 32 H 0.157 0.843 33 H 0.077 0.923 34 H 0.080 0.920 35 H 0.111 0.889 36 H 0.107 0.893 37 H 0.255 0.745 38 H 0.118 0.882 39 H 0.141 0.859 40 H 0.143 0.857 41 H 0.132 0.868 42 H 0.096 0.904 43 H 0.089 0.911 44 H 0.121 0.879 45 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.303 -8.223 1.378 22.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.039 4.039 3 C -0.305 4.305 4 C -0.106 4.106 5 C 0.077 3.923 6 O -0.270 6.270 7 C 0.306 3.694 8 O -0.397 6.397 9 C -0.124 4.124 10 C 0.060 3.940 11 H 0.049 0.951 12 C -0.534 4.534 13 H 0.068 0.932 14 C -0.174 4.174 15 N -0.553 5.553 16 Si 0.761 3.239 17 H -0.191 1.191 18 H -0.215 1.215 19 H -0.206 1.206 20 C -0.048 4.048 21 C -0.143 4.143 22 C -0.145 4.145 23 C -0.163 4.163 24 C -0.147 4.147 25 C -0.159 4.159 26 N -0.153 5.153 27 N -0.156 5.156 28 C -0.050 4.050 29 H 0.115 0.885 30 H 0.115 0.885 31 H 0.112 0.888 32 H 0.175 0.825 33 H 0.095 0.905 34 H 0.098 0.902 35 H 0.129 0.871 36 H 0.125 0.875 37 H 0.064 0.936 38 H 0.136 0.864 39 H 0.159 0.841 40 H 0.161 0.839 41 H 0.150 0.850 42 H 0.114 0.886 43 H 0.108 0.892 44 H 0.139 0.861 45 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -20.088 -9.554 1.449 22.291 hybrid contribution 1.295 0.209 -0.699 1.486 sum -18.793 -9.344 0.750 21.001 Atomic orbital electron populations 1.20629 0.83400 1.05545 1.04846 1.21805 0.96752 0.86139 0.99241 1.21311 0.90683 1.00667 1.17793 1.21670 0.95811 0.91608 1.01463 1.20530 0.91744 0.77084 1.02915 1.86425 1.39696 1.15914 1.84926 1.24258 0.83327 0.89861 0.71990 1.90734 1.22320 1.82213 1.44439 1.21525 1.00886 0.84793 1.05205 1.17693 0.90851 0.87527 0.97942 0.95112 1.21010 0.91473 1.46275 0.94667 0.93162 1.25489 0.98826 0.94957 0.98169 1.70033 1.07131 1.50845 1.27302 0.85983 0.77748 0.78434 0.81719 1.19056 1.21471 1.20642 1.20441 0.93696 0.97651 0.93019 1.21079 0.99474 0.95463 0.98313 1.21380 1.00578 0.93868 0.98647 1.21278 0.99911 1.00557 0.94578 1.21283 0.99248 0.94101 1.00055 1.21109 1.00959 0.95468 0.98413 1.77175 0.99146 1.11340 1.27664 1.48810 1.02460 1.07907 1.56457 1.22261 1.02399 0.75408 1.04884 0.88536 0.88497 0.88772 0.82516 0.90518 0.90181 0.87141 0.87487 0.93604 0.86370 0.84102 0.83882 0.85028 0.88613 0.89239 0.86063 0.89305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.78 10.12 71.24 0.72 -0.06 16 2 C 0.09 1.81 6.93 41.40 0.29 2.10 16 3 C -0.28 -7.41 10.06 21.99 0.22 -7.19 16 4 C 0.06 1.87 7.19 43.11 0.31 2.18 16 5 C 0.15 5.40 6.09 71.24 0.43 5.83 16 6 O -0.35 -12.92 9.56 -51.36 -0.49 -13.41 16 7 C 0.46 19.83 7.71 71.23 0.55 20.37 16 8 O -0.51 -26.67 14.73 21.97 0.32 -26.34 16 9 C -0.09 -3.42 5.06 29.85 0.15 -3.27 16 10 C 0.08 3.83 1.69 -12.28 -0.02 3.81 16 11 H 0.03 1.76 6.95 -2.38 -0.02 1.74 16 12 C -0.50 -27.07 6.38 25.60 0.16 -26.91 16 13 H 0.05 2.69 7.82 -2.91 -0.02 2.67 16 14 C 0.02 1.43 5.45 84.65 0.46 1.90 16 15 N -0.91 -55.68 12.85 21.45 0.28 -55.40 16 16 Si 0.93 46.19 29.54 68.60 2.03 48.21 16 17 H -0.27 -12.48 7.11 99.48 0.71 -11.77 16 18 H -0.29 -14.19 7.11 99.48 0.71 -13.49 16 19 H -0.28 -13.87 7.11 99.48 0.71 -13.16 16 20 C -0.05 -2.09 4.77 -19.87 -0.09 -2.18 16 21 C -0.13 -4.79 8.86 22.27 0.20 -4.59 16 22 C -0.13 -4.04 10.05 22.27 0.22 -3.81 16 23 C -0.15 -4.42 10.05 22.27 0.22 -4.20 16 24 C -0.13 -4.43 10.05 22.27 0.22 -4.21 16 25 C -0.14 -5.95 9.67 22.27 0.22 -5.73 16 26 N -0.33 -10.18 12.58 -47.38 -0.60 -10.78 16 27 N -0.37 -8.28 4.01 -356.03 -1.43 -9.71 16 28 C 0.09 0.98 11.27 127.77 1.44 2.42 16 29 H 0.10 0.64 8.14 -2.39 -0.02 0.62 16 30 H 0.10 0.76 8.14 -2.38 -0.02 0.74 16 31 H 0.09 0.40 7.08 -2.39 -0.02 0.39 16 32 H 0.16 3.94 7.90 -2.91 -0.02 3.92 16 33 H 0.08 2.81 8.13 -2.39 -0.02 2.79 16 34 H 0.08 2.85 8.13 -2.39 -0.02 2.84 16 35 H 0.11 3.89 7.76 -2.39 -0.02 3.87 16 36 H 0.11 3.60 8.14 -2.38 -0.02 3.59 16 37 H 0.26 15.07 8.31 -92.70 -0.77 14.30 16 38 H 0.12 4.34 7.75 -2.92 -0.02 4.31 16 39 H 0.14 3.49 8.06 -2.91 -0.02 3.47 16 40 H 0.14 3.28 8.06 -2.91 -0.02 3.25 16 41 H 0.13 3.76 8.06 -2.91 -0.02 3.74 16 42 H 0.10 4.27 7.95 -2.91 -0.02 4.24 16 43 H 0.09 0.73 8.14 -2.39 -0.02 0.71 16 44 H 0.12 0.46 7.05 -2.39 -0.02 0.45 16 45 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 Total: -1.00 -77.59 385.69 6.80 -70.79 By element: Atomic # 1 Polarization: 19.19 SS G_CDS: 0.98 Total: 20.18 kcal Atomic # 6 Polarization: -29.25 SS G_CDS: 5.71 Total: -23.55 kcal Atomic # 7 Polarization: -74.14 SS G_CDS: -1.75 Total: -75.89 kcal Atomic # 8 Polarization: -39.59 SS G_CDS: -0.17 Total: -39.75 kcal Atomic # 14 Polarization: 46.19 SS G_CDS: 2.03 Total: 48.21 kcal Total: -77.59 6.80 -70.79 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000795990085.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.490 kcal (2) G-P(sol) polarization free energy of solvation -77.593 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.103 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.800 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.794 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.304 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds