Wall clock time and date at job start Tue Mar 31 2020 15:29:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.30872 * 125.87309 * 2 1 4 4 N 1.40086 * 108.21690 * 180.13694 * 3 2 1 5 5 C 1.40181 * 126.05683 * 179.88080 * 4 3 2 6 6 C 1.38845 * 120.06320 * 324.69146 * 5 4 3 7 7 C 1.38125 * 119.92894 * 179.97438 * 6 5 4 8 8 C 1.38273 * 120.06983 * 0.02562 * 7 6 5 9 9 C 1.38285 * 120.13300 * 359.97438 * 8 7 6 10 10 C 1.38118 * 120.06661 * 0.02562 * 9 8 7 11 11 C 1.35225 * 107.89307 * 359.61755 * 4 3 2 12 12 C 1.50696 * 126.14571 * 180.22261 * 11 4 3 13 13 C 1.35322 * 107.71276 * 0.22679 * 11 4 3 14 14 C 1.50696 * 126.03534 * 180.02562 * 13 11 4 15 15 C 1.50695 * 109.47411 * 89.99774 * 14 13 11 16 16 O 1.20832 * 119.99973 * 0.02562 * 15 14 13 17 17 O 1.34230 * 120.00421 * 179.97438 * 15 14 13 18 18 C 1.45199 * 117.00249 * 180.02562 * 17 15 14 19 19 C 1.53000 * 109.47194 * 180.02562 * 18 17 15 20 20 C 1.50692 * 109.47137 * 179.97438 * 19 18 17 21 21 H 1.08001 * 120.00342 * 359.97438 * 20 19 18 22 22 C 1.37882 * 120.00116 * 179.97438 * 20 19 18 23 23 N 1.31514 * 120.00122 * 180.02562 * 22 20 19 24 24 Si 1.86800 * 119.99651 * 0.02562 * 22 20 19 25 25 H 1.48502 * 109.47208 * 90.00081 * 24 22 20 26 26 H 1.48506 * 109.46900 * 209.99972 * 24 22 20 27 27 H 1.48496 * 109.47195 * 329.99582 * 24 22 20 28 28 H 1.09001 * 109.47122 * 270.27963 * 1 2 3 29 29 H 1.08993 * 109.47584 * 30.28019 * 1 2 3 30 30 H 1.08996 * 109.46874 * 150.28556 * 1 2 3 31 31 H 1.07998 * 120.03278 * 0.25553 * 6 5 4 32 32 H 1.08000 * 119.96142 * 179.97438 * 7 6 5 33 33 H 1.07998 * 119.93705 * 179.97438 * 8 7 6 34 34 H 1.07999 * 119.96284 * 180.02562 * 9 8 7 35 35 H 1.08000 * 120.03400 * 179.97438 * 10 9 8 36 36 H 1.09002 * 109.46988 * 90.02670 * 12 11 4 37 37 H 1.09010 * 109.47372 * 210.02610 * 12 11 4 38 38 H 1.09002 * 109.47388 * 330.02477 * 12 11 4 39 39 H 1.09009 * 109.47023 * 209.99935 * 14 13 11 40 40 H 1.09006 * 109.47109 * 329.99481 * 14 13 11 41 41 H 1.09004 * 109.47091 * 299.99874 * 18 17 15 42 42 H 1.08992 * 109.47043 * 59.99966 * 18 17 15 43 43 H 1.08999 * 109.47310 * 300.00253 * 19 18 17 44 44 H 1.09003 * 109.46891 * 59.99793 * 19 18 17 45 45 H 0.97004 * 119.99786 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2740 1.0605 0.0000 4 7 3.6088 0.6356 -0.0032 5 6 4.7388 1.4652 -0.0066 6 6 4.7173 2.6669 -0.7018 7 6 5.8320 3.4825 -0.7028 8 6 6.9687 3.1031 -0.0129 9 6 6.9931 1.9068 0.6804 10 6 5.8816 1.0870 0.6852 11 6 3.6144 -0.7166 0.0035 12 6 4.8350 -1.6004 0.0078 13 6 2.3271 -1.1337 0.0056 14 6 1.8593 -2.5662 0.0132 15 6 1.7032 -3.0361 1.4365 16 8 1.9464 -2.2847 2.3509 17 8 1.2930 -4.2891 1.6884 18 6 1.1646 -4.6729 3.0829 19 6 0.6904 -6.1249 3.1707 20 6 0.5577 -6.5233 4.6179 21 1 0.7888 -5.8122 5.3972 22 6 0.1411 -7.7958 4.9473 23 7 0.0248 -8.1434 6.2103 24 14 -0.2581 -9.0259 3.5994 25 1 0.9669 -9.7869 3.2450 26 1 -1.3027 -9.9655 4.0803 27 1 -0.7559 -8.3034 2.4014 28 1 -0.3633 0.0050 1.0277 29 1 -0.3634 0.8874 -0.5181 30 1 -0.3633 -0.8925 -0.5094 31 1 3.8283 2.9657 -1.2373 32 1 5.8160 4.4171 -1.2437 33 1 7.8393 3.7422 -0.0155 34 1 7.8822 1.6134 1.2186 35 1 5.9013 0.1527 1.2265 36 1 5.1291 -1.8088 1.0365 37 1 4.6075 -2.5368 -0.5019 38 1 5.6514 -1.0951 -0.5082 39 1 0.9005 -2.6380 -0.5004 40 1 2.5926 -3.1906 -0.4973 41 1 2.1315 -4.5763 3.5769 42 1 0.4396 -4.0233 3.5732 43 1 -0.2764 -6.2219 2.6766 44 1 1.4157 -6.7742 2.6804 45 1 -0.2680 -9.0387 6.4419 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000804872693.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:29:19 Heat of formation + Delta-G solvation = -13.897448 kcal Electronic energy + Delta-G solvation = -26758.311993 eV Core-core repulsion = 22934.449062 eV Total energy + Delta-G solvation = -3823.862932 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.87768 -41.27207 -39.99558 -37.68934 -35.42525 -35.36754 -34.32568 -32.81161 -32.07874 -31.72415 -30.41861 -28.31161 -27.74256 -26.67678 -23.85299 -23.55261 -22.76595 -22.14377 -20.80729 -20.40213 -19.22132 -18.68343 -18.34264 -17.57095 -17.36107 -17.11354 -16.65667 -16.25369 -15.66901 -15.57080 -15.39943 -14.86880 -14.80280 -14.74734 -14.50881 -14.27457 -14.22265 -14.08932 -13.85662 -13.37147 -13.30376 -13.26353 -13.08161 -13.02517 -12.77240 -12.48293 -12.42753 -12.38767 -12.13541 -11.79176 -11.60523 -11.53996 -11.41643 -11.39380 -10.85015 -10.79772 -10.06839 -9.86612 -9.13101 -8.33128 -6.41499 -0.16635 0.27452 0.93021 1.29139 1.31134 1.39817 1.40215 1.42190 1.54988 2.08522 2.36160 2.67029 3.01766 3.40331 3.53885 3.79206 3.81952 3.85942 4.00427 4.07081 4.15912 4.19490 4.21854 4.25290 4.37733 4.38352 4.45117 4.49363 4.60666 4.61026 4.66327 4.74601 4.86888 4.91376 4.96611 4.99258 5.05878 5.10339 5.30343 5.32005 5.32751 5.44770 5.52438 5.58664 5.67112 5.76424 6.16831 6.17590 6.57658 6.64694 6.84883 7.23564 8.83017 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.021929 B = 0.002239 C = 0.002132 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1276.539669 B =12500.408719 C =13131.937041 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.089 3.911 3 N -0.328 5.328 4 N -0.332 5.332 5 C 0.124 3.876 6 C -0.129 4.129 7 C -0.100 4.100 8 C -0.118 4.118 9 C -0.097 4.097 10 C -0.143 4.143 11 C 0.102 3.898 12 C -0.100 4.100 13 C -0.239 4.239 14 C -0.022 4.022 15 C 0.454 3.546 16 O -0.544 6.544 17 O -0.359 6.359 18 C 0.095 3.905 19 C -0.003 4.003 20 C -0.543 4.543 21 H 0.031 0.969 22 C 0.009 3.991 23 N -0.946 5.946 24 Si 0.957 3.043 25 H -0.262 1.262 26 H -0.282 1.282 27 H -0.241 1.241 28 H 0.071 0.929 29 H 0.085 0.915 30 H 0.104 0.896 31 H 0.121 0.879 32 H 0.156 0.844 33 H 0.161 0.839 34 H 0.159 0.841 35 H 0.132 0.868 36 H 0.083 0.917 37 H 0.109 0.891 38 H 0.090 0.910 39 H 0.141 0.859 40 H 0.141 0.859 41 H 0.053 0.947 42 H 0.051 0.949 43 H 0.037 0.963 44 H 0.037 0.963 45 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.267 20.382 -22.182 32.917 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.077 4.077 3 N -0.148 5.148 4 N -0.108 5.108 5 C 0.034 3.966 6 C -0.148 4.148 7 C -0.118 4.118 8 C -0.136 4.136 9 C -0.115 4.115 10 C -0.164 4.164 11 C -0.023 4.023 12 C -0.158 4.158 13 C -0.250 4.250 14 C -0.060 4.060 15 C 0.299 3.701 16 O -0.434 6.434 17 O -0.275 6.275 18 C 0.021 3.979 19 C -0.040 4.040 20 C -0.581 4.581 21 H 0.050 0.950 22 C -0.189 4.189 23 N -0.585 5.585 24 Si 0.779 3.221 25 H -0.187 1.187 26 H -0.208 1.208 27 H -0.164 1.164 28 H 0.090 0.910 29 H 0.104 0.896 30 H 0.122 0.878 31 H 0.139 0.861 32 H 0.174 0.826 33 H 0.179 0.821 34 H 0.177 0.823 35 H 0.150 0.850 36 H 0.102 0.898 37 H 0.128 0.872 38 H 0.108 0.892 39 H 0.159 0.841 40 H 0.159 0.841 41 H 0.071 0.929 42 H 0.070 0.930 43 H 0.055 0.945 44 H 0.055 0.945 45 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 13.380 21.777 -21.768 33.572 hybrid contribution -0.525 -1.241 0.772 1.553 sum 12.855 20.536 -20.995 32.059 Atomic orbital electron populations 1.20368 0.84628 1.05126 1.03401 1.22817 0.98277 0.90048 0.96585 1.77354 0.86193 1.23349 1.27904 1.45738 1.04272 1.03977 1.56791 1.17873 0.84867 0.92983 1.00904 1.21108 1.00309 0.93810 0.99620 1.21412 0.91802 0.99796 0.98797 1.21685 0.99079 0.96681 0.96131 1.21408 0.97807 0.93824 0.98467 1.21320 0.92983 1.02354 0.99700 1.21464 0.98145 0.84020 0.98663 1.20816 0.92226 0.98653 1.04110 1.19302 0.91525 0.95292 1.18832 1.19670 1.07149 0.90988 0.88187 1.24605 0.72269 0.79197 0.94047 1.90648 1.47757 1.56127 1.48872 1.86472 1.77920 1.31689 1.31453 1.22863 1.00308 0.97188 0.77512 1.19457 0.97842 0.91097 0.95620 1.21134 1.46644 0.98684 0.91630 0.95028 1.26009 0.94150 1.00424 0.98315 1.70055 1.48190 1.21015 1.19267 0.85567 0.78868 0.78162 0.79547 1.18674 1.20776 1.16420 0.90985 0.89600 0.87790 0.86076 0.82614 0.82131 0.82324 0.85024 0.89827 0.87213 0.89158 0.84086 0.84099 0.92883 0.93031 0.94472 0.94496 0.92100 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.56 10.26 71.24 0.73 -0.83 16 2 C 0.09 2.42 7.22 43.11 0.31 2.73 16 3 N -0.33 -9.93 12.34 -47.33 -0.58 -10.52 16 4 N -0.33 -9.09 3.73 -176.00 -0.66 -9.74 16 5 C 0.12 2.86 6.28 38.09 0.24 3.10 16 6 C -0.13 -2.54 9.77 22.39 0.22 -2.32 16 7 C -0.10 -1.29 10.04 22.25 0.22 -1.07 16 8 C -0.12 -1.22 10.04 22.29 0.22 -0.99 16 9 C -0.10 -1.20 10.04 22.25 0.22 -0.97 16 10 C -0.14 -2.62 8.28 22.38 0.19 -2.44 16 11 C 0.10 2.52 6.76 41.36 0.28 2.80 16 12 C -0.10 -1.69 8.38 71.23 0.60 -1.09 16 13 C -0.24 -6.05 4.60 -20.13 -0.09 -6.14 16 14 C -0.02 -0.46 5.89 29.10 0.17 -0.29 16 15 C 0.45 14.44 7.95 71.23 0.57 15.01 16 16 O -0.54 -21.68 15.78 21.95 0.35 -21.33 16 17 O -0.36 -12.70 10.22 -51.41 -0.53 -13.23 16 18 C 0.09 4.07 5.40 71.98 0.39 4.46 16 19 C 0.00 -0.13 4.42 29.85 0.13 0.00 16 20 C -0.54 -31.53 9.66 25.60 0.25 -31.28 16 21 H 0.03 2.03 7.99 -2.91 -0.02 2.01 16 22 C 0.01 0.51 5.47 84.66 0.46 0.97 16 23 N -0.95 -58.94 13.96 21.45 0.30 -58.64 16 24 Si 0.96 43.01 27.47 68.60 1.88 44.89 16 25 H -0.26 -11.19 7.11 99.48 0.71 -10.49 16 26 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 27 H -0.24 -9.94 6.54 99.48 0.65 -9.29 16 28 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 29 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 30 H 0.10 1.55 7.25 -2.39 -0.02 1.53 16 31 H 0.12 2.55 8.06 -2.91 -0.02 2.52 16 32 H 0.16 1.14 8.06 -2.91 -0.02 1.12 16 33 H 0.16 0.63 8.06 -2.91 -0.02 0.60 16 34 H 0.16 1.08 8.06 -2.91 -0.02 1.05 16 35 H 0.13 2.35 6.09 -2.91 -0.02 2.33 16 36 H 0.08 1.48 7.74 -2.39 -0.02 1.47 16 37 H 0.11 1.36 7.15 -2.38 -0.02 1.35 16 38 H 0.09 1.25 6.89 -2.39 -0.02 1.23 16 39 H 0.14 2.16 7.26 -2.38 -0.02 2.14 16 40 H 0.14 2.05 7.15 -2.38 -0.02 2.03 16 41 H 0.05 2.34 8.13 -2.38 -0.02 2.33 16 42 H 0.05 2.30 8.13 -2.39 -0.02 2.28 16 43 H 0.04 1.69 7.20 -2.39 -0.02 1.67 16 44 H 0.04 1.65 7.57 -2.39 -0.02 1.63 16 45 H 0.27 15.56 8.31 -92.71 -0.77 14.79 16 Total: -1.00 -80.07 380.10 6.82 -73.26 By element: Atomic # 1 Polarization: 12.71 SS G_CDS: 0.94 Total: 13.66 kcal Atomic # 6 Polarization: -23.46 SS G_CDS: 5.11 Total: -18.35 kcal Atomic # 7 Polarization: -77.96 SS G_CDS: -0.94 Total: -78.90 kcal Atomic # 8 Polarization: -34.38 SS G_CDS: -0.18 Total: -34.56 kcal Atomic # 14 Polarization: 43.01 SS G_CDS: 1.88 Total: 44.89 kcal Total: -80.07 6.82 -73.26 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000804872693.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.360 kcal (2) G-P(sol) polarization free energy of solvation -80.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.815 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.257 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.897 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds