Wall clock time and date at job start Tue Mar 31 2020 15:59:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30120 * 125.46188 * 2 1 4 4 C 1.35202 * 108.65993 * 180.02562 * 3 2 1 5 5 C 1.48375 * 126.32564 * 180.02562 * 4 3 2 6 6 C 1.39383 * 120.05052 * 179.69395 * 5 4 3 7 7 C 1.37890 * 119.94982 * 179.74116 * 6 5 4 8 8 C 1.38956 * 120.05182 * 0.51054 * 7 6 5 9 9 N 1.39907 * 119.94932 * 179.74384 * 8 7 6 10 10 C 1.34777 * 119.99666 * 213.43255 * 9 8 7 11 11 O 1.21288 * 120.00239 * 5.27733 * 10 9 8 12 12 C 1.50698 * 120.00043 * 185.27903 * 10 9 8 13 13 C 1.52997 * 109.47539 * 180.02562 * 12 10 9 14 14 C 1.53001 * 109.47245 * 179.97438 * 13 12 10 15 15 C 1.53007 * 109.46868 * 179.97438 * 14 13 12 16 16 C 1.50695 * 109.46781 * 180.02562 * 15 14 13 17 17 H 1.08006 * 120.00361 * 0.02562 * 16 15 14 18 18 C 1.37883 * 119.99785 * 180.02562 * 16 15 14 19 19 N 1.31516 * 120.00011 * 180.02562 * 18 16 15 20 20 Si 1.86802 * 120.00030 * 0.02562 * 18 16 15 21 21 H 1.48495 * 109.47166 * 89.99953 * 20 18 16 22 22 H 1.48498 * 109.46658 * 210.00025 * 20 18 16 23 23 H 1.48498 * 109.46941 * 329.99773 * 20 18 16 24 24 C 1.38958 * 120.10313 * 359.76591 * 8 7 6 25 25 C 1.37894 * 120.04741 * 359.97438 * 24 8 7 26 26 C 1.35540 * 107.34441 * 359.97438 * 4 3 2 27 27 O 1.33981 * 125.46302 * 180.26543 * 2 1 3 28 28 H 1.08994 * 109.46866 * 90.00446 * 1 2 3 29 29 H 1.09005 * 109.46858 * 210.00159 * 1 2 3 30 30 H 1.08993 * 109.46810 * 330.00162 * 1 2 3 31 31 H 1.08002 * 120.02449 * 359.97438 * 6 5 4 32 32 H 1.08002 * 119.97862 * 180.25416 * 7 6 5 33 33 H 0.96990 * 120.00127 * 33.43989 * 9 8 7 34 34 H 1.09009 * 109.47068 * 300.00425 * 12 10 9 35 35 H 1.08998 * 109.47141 * 59.99928 * 12 10 9 36 36 H 1.08996 * 109.47296 * 299.99982 * 13 12 10 37 37 H 1.08998 * 109.47194 * 59.99677 * 13 12 10 38 38 H 1.08992 * 109.47512 * 299.99917 * 14 13 12 39 39 H 1.09002 * 109.47063 * 60.00688 * 14 13 12 40 40 H 1.08992 * 109.47308 * 300.00435 * 15 14 13 41 41 H 1.09007 * 109.46876 * 60.00661 * 15 14 13 42 42 H 0.96996 * 119.99985 * 180.02562 * 19 18 16 43 43 H 1.07992 * 119.97850 * 179.97438 * 24 8 7 44 44 H 1.07998 * 120.02878 * 180.02562 * 25 24 8 45 45 H 1.08002 * 126.51946 * 179.97438 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2619 1.0598 0.0000 4 6 3.5562 0.6690 -0.0006 5 6 4.7432 1.5593 -0.0002 6 6 6.0254 1.0130 0.0055 7 6 7.1271 1.8423 0.0004 8 6 6.9597 3.2217 0.0003 9 7 8.0789 4.0611 0.0005 10 6 8.0334 5.2448 0.6435 11 8 7.0582 5.5405 1.3013 12 6 9.1940 6.2009 0.5451 13 6 8.8894 7.4586 1.3613 14 6 10.0681 8.4290 1.2619 15 6 9.7631 9.6871 2.0776 16 6 10.9238 10.6431 1.9792 17 1 11.7920 10.3800 1.3931 18 6 10.8775 11.8538 2.6374 19 7 11.8902 12.6884 2.5511 20 14 9.3762 12.3086 3.6518 21 1 9.5613 11.8384 5.0481 22 1 9.2025 13.7833 3.6449 23 1 8.1714 11.6655 3.0684 24 6 5.6823 3.7688 0.0003 25 6 4.5777 2.9433 0.0000 26 6 3.5690 -0.6863 -0.0004 27 8 2.2843 -1.0913 -0.0051 28 1 -0.3633 -0.0001 -1.0276 29 1 -0.3633 -0.8900 0.5139 30 1 -0.3633 0.8900 0.5138 31 1 6.1561 -0.0591 0.0102 32 1 8.1209 1.4194 0.0007 33 1 8.8876 3.7913 -0.4621 34 1 10.0925 5.7232 0.9361 35 1 9.3524 6.4739 -0.4982 36 1 7.9910 7.9365 0.9708 37 1 8.7313 7.1853 2.4045 38 1 10.9663 7.9510 1.6527 39 1 10.2266 8.7025 0.2187 40 1 8.8651 10.1649 1.6865 41 1 9.6044 9.4139 3.1209 42 1 11.8577 13.5399 3.0145 43 1 5.5545 4.8411 0.0006 44 1 3.5850 3.3688 -0.0004 45 1 4.4430 -1.3208 -0.0011 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000805165209.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:59:21 Heat of formation + Delta-G solvation = -35.142436 kcal Electronic energy + Delta-G solvation = -25358.476361 eV Core-core repulsion = 21533.692177 eV Total energy + Delta-G solvation = -3824.784183 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -44.29371 -41.59473 -39.66170 -36.82177 -36.35047 -35.44843 -34.62368 -33.36890 -32.06638 -31.99957 -30.53264 -28.33338 -27.49641 -25.03049 -23.99425 -23.59936 -22.30838 -22.03739 -21.63998 -21.08578 -18.94496 -18.82167 -18.38991 -17.88583 -17.76420 -17.09306 -16.85946 -16.35179 -16.03231 -15.53175 -15.36476 -15.12933 -14.83277 -14.72674 -14.61587 -14.36485 -14.19058 -13.90653 -13.81409 -13.69255 -13.53648 -13.29383 -13.01527 -12.87308 -12.63434 -12.35593 -12.22691 -12.07857 -11.76573 -11.61761 -11.52232 -11.41522 -11.32342 -11.26607 -10.85154 -10.76399 -10.06456 -9.97670 -8.80023 -8.30247 -6.33079 -0.20973 0.39277 0.61226 1.33803 1.35463 1.44398 1.48021 1.79602 1.82423 2.03531 2.35100 2.88947 2.94865 3.05326 3.59417 3.67088 3.89381 3.96456 3.98378 4.02468 4.14708 4.34926 4.44680 4.51627 4.54978 4.63068 4.64509 4.65405 4.71873 4.76515 4.80001 4.85132 4.88877 5.02821 5.13402 5.15920 5.19376 5.27158 5.29097 5.36166 5.47074 5.53184 5.60554 5.65659 5.68504 5.95790 6.29120 6.41104 6.70570 6.75024 7.12670 7.31854 8.86273 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.025376 B = 0.001633 C = 0.001548 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1103.146223 B =17140.464022 C =18081.053952 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 C 0.190 3.810 3 N -0.519 5.519 4 C -0.001 4.001 5 C -0.045 4.045 6 C -0.079 4.079 7 C -0.134 4.134 8 C 0.143 3.857 9 N -0.662 5.662 10 C 0.512 3.488 11 O -0.563 6.563 12 C -0.128 4.128 13 C -0.100 4.100 14 C -0.094 4.094 15 C -0.018 4.018 16 C -0.531 4.531 17 H 0.039 0.961 18 C 0.005 3.995 19 N -0.950 5.950 20 Si 0.946 3.054 21 H -0.267 1.267 22 H -0.282 1.282 23 H -0.254 1.254 24 C -0.143 4.143 25 C -0.088 4.088 26 C -0.051 4.051 27 O -0.206 6.206 28 H 0.109 0.891 29 H 0.111 0.889 30 H 0.103 0.897 31 H 0.168 0.832 32 H 0.168 0.832 33 H 0.432 0.568 34 H 0.125 0.875 35 H 0.122 0.878 36 H 0.050 0.950 37 H 0.052 0.948 38 H 0.060 0.940 39 H 0.058 0.942 40 H 0.012 0.988 41 H 0.012 0.988 42 H 0.266 0.734 43 H 0.112 0.888 44 H 0.115 0.885 45 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.008 -36.269 -9.225 41.531 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.017 4.017 3 N -0.249 5.249 4 C -0.118 4.118 5 C -0.046 4.046 6 C -0.097 4.097 7 C -0.154 4.154 8 C 0.048 3.952 9 N -0.309 5.309 10 C 0.302 3.698 11 O -0.440 6.440 12 C -0.167 4.167 13 C -0.138 4.138 14 C -0.131 4.131 15 C -0.055 4.055 16 C -0.569 4.569 17 H 0.057 0.943 18 C -0.191 4.191 19 N -0.591 5.591 20 Si 0.769 3.231 21 H -0.192 1.192 22 H -0.207 1.207 23 H -0.177 1.177 24 C -0.163 4.163 25 C -0.107 4.107 26 C -0.121 4.121 27 O -0.093 6.093 28 H 0.128 0.872 29 H 0.129 0.871 30 H 0.122 0.878 31 H 0.185 0.815 32 H 0.186 0.814 33 H 0.272 0.728 34 H 0.143 0.857 35 H 0.140 0.860 36 H 0.069 0.931 37 H 0.071 0.929 38 H 0.078 0.922 39 H 0.077 0.923 40 H 0.031 0.969 41 H 0.030 0.970 42 H 0.075 0.925 43 H 0.131 0.869 44 H 0.134 0.866 45 H 0.275 0.725 Dipole moment (debyes) X Y Z Total from point charges -18.852 -35.251 -8.720 40.916 hybrid contribution 0.275 0.516 0.368 0.691 sum -18.577 -34.735 -8.352 40.266 Atomic orbital electron populations 1.20529 0.78434 1.06405 1.06149 1.27144 0.98007 0.77977 0.98593 1.70452 1.02425 1.31699 1.20352 1.20401 0.91006 0.92589 1.07827 1.17911 0.90872 0.91423 1.04410 1.21225 0.89311 1.01497 0.97716 1.21142 1.01149 0.89980 1.03127 1.18065 0.86754 0.90948 0.99406 1.43529 1.15706 1.18142 1.53517 1.21480 0.89224 0.82043 0.77096 1.90730 1.36219 1.76088 1.40989 1.21706 0.96435 0.93987 1.04567 1.21302 0.98023 0.94553 0.99896 1.21337 0.97296 0.94540 0.99953 1.19585 0.95300 0.94645 0.96019 1.21559 1.03293 1.01884 1.30150 0.94315 1.25966 0.99178 0.96330 0.97662 1.70056 1.33267 1.10369 1.45376 0.85722 0.80489 0.77377 0.79469 1.19238 1.20720 1.17749 1.21038 0.92021 1.00205 1.03064 1.21018 0.98313 0.93066 0.98303 1.25688 0.85557 0.95261 1.05609 1.84455 1.17256 1.37708 1.69870 0.87241 0.87052 0.87847 0.81488 0.81447 0.72824 0.85723 0.85969 0.93088 0.92901 0.92162 0.92322 0.96925 0.96952 0.92527 0.86947 0.86644 0.72510 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.37 10.51 71.24 0.75 0.37 16 2 C 0.19 3.07 8.32 88.36 0.74 3.81 16 3 N -0.52 -11.71 10.99 -293.02 -3.22 -14.93 16 4 C 0.00 -0.02 6.87 40.70 0.28 0.26 16 5 C -0.04 -0.91 5.88 -20.02 -0.12 -1.03 16 6 C -0.08 -1.04 9.56 22.46 0.21 -0.82 16 7 C -0.13 -1.80 9.95 22.36 0.22 -1.57 16 8 C 0.14 2.89 6.28 38.20 0.24 3.13 16 9 N -0.66 -11.33 5.34 -303.39 -1.62 -12.95 16 10 C 0.51 12.45 7.56 87.66 0.66 13.12 16 11 O -0.56 -19.31 13.67 -3.05 -0.04 -19.35 16 12 C -0.13 -2.69 5.70 29.85 0.17 -2.51 16 13 C -0.10 -3.14 4.50 30.59 0.14 -3.00 16 14 C -0.09 -3.52 5.15 30.60 0.16 -3.36 16 15 C -0.02 -0.88 4.04 29.85 0.12 -0.76 16 16 C -0.53 -31.27 9.66 25.60 0.25 -31.03 16 17 H 0.04 2.45 7.99 -2.91 -0.02 2.43 16 18 C 0.01 0.32 5.47 84.66 0.46 0.79 16 19 N -0.95 -60.55 13.96 21.45 0.30 -60.25 16 20 Si 0.95 46.23 27.47 68.60 1.88 48.12 16 21 H -0.27 -12.57 7.11 99.48 0.71 -11.87 16 22 H -0.28 -13.37 7.11 99.48 0.71 -12.66 16 23 H -0.25 -11.85 6.54 99.48 0.65 -11.20 16 24 C -0.14 -3.74 8.64 22.36 0.19 -3.54 16 25 C -0.09 -2.22 9.69 22.47 0.22 -2.00 16 26 C -0.05 -0.66 11.57 67.20 0.78 0.12 16 27 O -0.21 -3.09 10.76 -3.36 -0.04 -3.13 16 28 H 0.11 0.37 8.14 -2.39 -0.02 0.35 16 29 H 0.11 0.21 8.14 -2.38 -0.02 0.19 16 30 H 0.10 0.65 8.14 -2.39 -0.02 0.63 16 31 H 0.17 0.74 7.02 -2.91 -0.02 0.72 16 32 H 0.17 0.98 8.06 -2.91 -0.02 0.96 16 33 H 0.43 3.62 8.82 -92.72 -0.82 2.80 16 34 H 0.12 1.96 8.14 -2.38 -0.02 1.94 16 35 H 0.12 2.01 8.14 -2.39 -0.02 1.99 16 36 H 0.05 1.74 8.10 -2.39 -0.02 1.72 16 37 H 0.05 1.79 8.10 -2.39 -0.02 1.77 16 38 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 39 H 0.06 2.14 8.14 -2.39 -0.02 2.12 16 40 H 0.01 0.61 7.20 -2.39 -0.02 0.59 16 41 H 0.01 0.59 7.57 -2.38 -0.02 0.57 16 42 H 0.27 15.81 8.31 -92.71 -0.77 15.04 16 43 H 0.11 3.46 6.41 -2.91 -0.02 3.44 16 44 H 0.12 3.14 7.86 -2.91 -0.02 3.12 16 45 H 0.26 0.68 7.29 -2.91 -0.02 0.66 16 Total: -1.00 -85.93 382.00 2.87 -83.05 By element: Atomic # 1 Polarization: 7.33 SS G_CDS: 0.14 Total: 7.46 kcal Atomic # 6 Polarization: -33.49 SS G_CDS: 5.47 Total: -28.02 kcal Atomic # 7 Polarization: -83.59 SS G_CDS: -4.54 Total: -88.13 kcal Atomic # 8 Polarization: -22.40 SS G_CDS: -0.08 Total: -22.48 kcal Atomic # 14 Polarization: 46.23 SS G_CDS: 1.88 Total: 48.12 kcal Total: -85.93 2.87 -83.05 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805165209.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.911 kcal (2) G-P(sol) polarization free energy of solvation -85.927 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.874 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.053 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.142 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds