Wall clock time and date at job start Tue Mar 31 2020 15:59:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30120 * 125.46188 * 2 1 4 4 C 1.35202 * 108.65993 * 180.02562 * 3 2 1 5 5 C 1.48375 * 126.32564 * 180.02562 * 4 3 2 6 6 C 1.39383 * 120.05052 * 179.69395 * 5 4 3 7 7 C 1.37890 * 119.94982 * 179.74116 * 6 5 4 8 8 C 1.38956 * 120.05182 * 0.51054 * 7 6 5 9 9 N 1.39907 * 119.94932 * 179.74384 * 8 7 6 10 10 C 1.34777 * 119.99666 * 213.43255 * 9 8 7 11 11 O 1.21288 * 120.00239 * 5.27733 * 10 9 8 12 12 C 1.50698 * 120.00043 * 185.27903 * 10 9 8 13 13 C 1.52997 * 109.47539 * 180.02562 * 12 10 9 14 14 C 1.53001 * 109.47245 * 179.97438 * 13 12 10 15 15 C 1.53007 * 109.46868 * 179.97438 * 14 13 12 16 16 C 1.50695 * 109.46781 * 180.02562 * 15 14 13 17 17 H 1.08006 * 120.00361 * 0.02562 * 16 15 14 18 18 C 1.37883 * 119.99785 * 180.02562 * 16 15 14 19 19 N 1.31516 * 120.00011 * 180.02562 * 18 16 15 20 20 Si 1.86802 * 120.00030 * 0.02562 * 18 16 15 21 21 H 1.48495 * 109.47166 * 89.99953 * 20 18 16 22 22 H 1.48498 * 109.46658 * 210.00025 * 20 18 16 23 23 H 1.48498 * 109.46941 * 329.99773 * 20 18 16 24 24 C 1.38958 * 120.10313 * 359.76591 * 8 7 6 25 25 C 1.37894 * 120.04741 * 359.97438 * 24 8 7 26 26 C 1.35540 * 107.34441 * 359.97438 * 4 3 2 27 27 O 1.33981 * 125.46302 * 180.26543 * 2 1 3 28 28 H 1.08994 * 109.46866 * 90.00446 * 1 2 3 29 29 H 1.09005 * 109.46858 * 210.00159 * 1 2 3 30 30 H 1.08993 * 109.46810 * 330.00162 * 1 2 3 31 31 H 1.08002 * 120.02449 * 359.97438 * 6 5 4 32 32 H 1.08002 * 119.97862 * 180.25416 * 7 6 5 33 33 H 0.96990 * 120.00127 * 33.43989 * 9 8 7 34 34 H 1.09009 * 109.47068 * 300.00425 * 12 10 9 35 35 H 1.08998 * 109.47141 * 59.99928 * 12 10 9 36 36 H 1.08996 * 109.47296 * 299.99982 * 13 12 10 37 37 H 1.08998 * 109.47194 * 59.99677 * 13 12 10 38 38 H 1.08992 * 109.47512 * 299.99917 * 14 13 12 39 39 H 1.09002 * 109.47063 * 60.00688 * 14 13 12 40 40 H 1.08992 * 109.47308 * 300.00435 * 15 14 13 41 41 H 1.09007 * 109.46876 * 60.00661 * 15 14 13 42 42 H 0.96996 * 119.99985 * 180.02562 * 19 18 16 43 43 H 1.07992 * 119.97850 * 179.97438 * 24 8 7 44 44 H 1.07998 * 120.02878 * 180.02562 * 25 24 8 45 45 H 1.08002 * 126.51946 * 179.97438 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2619 1.0598 0.0000 4 6 3.5562 0.6690 -0.0006 5 6 4.7432 1.5593 -0.0002 6 6 6.0254 1.0130 0.0055 7 6 7.1271 1.8423 0.0004 8 6 6.9597 3.2217 0.0003 9 7 8.0789 4.0611 0.0005 10 6 8.0334 5.2448 0.6435 11 8 7.0582 5.5405 1.3013 12 6 9.1940 6.2009 0.5451 13 6 8.8894 7.4586 1.3613 14 6 10.0681 8.4290 1.2619 15 6 9.7631 9.6871 2.0776 16 6 10.9238 10.6431 1.9792 17 1 11.7920 10.3800 1.3931 18 6 10.8775 11.8538 2.6374 19 7 11.8902 12.6884 2.5511 20 14 9.3762 12.3086 3.6518 21 1 9.5613 11.8384 5.0481 22 1 9.2025 13.7833 3.6449 23 1 8.1714 11.6655 3.0684 24 6 5.6823 3.7688 0.0003 25 6 4.5777 2.9433 0.0000 26 6 3.5690 -0.6863 -0.0004 27 8 2.2843 -1.0913 -0.0051 28 1 -0.3633 -0.0001 -1.0276 29 1 -0.3633 -0.8900 0.5139 30 1 -0.3633 0.8900 0.5138 31 1 6.1561 -0.0591 0.0102 32 1 8.1209 1.4194 0.0007 33 1 8.8876 3.7913 -0.4621 34 1 10.0925 5.7232 0.9361 35 1 9.3524 6.4739 -0.4982 36 1 7.9910 7.9365 0.9708 37 1 8.7313 7.1853 2.4045 38 1 10.9663 7.9510 1.6527 39 1 10.2266 8.7025 0.2187 40 1 8.8651 10.1649 1.6865 41 1 9.6044 9.4139 3.1209 42 1 11.8577 13.5399 3.0145 43 1 5.5545 4.8411 0.0006 44 1 3.5850 3.3688 -0.0004 45 1 4.4430 -1.3208 -0.0011 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000805165209.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:59:22 Heat of formation + Delta-G solvation = -9.030798 kcal Electronic energy + Delta-G solvation = -25357.344075 eV Core-core repulsion = 21533.692177 eV Total energy + Delta-G solvation = -3823.651898 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -43.68150 -40.71164 -38.81669 -35.76864 -35.07256 -34.67048 -32.85822 -32.54887 -31.30539 -30.61120 -29.59879 -27.61679 -26.04376 -24.05371 -23.25409 -22.25532 -21.64624 -21.10084 -20.19112 -20.04635 -18.18385 -17.68186 -17.15216 -17.02857 -16.54796 -16.33011 -15.95538 -15.09950 -14.62550 -14.57361 -14.26300 -14.18166 -14.06016 -13.85266 -13.64157 -13.58664 -13.31488 -12.98323 -12.67217 -12.52662 -12.31699 -12.11080 -11.87280 -11.77466 -11.50294 -11.14428 -10.94464 -10.77245 -10.59788 -10.55489 -10.05716 -9.84433 -9.66548 -9.47689 -9.40788 -9.20326 -9.12952 -8.49706 -8.06999 -6.00970 -3.98571 0.49848 1.13422 1.24522 2.26388 2.30415 2.62233 2.84600 3.35260 3.42393 3.46816 3.48227 3.64069 4.24745 4.40439 4.49817 4.52574 4.61932 4.69601 4.84579 4.88182 5.03760 5.06860 5.12071 5.20756 5.24558 5.31659 5.33924 5.40243 5.43866 5.64672 5.69152 5.76195 5.97910 6.03240 6.04713 6.10954 6.22872 6.29262 6.37436 6.64624 6.72835 6.78743 6.96872 7.15899 7.31387 7.36737 7.49558 7.84130 7.98086 8.57587 9.03858 9.62396 11.12490 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.025376 B = 0.001633 C = 0.001548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1103.146223 B =17140.464022 C =18081.053952 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 C 0.194 3.806 3 N -0.476 5.476 4 C 0.038 3.962 5 C -0.040 4.040 6 C -0.086 4.086 7 C -0.148 4.148 8 C 0.162 3.838 9 N -0.681 5.681 10 C 0.512 3.488 11 O -0.513 6.513 12 C -0.138 4.138 13 C -0.107 4.107 14 C -0.103 4.103 15 C -0.016 4.016 16 C -0.520 4.520 17 H 0.071 0.929 18 C 0.065 3.935 19 N -0.906 5.906 20 Si 0.879 3.121 21 H -0.277 1.277 22 H -0.288 1.288 23 H -0.264 1.264 24 C -0.123 4.123 25 C -0.066 4.066 26 C -0.071 4.071 27 O -0.202 6.202 28 H 0.094 0.906 29 H 0.089 0.911 30 H 0.102 0.898 31 H 0.126 0.874 32 H 0.130 0.870 33 H 0.412 0.588 34 H 0.096 0.904 35 H 0.097 0.903 36 H 0.065 0.935 37 H 0.065 0.935 38 H 0.053 0.947 39 H 0.054 0.946 40 H 0.016 0.984 41 H 0.011 0.989 42 H 0.262 0.738 43 H 0.140 0.860 44 H 0.134 0.866 45 H 0.218 0.782 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.808 -32.676 -8.980 38.282 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.014 4.014 3 N -0.206 5.206 4 C -0.080 4.080 5 C -0.042 4.042 6 C -0.105 4.105 7 C -0.169 4.169 8 C 0.067 3.933 9 N -0.327 5.327 10 C 0.301 3.699 11 O -0.387 6.387 12 C -0.177 4.177 13 C -0.145 4.145 14 C -0.140 4.140 15 C -0.053 4.053 16 C -0.558 4.558 17 H 0.089 0.911 18 C -0.136 4.136 19 N -0.545 5.545 20 Si 0.707 3.293 21 H -0.203 1.203 22 H -0.214 1.214 23 H -0.189 1.189 24 C -0.143 4.143 25 C -0.085 4.085 26 C -0.141 4.141 27 O -0.089 6.089 28 H 0.112 0.888 29 H 0.108 0.892 30 H 0.121 0.879 31 H 0.144 0.856 32 H 0.148 0.852 33 H 0.248 0.752 34 H 0.114 0.886 35 H 0.115 0.885 36 H 0.083 0.917 37 H 0.083 0.917 38 H 0.072 0.928 39 H 0.072 0.928 40 H 0.034 0.966 41 H 0.030 0.970 42 H 0.072 0.928 43 H 0.157 0.843 44 H 0.152 0.848 45 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges -18.676 -31.621 -8.440 37.682 hybrid contribution 0.208 -0.525 0.350 0.664 sum -18.468 -32.146 -8.089 37.945 Atomic orbital electron populations 1.20291 0.81149 1.05301 1.04828 1.26323 0.96616 0.78504 0.99915 1.70479 1.01348 1.30037 1.18691 1.20186 0.91209 0.91305 1.05338 1.17681 0.89368 0.92134 1.04986 1.20765 0.90704 0.99401 0.99613 1.20742 0.99292 0.91364 1.05469 1.17909 0.87378 0.89657 0.98370 1.43790 1.15216 1.19289 1.54414 1.21351 0.89802 0.81257 0.77534 1.90733 1.34429 1.74950 1.38543 1.21811 0.95940 0.96161 1.03825 1.21509 1.00132 0.93204 0.99698 1.21478 0.95802 0.96030 1.00712 1.19577 0.97429 0.93297 0.94995 1.21183 1.02846 1.00772 1.31038 0.91097 1.25040 0.95989 0.96295 0.96232 1.69919 1.30975 1.09667 1.43922 0.86778 0.84240 0.77369 0.80940 1.20318 1.21435 1.18905 1.21178 0.90517 1.01378 1.01193 1.21108 0.99178 0.91833 0.96347 1.24958 0.84822 0.95813 1.08513 1.84423 1.16851 1.37670 1.69933 0.88799 0.89242 0.87942 0.85625 0.85173 0.75205 0.88597 0.88463 0.91653 0.91668 0.92794 0.92761 0.96596 0.97044 0.92808 0.84260 0.84831 0.76606 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.22 10.51 36.00 0.38 0.16 16 2 C 0.19 1.63 8.32 -13.00 -0.11 1.53 16 3 N -0.48 -5.25 10.99 -7.67 -0.08 -5.34 16 4 C 0.04 0.39 6.87 -83.17 -0.57 -0.18 16 5 C -0.04 -0.42 5.88 -104.87 -0.62 -1.03 16 6 C -0.09 -0.70 9.56 -39.28 -0.38 -1.07 16 7 C -0.15 -1.24 9.95 -39.44 -0.39 -1.63 16 8 C 0.16 1.73 6.28 -83.64 -0.53 1.20 16 9 N -0.68 -6.49 5.34 -9.83 -0.05 -6.55 16 10 C 0.51 6.47 7.56 -10.99 -0.08 6.39 16 11 O -0.51 -8.57 13.67 5.55 0.08 -8.49 16 12 C -0.14 -1.60 5.70 -27.89 -0.16 -1.76 16 13 C -0.11 -1.74 4.50 -26.73 -0.12 -1.86 16 14 C -0.10 -1.97 5.15 -26.73 -0.14 -2.11 16 15 C -0.02 -0.38 4.04 -27.88 -0.11 -0.49 16 16 C -0.52 -15.09 9.66 -34.44 -0.33 -15.42 16 17 H 0.07 2.18 7.99 -52.48 -0.42 1.76 16 18 C 0.07 1.94 5.47 -17.82 -0.10 1.84 16 19 N -0.91 -28.34 13.96 55.43 0.77 -27.57 16 20 Si 0.88 22.36 27.47 -169.99 -4.67 17.69 16 21 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 22 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 23 H -0.26 -6.53 6.54 56.52 0.37 -6.16 16 24 C -0.12 -1.51 8.64 -39.44 -0.34 -1.85 16 25 C -0.07 -0.77 9.69 -39.28 -0.38 -1.15 16 26 C -0.07 -0.55 11.57 29.77 0.34 -0.20 16 27 O -0.20 -1.70 10.76 5.47 0.06 -1.65 16 28 H 0.09 0.23 8.14 -51.93 -0.42 -0.20 16 29 H 0.09 0.18 8.14 -51.93 -0.42 -0.25 16 30 H 0.10 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.13 0.62 7.02 -52.49 -0.37 0.25 16 32 H 0.13 0.74 8.06 -52.49 -0.42 0.31 16 33 H 0.41 2.43 8.82 -40.82 -0.36 2.07 16 34 H 0.10 0.93 8.14 -51.92 -0.42 0.51 16 35 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 36 H 0.06 1.11 8.10 -51.93 -0.42 0.69 16 37 H 0.06 1.12 8.10 -51.93 -0.42 0.70 16 38 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 39 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 40 H 0.02 0.39 7.20 -51.93 -0.37 0.02 16 41 H 0.01 0.28 7.57 -51.93 -0.39 -0.12 16 42 H 0.26 7.68 8.31 -40.82 -0.34 7.34 16 43 H 0.14 1.92 6.41 -52.49 -0.34 1.58 16 44 H 0.13 1.57 7.86 -52.49 -0.41 1.15 16 45 H 0.22 0.79 7.29 -52.49 -0.38 0.41 16 LS Contribution 382.00 15.07 5.76 5.76 Total: -1.00 -37.23 382.00 -8.21 -45.44 By element: Atomic # 1 Polarization: 4.78 SS G_CDS: -6.44 Total: -1.66 kcal Atomic # 6 Polarization: -14.01 SS G_CDS: -3.63 Total: -17.64 kcal Atomic # 7 Polarization: -40.09 SS G_CDS: 0.64 Total: -39.45 kcal Atomic # 8 Polarization: -10.27 SS G_CDS: 0.13 Total: -10.14 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -4.67 Total: 17.69 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -37.23 -8.21 -45.44 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805165209.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.408 kcal (2) G-P(sol) polarization free energy of solvation -37.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.823 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.208 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.439 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds