Wall clock time and date at job start Tue Mar 31 2020 15:29:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.30872 * 125.87309 * 2 1 4 4 N 1.40086 * 108.21690 * 180.13694 * 3 2 1 5 5 C 1.40181 * 126.05683 * 179.88080 * 4 3 2 6 6 C 1.38845 * 120.06320 * 324.69146 * 5 4 3 7 7 C 1.38125 * 119.92894 * 179.97438 * 6 5 4 8 8 C 1.38273 * 120.06983 * 0.02562 * 7 6 5 9 9 C 1.38285 * 120.13300 * 359.97438 * 8 7 6 10 10 C 1.38118 * 120.06661 * 0.02562 * 9 8 7 11 11 C 1.35225 * 107.89307 * 359.61755 * 4 3 2 12 12 C 1.50696 * 126.14571 * 180.22261 * 11 4 3 13 13 C 1.35322 * 107.71276 * 0.22679 * 11 4 3 14 14 C 1.50696 * 126.03534 * 180.02562 * 13 11 4 15 15 C 1.50695 * 109.47411 * 89.99774 * 14 13 11 16 16 O 1.20832 * 119.99973 * 0.02562 * 15 14 13 17 17 O 1.34230 * 120.00421 * 179.97438 * 15 14 13 18 18 C 1.45199 * 117.00249 * 180.02562 * 17 15 14 19 19 C 1.53000 * 109.47194 * 180.02562 * 18 17 15 20 20 C 1.50692 * 109.47137 * 179.97438 * 19 18 17 21 21 H 1.08001 * 120.00342 * 359.97438 * 20 19 18 22 22 C 1.37882 * 120.00116 * 179.97438 * 20 19 18 23 23 N 1.31514 * 120.00122 * 180.02562 * 22 20 19 24 24 Si 1.86800 * 119.99651 * 0.02562 * 22 20 19 25 25 H 1.48502 * 109.47208 * 90.00081 * 24 22 20 26 26 H 1.48506 * 109.46900 * 209.99972 * 24 22 20 27 27 H 1.48496 * 109.47195 * 329.99582 * 24 22 20 28 28 H 1.09001 * 109.47122 * 270.27963 * 1 2 3 29 29 H 1.08993 * 109.47584 * 30.28019 * 1 2 3 30 30 H 1.08996 * 109.46874 * 150.28556 * 1 2 3 31 31 H 1.07998 * 120.03278 * 0.25553 * 6 5 4 32 32 H 1.08000 * 119.96142 * 179.97438 * 7 6 5 33 33 H 1.07998 * 119.93705 * 179.97438 * 8 7 6 34 34 H 1.07999 * 119.96284 * 180.02562 * 9 8 7 35 35 H 1.08000 * 120.03400 * 179.97438 * 10 9 8 36 36 H 1.09002 * 109.46988 * 90.02670 * 12 11 4 37 37 H 1.09010 * 109.47372 * 210.02610 * 12 11 4 38 38 H 1.09002 * 109.47388 * 330.02477 * 12 11 4 39 39 H 1.09009 * 109.47023 * 209.99935 * 14 13 11 40 40 H 1.09006 * 109.47109 * 329.99481 * 14 13 11 41 41 H 1.09004 * 109.47091 * 299.99874 * 18 17 15 42 42 H 1.08992 * 109.47043 * 59.99966 * 18 17 15 43 43 H 1.08999 * 109.47310 * 300.00253 * 19 18 17 44 44 H 1.09003 * 109.46891 * 59.99793 * 19 18 17 45 45 H 0.97004 * 119.99786 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2740 1.0605 0.0000 4 7 3.6088 0.6356 -0.0032 5 6 4.7388 1.4652 -0.0066 6 6 4.7173 2.6669 -0.7018 7 6 5.8320 3.4825 -0.7028 8 6 6.9687 3.1031 -0.0129 9 6 6.9931 1.9068 0.6804 10 6 5.8816 1.0870 0.6852 11 6 3.6144 -0.7166 0.0035 12 6 4.8350 -1.6004 0.0078 13 6 2.3271 -1.1337 0.0056 14 6 1.8593 -2.5662 0.0132 15 6 1.7032 -3.0361 1.4365 16 8 1.9464 -2.2847 2.3509 17 8 1.2930 -4.2891 1.6884 18 6 1.1646 -4.6729 3.0829 19 6 0.6904 -6.1249 3.1707 20 6 0.5577 -6.5233 4.6179 21 1 0.7888 -5.8122 5.3972 22 6 0.1411 -7.7958 4.9473 23 7 0.0248 -8.1434 6.2103 24 14 -0.2581 -9.0259 3.5994 25 1 0.9669 -9.7869 3.2450 26 1 -1.3027 -9.9655 4.0803 27 1 -0.7559 -8.3034 2.4014 28 1 -0.3633 0.0050 1.0277 29 1 -0.3634 0.8874 -0.5181 30 1 -0.3633 -0.8925 -0.5094 31 1 3.8283 2.9657 -1.2373 32 1 5.8160 4.4171 -1.2437 33 1 7.8393 3.7422 -0.0155 34 1 7.8822 1.6134 1.2186 35 1 5.9013 0.1527 1.2265 36 1 5.1291 -1.8088 1.0365 37 1 4.6075 -2.5368 -0.5019 38 1 5.6514 -1.0951 -0.5082 39 1 0.9005 -2.6380 -0.5004 40 1 2.5926 -3.1906 -0.4973 41 1 2.1315 -4.5763 3.5769 42 1 0.4396 -4.0233 3.5732 43 1 -0.2764 -6.2219 2.6766 44 1 1.4157 -6.7742 2.6804 45 1 -0.2680 -9.0387 6.4419 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000804872693.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:29:20 Heat of formation + Delta-G solvation = 5.850790 kcal Electronic energy + Delta-G solvation = -26757.455646 eV Core-core repulsion = 22934.449062 eV Total energy + Delta-G solvation = -3823.006584 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.98127 -39.90649 -39.28987 -36.19359 -34.59289 -33.44793 -33.25984 -31.47051 -31.09233 -30.69131 -29.52108 -27.51176 -26.57931 -24.99703 -23.15907 -22.76521 -21.21836 -20.56045 -19.97531 -19.41370 -17.89009 -17.49575 -16.69603 -16.62084 -16.10010 -15.95283 -15.62275 -14.95530 -14.71191 -14.36049 -14.22633 -14.06620 -13.79124 -13.64142 -13.41812 -13.25801 -13.16452 -12.94882 -12.63339 -12.52653 -12.37470 -12.28135 -12.00538 -11.83319 -11.50889 -11.41460 -11.25993 -10.71127 -10.67777 -10.51138 -10.09789 -9.95209 -9.86618 -9.67530 -9.44165 -9.34352 -8.97788 -8.62247 -8.29128 -6.12726 -4.13804 0.55448 0.89596 1.77926 2.15329 2.39665 2.59811 3.27682 3.30517 3.34693 3.38417 3.39714 4.20933 4.31671 4.38585 4.47406 4.52212 4.67107 4.68973 4.87754 4.92571 4.96318 5.03981 5.16009 5.18293 5.20779 5.24468 5.36823 5.42412 5.51582 5.54029 5.60882 5.70644 5.75621 5.88866 5.90964 5.99498 6.00611 6.02449 6.05454 6.33320 6.46300 6.48949 6.85056 6.97628 7.21633 7.24419 7.49934 7.63226 8.23075 8.40192 8.89169 9.46831 10.99841 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.021929 B = 0.002239 C = 0.002132 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1276.539669 B =12500.408719 C =13131.937041 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.104 3.896 3 N -0.291 5.291 4 N -0.327 5.327 5 C 0.160 3.840 6 C -0.113 4.113 7 C -0.102 4.102 8 C -0.125 4.125 9 C -0.098 4.098 10 C -0.133 4.133 11 C 0.108 3.892 12 C -0.102 4.102 13 C -0.217 4.217 14 C -0.034 4.034 15 C 0.453 3.547 16 O -0.507 6.507 17 O -0.363 6.363 18 C 0.083 3.917 19 C -0.009 4.009 20 C -0.527 4.527 21 H 0.075 0.925 22 C 0.071 3.929 23 N -0.897 5.897 24 Si 0.882 3.118 25 H -0.275 1.275 26 H -0.286 1.286 27 H -0.263 1.263 28 H 0.082 0.918 29 H 0.075 0.925 30 H 0.081 0.919 31 H 0.133 0.867 32 H 0.131 0.869 33 H 0.128 0.872 34 H 0.133 0.867 35 H 0.134 0.866 36 H 0.087 0.913 37 H 0.089 0.911 38 H 0.076 0.924 39 H 0.112 0.888 40 H 0.108 0.892 41 H 0.062 0.938 42 H 0.063 0.937 43 H 0.028 0.972 44 H 0.023 0.977 45 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.934 20.584 -19.238 30.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.063 4.063 3 N -0.111 5.111 4 N -0.102 5.102 5 C 0.069 3.931 6 C -0.133 4.133 7 C -0.120 4.120 8 C -0.144 4.144 9 C -0.117 4.117 10 C -0.153 4.153 11 C -0.016 4.016 12 C -0.160 4.160 13 C -0.227 4.227 14 C -0.073 4.073 15 C 0.295 3.705 16 O -0.395 6.395 17 O -0.280 6.280 18 C 0.011 3.989 19 C -0.047 4.047 20 C -0.565 4.565 21 H 0.093 0.907 22 C -0.131 4.131 23 N -0.535 5.535 24 Si 0.709 3.291 25 H -0.201 1.201 26 H -0.212 1.212 27 H -0.187 1.187 28 H 0.101 0.899 29 H 0.094 0.906 30 H 0.099 0.901 31 H 0.150 0.850 32 H 0.149 0.851 33 H 0.146 0.854 34 H 0.151 0.849 35 H 0.151 0.849 36 H 0.105 0.895 37 H 0.108 0.892 38 H 0.095 0.905 39 H 0.130 0.870 40 H 0.126 0.874 41 H 0.081 0.919 42 H 0.082 0.918 43 H 0.046 0.954 44 H 0.041 0.959 45 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 12.034 21.945 -18.803 31.304 hybrid contribution -0.238 -1.500 -0.214 1.534 sum 11.796 20.445 -19.017 30.312 Atomic orbital electron populations 1.20267 0.86207 1.03437 1.03688 1.22304 0.97035 0.89951 0.97031 1.77440 0.85099 1.22094 1.26432 1.45506 1.04246 1.03317 1.57146 1.17468 0.84667 0.92082 0.98929 1.21020 0.99581 0.93556 0.99124 1.21077 0.92494 0.99415 0.99038 1.21261 0.98501 0.96846 0.97792 1.21036 0.97785 0.94042 0.98807 1.21187 0.92767 1.01800 0.99582 1.20860 0.97004 0.83830 0.99880 1.20700 0.93047 0.98297 1.03921 1.19066 0.91262 0.94791 1.17615 1.19515 1.04626 0.91525 0.91629 1.23563 0.74002 0.80590 0.92349 1.90650 1.46134 1.55492 1.47207 1.86479 1.77427 1.30232 1.33895 1.23336 1.01291 0.98631 0.75665 1.19619 0.97021 0.89452 0.98572 1.20852 1.46602 0.99043 0.90012 0.90712 1.24952 0.94569 0.98077 0.95508 1.69900 1.46941 1.20096 1.16586 0.86742 0.78574 0.81181 0.82649 1.20080 1.21198 1.18716 0.89893 0.90613 0.90070 0.84955 0.85123 0.85390 0.84926 0.84850 0.89460 0.89199 0.90518 0.87004 0.87366 0.91918 0.91817 0.95377 0.95850 0.92454 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.80 10.26 36.01 0.37 -0.43 16 2 C 0.10 1.40 7.22 -82.37 -0.59 0.81 16 3 N -0.29 -4.25 12.34 33.69 0.42 -3.84 16 4 N -0.33 -4.36 3.73 -6.98 -0.03 -4.39 16 5 C 0.16 1.82 6.28 -83.59 -0.52 1.29 16 6 C -0.11 -1.11 9.77 -39.40 -0.38 -1.49 16 7 C -0.10 -0.74 10.04 -39.61 -0.40 -1.14 16 8 C -0.13 -0.83 10.04 -39.55 -0.40 -1.22 16 9 C -0.10 -0.71 10.04 -39.61 -0.40 -1.11 16 10 C -0.13 -1.25 8.28 -39.40 -0.33 -1.58 16 11 C 0.11 1.35 6.76 -82.14 -0.56 0.80 16 12 C -0.10 -0.92 8.38 36.00 0.30 -0.62 16 13 C -0.22 -2.83 4.60 -105.03 -0.48 -3.31 16 14 C -0.03 -0.40 5.89 -29.04 -0.17 -0.57 16 15 C 0.45 7.46 7.95 36.00 0.29 7.75 16 16 O -0.51 -10.00 15.78 -18.75 -0.30 -10.29 16 17 O -0.36 -6.73 10.22 -39.26 -0.40 -7.13 16 18 C 0.08 1.78 5.40 37.16 0.20 1.99 16 19 C -0.01 -0.22 4.42 -27.89 -0.12 -0.34 16 20 C -0.53 -14.99 9.66 -34.44 -0.33 -15.32 16 21 H 0.07 2.28 7.99 -52.49 -0.42 1.87 16 22 C 0.07 2.05 5.47 -17.82 -0.10 1.96 16 23 N -0.90 -27.36 13.96 55.43 0.77 -26.58 16 24 Si 0.88 21.31 27.47 -169.99 -4.67 16.64 16 25 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 26 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 27 H -0.26 -6.09 6.54 56.52 0.37 -5.72 16 28 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 29 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.08 0.67 7.25 -51.93 -0.38 0.30 16 31 H 0.13 1.30 8.06 -52.49 -0.42 0.88 16 32 H 0.13 0.64 8.06 -52.49 -0.42 0.22 16 33 H 0.13 0.53 8.06 -52.49 -0.42 0.10 16 34 H 0.13 0.65 8.06 -52.49 -0.42 0.23 16 35 H 0.13 1.20 6.09 -52.49 -0.32 0.88 16 36 H 0.09 0.80 7.74 -51.93 -0.40 0.40 16 37 H 0.09 0.67 7.15 -51.92 -0.37 0.30 16 38 H 0.08 0.58 6.89 -51.93 -0.36 0.22 16 39 H 0.11 1.05 7.26 -51.92 -0.38 0.67 16 40 H 0.11 0.99 7.15 -51.93 -0.37 0.62 16 41 H 0.06 1.36 8.13 -51.93 -0.42 0.93 16 42 H 0.06 1.39 8.13 -51.93 -0.42 0.96 16 43 H 0.03 0.67 7.20 -51.93 -0.37 0.30 16 44 H 0.02 0.55 7.57 -51.93 -0.39 0.15 16 45 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 LS Contribution 380.10 15.07 5.73 5.73 Total: -1.00 -35.32 380.10 -8.41 -43.73 By element: Atomic # 1 Polarization: 5.00 SS G_CDS: -6.31 Total: -1.30 kcal Atomic # 6 Polarization: -8.93 SS G_CDS: -3.63 Total: -12.56 kcal Atomic # 7 Polarization: -35.97 SS G_CDS: 1.16 Total: -34.81 kcal Atomic # 8 Polarization: -16.73 SS G_CDS: -0.70 Total: -17.42 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -4.67 Total: 16.64 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -35.32 -8.41 -43.73 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000804872693.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.580 kcal (2) G-P(sol) polarization free energy of solvation -35.317 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.729 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.851 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds