Wall clock time and date at job start Tue Mar 31 2020 15:45:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.31364 * 119.64333 * 2 1 4 4 C 1.33717 * 119.70762 * 179.97438 * 3 2 1 5 5 C 1.40597 * 121.10774 * 180.02562 * 4 3 2 6 6 C 1.36056 * 119.71258 * 179.97438 * 5 4 3 7 7 C 1.39415 * 120.97344 * 359.97438 * 6 5 4 8 8 C 1.36060 * 120.97494 * 359.97438 * 7 6 5 9 9 C 1.40591 * 119.71267 * 0.02562 * 8 7 6 10 10 N 1.33720 * 121.10732 * 180.02562 * 9 8 7 11 11 C 1.31355 * 119.71093 * 179.97438 * 10 9 8 12 12 C 1.50695 * 119.64481 * 180.02562 * 11 10 9 13 13 O 1.45205 * 109.47079 * 270.03998 * 12 11 10 14 14 C 1.34228 * 116.99933 * 179.97438 * 13 12 11 15 15 O 1.20829 * 120.00108 * 0.02562 * 14 13 12 16 16 C 1.50698 * 119.99756 * 180.02562 * 14 13 12 17 17 C 1.53003 * 109.46953 * 180.02562 * 16 14 13 18 18 C 1.53005 * 109.47068 * 180.02562 * 17 16 14 19 19 C 1.53003 * 109.47068 * 180.02562 * 18 17 16 20 20 C 1.50698 * 109.46953 * 179.97438 * 19 18 17 21 21 H 1.08004 * 120.00144 * 359.97438 * 20 19 18 22 22 C 1.37871 * 119.99952 * 179.97438 * 20 19 18 23 23 N 1.31519 * 120.00279 * 180.02562 * 22 20 19 24 24 Si 1.86805 * 120.00161 * 359.97438 * 22 20 19 25 25 H 1.48502 * 109.47083 * 90.00025 * 24 22 20 26 26 H 1.48500 * 109.47135 * 210.00259 * 24 22 20 27 27 H 1.48504 * 109.46978 * 330.00349 * 24 22 20 28 28 H 1.09002 * 109.46633 * 90.00592 * 1 2 3 29 29 H 1.09002 * 109.47075 * 209.99938 * 1 2 3 30 30 H 1.08997 * 109.47208 * 330.00448 * 1 2 3 31 31 H 1.08004 * 120.14486 * 359.97438 * 5 4 3 32 32 H 1.08001 * 119.51389 * 180.27618 * 6 5 4 33 33 H 1.07995 * 119.51064 * 179.97438 * 7 6 5 34 34 H 1.07992 * 120.13977 * 179.97438 * 8 7 6 35 35 H 1.08998 * 109.47306 * 30.04338 * 12 11 10 36 36 H 1.09006 * 109.47252 * 150.04618 * 12 11 10 37 37 H 1.08993 * 109.47390 * 300.00115 * 16 14 13 38 38 H 1.09002 * 109.47085 * 60.00173 * 16 14 13 39 39 H 1.09002 * 109.46963 * 299.99802 * 17 16 14 40 40 H 1.08996 * 109.47031 * 59.99820 * 17 16 14 41 41 H 1.09002 * 109.46687 * 299.99506 * 18 17 16 42 42 H 1.09002 * 109.47408 * 59.99523 * 18 17 16 43 43 H 1.08993 * 109.46854 * 299.99596 * 19 18 17 44 44 H 1.08996 * 109.47031 * 59.99355 * 19 18 17 45 45 H 0.96996 * 120.00035 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1567 1.1417 0.0000 4 6 3.4939 1.1432 0.0005 5 6 4.2190 2.3478 0.0011 6 6 5.5791 2.3162 0.0021 7 6 6.2687 1.1045 0.0032 8 6 5.6011 -0.0811 0.0037 9 6 4.1952 -0.0892 0.0027 10 7 3.5110 -1.2380 0.0037 11 6 2.1977 -1.2136 0.0032 12 6 1.4280 -2.5092 0.0049 13 8 1.1822 -2.9280 -1.3636 14 6 0.5032 -4.0726 -1.5379 15 8 0.1264 -4.7036 -0.5788 16 6 0.2110 -4.5708 -2.9298 17 6 -0.5696 -5.8842 -2.8480 18 6 -0.8657 -6.3904 -4.2612 19 6 -1.6468 -7.7035 -4.1794 20 6 -1.9391 -8.2016 -5.5713 21 1 -1.6018 -7.6378 -6.4286 22 6 -2.6369 -9.3771 -5.7504 23 7 -2.8916 -9.8122 -6.9651 24 14 -3.2196 -10.3527 -4.2677 25 1 -4.5777 -9.8961 -3.8774 26 1 -3.2624 -11.7968 -4.6111 27 1 -2.2818 -10.1405 -3.1360 28 1 -0.3633 -0.0001 -1.0277 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3633 0.8900 0.5137 31 1 3.6984 3.2942 0.0007 32 1 6.1329 3.2435 0.0071 33 1 7.3486 1.1070 0.0036 34 1 6.1488 -1.0118 0.0042 35 1 2.0071 -3.2751 0.5208 36 1 0.4767 -2.3661 0.5175 37 1 -0.3822 -3.8288 -3.4642 38 1 1.1484 -4.7373 -3.4604 39 1 0.0233 -6.6265 -2.3135 40 1 -1.5070 -5.7173 -2.3175 41 1 -1.4585 -5.6482 -4.7961 42 1 0.0719 -6.5573 -4.7914 43 1 -1.0545 -8.4457 -3.6444 44 1 -2.5844 -7.5361 -3.6494 45 1 -3.3822 -10.6393 -7.0911 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000805695646.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:45:37 Heat of formation + Delta-G solvation = -38.020105 kcal Electronic energy + Delta-G solvation = -25801.995673 eV Core-core repulsion = 21977.086704 eV Total energy + Delta-G solvation = -3824.908968 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -42.03167 -40.57026 -38.36135 -36.83324 -35.46400 -35.13037 -33.23209 -32.63522 -31.45993 -30.38205 -28.63849 -28.26461 -26.13050 -23.88565 -23.50305 -22.76779 -22.45309 -20.56744 -20.09971 -19.02190 -18.65306 -17.72792 -16.96963 -16.73795 -16.60529 -16.20354 -15.71864 -15.51585 -14.89437 -14.74195 -14.27257 -14.18174 -13.88948 -13.78443 -13.55007 -13.14366 -12.87992 -12.63866 -12.47671 -12.34390 -12.23258 -12.19217 -12.08406 -11.99764 -11.87155 -11.77871 -11.17852 -10.91454 -10.81544 -10.60229 -10.59108 -9.89289 -9.69363 -9.62190 -9.54418 -9.31898 -9.14673 -9.06871 -8.50783 -6.01680 -3.99528 -0.33489 -0.02253 1.40631 2.07004 2.15719 2.64808 3.33938 3.38042 3.41260 3.46387 3.47842 3.53717 3.71303 4.08406 4.17140 4.38444 4.48554 4.55676 4.59956 4.63930 4.78534 4.85872 4.99847 5.09211 5.12032 5.17628 5.19415 5.29747 5.32926 5.38649 5.50150 5.56636 5.62205 5.75033 5.81620 5.93147 6.02470 6.14896 6.21844 6.32117 6.59833 6.73686 6.78140 6.94063 7.22850 7.34278 7.47044 7.66360 7.82902 8.56629 9.03241 9.61331 11.11750 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.027382 B = 0.001725 C = 0.001695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1022.306483 B =16230.681152 C =16518.095776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C 0.130 3.870 3 N -0.428 5.428 4 C 0.091 3.909 5 C -0.088 4.088 6 C -0.093 4.093 7 C -0.104 4.104 8 C -0.076 4.076 9 C 0.072 3.928 10 N -0.399 5.399 11 C 0.102 3.898 12 C 0.116 3.884 13 O -0.353 6.353 14 C 0.463 3.537 15 O -0.503 6.503 16 C -0.111 4.111 17 C -0.111 4.111 18 C -0.103 4.103 19 C -0.015 4.015 20 C -0.521 4.521 21 H 0.071 0.929 22 C 0.065 3.935 23 N -0.905 5.905 24 Si 0.880 3.120 25 H -0.277 1.277 26 H -0.288 1.288 27 H -0.265 1.265 28 H 0.093 0.907 29 H 0.085 0.915 30 H 0.086 0.914 31 H 0.141 0.859 32 H 0.137 0.863 33 H 0.137 0.863 34 H 0.142 0.858 35 H 0.093 0.907 36 H 0.098 0.902 37 H 0.106 0.894 38 H 0.106 0.894 39 H 0.067 0.933 40 H 0.067 0.933 41 H 0.056 0.944 42 H 0.056 0.944 43 H 0.016 0.984 44 H 0.012 0.988 45 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.449 27.464 17.786 36.622 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.025 4.025 3 N -0.143 5.143 4 C -0.033 4.033 5 C -0.108 4.108 6 C -0.113 4.113 7 C -0.124 4.124 8 C -0.095 4.095 9 C -0.053 4.053 10 N -0.114 5.114 11 C -0.054 4.054 12 C 0.041 3.959 13 O -0.270 6.270 14 C 0.307 3.693 15 O -0.389 6.389 16 C -0.148 4.148 17 C -0.149 4.149 18 C -0.140 4.140 19 C -0.053 4.053 20 C -0.559 4.559 21 H 0.089 0.911 22 C -0.136 4.136 23 N -0.544 5.544 24 Si 0.707 3.293 25 H -0.203 1.203 26 H -0.214 1.214 27 H -0.189 1.189 28 H 0.112 0.888 29 H 0.103 0.897 30 H 0.105 0.895 31 H 0.159 0.841 32 H 0.155 0.845 33 H 0.155 0.845 34 H 0.160 0.840 35 H 0.112 0.888 36 H 0.116 0.884 37 H 0.124 0.876 38 H 0.124 0.876 39 H 0.085 0.915 40 H 0.086 0.914 41 H 0.074 0.926 42 H 0.075 0.925 43 H 0.034 0.966 44 H 0.030 0.970 45 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 16.441 27.238 18.005 36.557 hybrid contribution -0.261 -0.608 0.783 1.025 sum 16.180 26.630 18.788 36.386 Atomic orbital electron populations 1.20924 0.86996 1.04410 1.04554 1.22384 0.98676 0.88371 0.93070 1.68601 1.07222 1.28312 1.10185 1.19663 0.90232 0.94381 0.99067 1.20821 0.93814 0.96626 0.99493 1.21070 0.93981 0.98795 0.97428 1.21043 1.00950 0.91809 0.98552 1.20862 0.90914 0.99628 0.98110 1.19600 0.95470 0.88913 1.01349 1.68430 1.07511 1.28783 1.06718 1.21799 0.90447 0.95171 0.97972 1.21618 0.99626 0.92056 0.82564 1.86576 1.69269 1.41071 1.30055 1.24251 0.73848 0.77553 0.93676 1.90682 1.48977 1.56197 1.43094 1.21610 1.03838 1.00029 0.89369 1.21619 0.99804 0.93525 0.99935 1.21481 1.00501 0.98967 0.93076 1.19575 0.95030 0.92875 0.97781 1.21173 1.35402 1.07464 0.91822 0.91050 1.25043 0.95576 0.97328 0.95642 1.69920 1.41204 1.22499 1.20792 0.86776 0.79573 0.79164 0.83775 1.20319 1.21440 1.18927 0.88826 0.89672 0.89482 0.84129 0.84496 0.84466 0.84049 0.88832 0.88374 0.87585 0.87613 0.91463 0.91433 0.92564 0.92547 0.96560 0.96989 0.92795 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.76 9.77 36.01 0.35 -0.41 16 2 C 0.13 1.29 6.79 -82.27 -0.56 0.73 16 3 N -0.43 -4.62 10.38 -7.06 -0.07 -4.69 16 4 C 0.09 0.94 6.59 -84.80 -0.56 0.38 16 5 C -0.09 -0.64 9.99 -39.48 -0.39 -1.04 16 6 C -0.09 -0.47 9.95 -39.93 -0.40 -0.87 16 7 C -0.10 -0.55 9.95 -39.93 -0.40 -0.95 16 8 C -0.08 -0.59 9.99 -39.48 -0.39 -0.98 16 9 C 0.07 0.76 6.59 -84.80 -0.56 0.20 16 10 N -0.40 -4.72 10.38 -7.06 -0.07 -4.79 16 11 C 0.10 1.11 6.43 -82.28 -0.53 0.58 16 12 C 0.12 1.19 5.34 36.00 0.19 1.38 16 13 O -0.35 -4.20 10.20 -39.25 -0.40 -4.60 16 14 C 0.46 6.05 7.96 36.00 0.29 6.34 16 15 O -0.50 -7.84 15.73 -18.75 -0.29 -8.14 16 16 C -0.11 -1.36 5.81 -27.88 -0.16 -1.52 16 17 C -0.11 -1.75 4.51 -26.73 -0.12 -1.87 16 18 C -0.10 -1.94 5.15 -26.73 -0.14 -2.08 16 19 C -0.02 -0.37 4.04 -27.88 -0.11 -0.48 16 20 C -0.52 -14.96 9.66 -34.44 -0.33 -15.29 16 21 H 0.07 2.18 7.99 -52.48 -0.42 1.76 16 22 C 0.06 1.92 5.47 -17.82 -0.10 1.82 16 23 N -0.90 -28.17 13.96 55.43 0.77 -27.39 16 24 Si 0.88 22.08 27.47 -169.99 -4.67 17.41 16 25 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 26 H -0.29 -7.16 7.11 56.52 0.40 -6.75 16 27 H -0.26 -6.42 6.54 56.52 0.37 -6.05 16 28 H 0.09 0.60 8.14 -51.93 -0.42 0.17 16 29 H 0.08 0.47 5.90 -51.93 -0.31 0.17 16 30 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.14 0.80 8.06 -52.48 -0.42 0.38 16 32 H 0.14 0.29 8.06 -52.49 -0.42 -0.13 16 33 H 0.14 0.34 8.06 -52.49 -0.42 -0.09 16 34 H 0.14 0.92 8.06 -52.49 -0.42 0.50 16 35 H 0.09 0.98 8.13 -51.93 -0.42 0.56 16 36 H 0.10 0.81 5.90 -51.93 -0.31 0.50 16 37 H 0.11 1.11 8.14 -51.93 -0.42 0.69 16 38 H 0.11 1.16 8.14 -51.93 -0.42 0.74 16 39 H 0.07 1.10 8.10 -51.93 -0.42 0.68 16 40 H 0.07 1.08 8.10 -51.93 -0.42 0.66 16 41 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 42 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 43 H 0.02 0.39 7.20 -51.93 -0.37 0.02 16 44 H 0.01 0.28 7.57 -51.93 -0.39 -0.11 16 45 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 LS Contribution 381.13 15.07 5.74 5.74 Total: -1.00 -35.25 381.13 -9.37 -44.62 By element: Atomic # 1 Polarization: 2.36 SS G_CDS: -6.46 Total: -4.10 kcal Atomic # 6 Polarization: -10.14 SS G_CDS: -3.92 Total: -14.06 kcal Atomic # 7 Polarization: -37.51 SS G_CDS: 0.63 Total: -36.88 kcal Atomic # 8 Polarization: -12.04 SS G_CDS: -0.70 Total: -12.74 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -4.67 Total: 17.41 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -35.25 -9.37 -44.62 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000805695646.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.599 kcal (2) G-P(sol) polarization free energy of solvation -35.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.619 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.020 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds