Wall clock time and date at job start Tue Mar 31 2020 15:59:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 N 1.30496 * 125.65280 * 2 1 4 4 C 1.34128 * 109.25692 * 180.29001 * 3 2 1 5 5 C 1.34672 * 108.02223 * 359.72926 * 4 3 2 6 6 N 1.35049 * 125.65001 * 179.82357 * 2 1 3 7 7 C 1.46502 * 126.39274 * 359.97438 * 6 2 1 8 8 C 1.53000 * 109.47151 * 84.71198 * 7 6 2 9 9 H 1.08997 * 109.47551 * 304.99814 * 8 7 6 10 10 C 1.53002 * 109.46870 * 184.99440 * 8 7 6 11 11 O 1.45207 * 109.47141 * 64.99988 * 8 7 6 12 12 C 1.34224 * 116.99815 * 210.00019 * 11 8 7 13 13 O 1.20829 * 120.00369 * 359.97438 * 12 11 8 14 14 C 1.50707 * 119.99811 * 180.02562 * 12 11 8 15 15 C 1.50701 * 109.46977 * 180.02562 * 14 12 11 16 16 C 1.37637 * 120.12547 * 264.99579 * 15 14 12 17 17 C 1.38619 * 120.24913 * 180.29699 * 16 15 14 18 18 C 1.38654 * 120.49499 * 359.44683 * 17 16 15 19 19 C 1.37593 * 120.25566 * 0.55737 * 18 17 16 20 20 C 1.40694 * 120.12727 * 85.02080 * 15 14 12 21 21 C 1.41388 * 120.24927 * 359.95455 * 20 15 14 22 22 H 1.08003 * 119.99773 * 334.07854 * 21 20 15 23 23 C 1.39940 * 120.00392 * 154.08554 * 21 20 15 24 24 N 1.30822 * 119.99912 * 343.62181 * 23 21 20 25 25 Si 1.86803 * 120.00192 * 163.63284 * 23 21 20 26 26 H 1.48496 * 109.47262 * 59.99447 * 25 23 21 27 27 H 1.48504 * 109.47090 * 179.97438 * 25 23 21 28 28 H 1.48504 * 109.46694 * 299.99081 * 25 23 21 29 29 H 1.09001 * 109.47489 * 270.17650 * 1 2 3 30 30 H 1.09009 * 109.46786 * 30.17553 * 1 2 3 31 31 H 1.09004 * 109.47278 * 150.17149 * 1 2 3 32 32 H 1.07999 * 125.99117 * 179.72607 * 4 3 2 33 33 H 1.07997 * 126.59065 * 179.97438 * 5 4 3 34 34 H 1.08999 * 109.47412 * 324.71214 * 7 6 2 35 35 H 1.08999 * 109.46915 * 204.71256 * 7 6 2 36 36 H 1.09000 * 109.46868 * 60.00443 * 10 8 7 37 37 H 1.09001 * 109.46668 * 180.02562 * 10 8 7 38 38 H 1.08996 * 109.47554 * 299.99998 * 10 8 7 39 39 H 1.08998 * 109.47152 * 59.99388 * 14 12 11 40 40 H 1.09000 * 109.46625 * 299.99818 * 14 12 11 41 41 H 1.08002 * 119.87664 * 0.02839 * 16 15 14 42 42 H 1.08000 * 119.74896 * 179.70344 * 17 16 15 43 43 H 1.08006 * 119.86868 * 180.29864 * 18 17 16 44 44 H 1.07991 * 120.13397 * 179.74834 * 19 18 17 45 45 H 0.97001 * 120.00439 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2676 1.0604 0.0000 4 6 3.5543 0.6818 -0.0064 5 6 3.5925 -0.6644 -0.0045 6 7 2.2941 -1.0974 0.0034 7 6 1.8424 -2.4910 0.0082 8 6 1.5582 -2.9400 -1.4266 9 1 0.8473 -2.2544 -1.8878 10 6 0.9689 -4.3519 -1.4118 11 8 2.7947 -2.9396 -2.1878 12 6 2.6999 -2.6936 -3.5039 13 8 1.6195 -2.4860 -4.0035 14 6 3.9410 -2.6775 -4.3587 15 6 3.5633 -2.3797 -5.7869 16 6 3.3618 -3.4096 -6.6774 17 6 3.0204 -3.1384 -7.9932 18 6 2.8668 -1.8298 -8.4249 19 6 3.0634 -0.7843 -7.5522 20 6 3.4159 -1.0476 -6.2153 21 6 3.6200 0.0186 -5.3094 22 1 3.4749 -0.1372 -4.2506 23 6 4.0097 1.2758 -5.7847 24 7 4.4923 1.3968 -6.9946 25 14 3.8410 2.7811 -4.6915 26 1 4.6539 2.5942 -3.4629 27 1 4.3201 3.9809 -5.4238 28 1 2.4153 2.9648 -4.3187 29 1 -0.3634 0.0032 1.0276 30 1 -0.3633 0.8885 -0.5166 31 1 -0.3634 -0.8915 -0.5112 32 1 4.4098 1.3409 -0.0122 33 1 4.4776 -1.2833 -0.0087 34 1 0.9326 -2.5761 0.6025 35 1 2.6186 -3.1230 0.4397 36 1 0.0407 -4.3523 -0.8404 37 1 0.7669 -4.6719 -2.4340 38 1 1.6798 -5.0376 -0.9507 39 1 4.4303 -3.6501 -4.3071 40 1 4.6223 -1.9082 -3.9954 41 1 3.4744 -4.4329 -6.3508 42 1 2.8689 -3.9527 -8.6863 43 1 2.5959 -1.6302 -9.4512 44 1 2.9472 0.2343 -7.8915 45 1 4.7621 2.2683 -7.3243 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000810612647.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:59:09 Heat of formation + Delta-G solvation = -15.273640 kcal Electronic energy + Delta-G solvation = -28528.105791 eV Core-core repulsion = 24704.183183 eV Total energy + Delta-G solvation = -3823.922608 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.99229 -40.08218 -37.76522 -36.42110 -34.39569 -33.65015 -32.03153 -31.68475 -31.36067 -29.50320 -27.17084 -27.09343 -26.30347 -25.10059 -22.67341 -21.27396 -20.98779 -20.78789 -19.66159 -19.39510 -17.34413 -17.23892 -17.13267 -16.25782 -15.55753 -15.36816 -15.07728 -14.60879 -14.41998 -14.02345 -13.80138 -13.70167 -13.48216 -13.25355 -13.04523 -12.71027 -12.61900 -12.53198 -12.46310 -12.30497 -12.15335 -11.82161 -11.55888 -11.31820 -11.17555 -11.06297 -10.97504 -10.72055 -10.50886 -10.39771 -9.83931 -9.79513 -9.53620 -9.46608 -9.40522 -9.15480 -8.18286 -7.38817 -7.35009 -6.75814 -4.38154 2.13480 2.62930 2.78465 2.88785 2.90564 3.11206 3.19805 3.24366 3.30953 3.32891 3.98300 4.40880 4.52325 4.56370 4.64702 4.74063 4.83141 4.99156 5.14436 5.22164 5.36010 5.43783 5.56965 5.60197 5.64724 5.73067 5.80034 5.89211 5.93904 5.96475 6.06050 6.22704 6.36675 6.39811 6.46253 6.70553 6.88390 6.92002 7.06573 7.24715 7.27960 7.37185 7.59830 7.86301 8.01740 8.08458 8.25854 8.26819 8.39243 8.61565 8.88118 8.96352 10.17818 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.010290 B = 0.005394 C = 0.003893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2720.517834 B = 5189.376042 C = 7190.017904 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C 0.199 3.801 3 N -0.490 5.490 4 C -0.030 4.030 5 C -0.041 4.041 6 N -0.455 5.455 7 C 0.110 3.890 8 C 0.065 3.935 9 H 0.090 0.910 10 C -0.166 4.166 11 O -0.359 6.359 12 C 0.461 3.539 13 O -0.490 6.490 14 C -0.039 4.039 15 C -0.198 4.198 16 C -0.076 4.076 17 C -0.242 4.242 18 C -0.103 4.103 19 C -0.158 4.158 20 C 0.131 3.869 21 C -0.455 4.455 22 H 0.072 0.928 23 C 0.080 3.920 24 N -0.792 5.792 25 Si 0.901 3.099 26 H -0.261 1.261 27 H -0.278 1.278 28 H -0.263 1.263 29 H 0.077 0.923 30 H 0.090 0.910 31 H 0.070 0.930 32 H 0.167 0.833 33 H 0.174 0.826 34 H 0.108 0.892 35 H 0.103 0.897 36 H 0.074 0.926 37 H 0.071 0.929 38 H 0.068 0.932 39 H 0.087 0.913 40 H 0.106 0.894 41 H 0.085 0.915 42 H 0.086 0.914 43 H 0.087 0.913 44 H 0.118 0.882 45 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.507 -7.400 14.088 16.295 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.062 4.062 3 N -0.209 5.209 4 C -0.177 4.177 5 C -0.174 4.174 6 N -0.138 5.138 7 C -0.013 4.013 8 C 0.009 3.991 9 H 0.108 0.892 10 C -0.223 4.223 11 O -0.278 6.278 12 C 0.303 3.697 13 O -0.374 6.374 14 C -0.077 4.077 15 C -0.199 4.199 16 C -0.094 4.094 17 C -0.261 4.261 18 C -0.122 4.122 19 C -0.177 4.177 20 C 0.129 3.871 21 C -0.484 4.484 22 H 0.090 0.910 23 C -0.138 4.138 24 N -0.417 5.417 25 Si 0.725 3.275 26 H -0.186 1.186 27 H -0.203 1.203 28 H -0.187 1.187 29 H 0.096 0.904 30 H 0.109 0.891 31 H 0.089 0.911 32 H 0.185 0.815 33 H 0.191 0.809 34 H 0.126 0.874 35 H 0.121 0.879 36 H 0.092 0.908 37 H 0.090 0.910 38 H 0.087 0.913 39 H 0.105 0.895 40 H 0.124 0.876 41 H 0.103 0.897 42 H 0.105 0.895 43 H 0.105 0.895 44 H 0.135 0.865 45 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -4.070 -6.477 13.802 15.780 hybrid contribution 0.261 -0.137 0.270 0.400 sum -3.809 -6.614 14.072 16.009 Atomic orbital electron populations 1.20182 0.85333 1.04204 1.02997 1.23243 0.95591 0.81477 1.05938 1.70209 1.02431 1.28287 1.19974 1.22250 0.94674 0.92907 1.07913 1.22664 0.86903 0.96707 1.11083 1.45286 1.06775 1.06727 1.55058 1.22034 1.02779 0.80208 0.96238 1.22951 0.86942 0.98818 0.90432 0.89208 1.22126 1.01109 0.95124 1.03984 1.86604 1.35520 1.82827 1.22866 1.24540 0.93019 0.72072 0.80020 1.90632 1.30191 1.43592 1.73010 1.19977 0.92265 1.03288 0.92149 1.19018 1.14823 0.94036 0.92052 1.20300 0.99335 0.95997 0.93777 1.20297 1.14646 0.95462 0.95707 1.20696 1.00515 0.93354 0.97633 1.21303 1.04127 0.98025 0.94280 1.17341 0.86791 0.90607 0.92367 1.19441 1.40477 0.93738 0.94722 0.90971 1.25861 0.92150 1.00509 0.95273 1.69804 1.28767 1.26231 1.16857 0.86454 0.80418 0.79836 0.80753 1.18573 1.20307 1.18716 0.90411 0.89089 0.91086 0.81523 0.80886 0.87417 0.87869 0.90757 0.91001 0.91325 0.89501 0.87555 0.89673 0.89544 0.89461 0.86450 0.90765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.76 10.04 36.00 0.36 -0.40 16 2 C 0.20 3.00 7.90 -155.42 -1.23 1.77 16 3 N -0.49 -8.73 11.25 -10.82 -0.12 -8.85 16 4 C -0.03 -0.49 11.87 -17.81 -0.21 -0.70 16 5 C -0.04 -0.58 11.58 -16.56 -0.19 -0.78 16 6 N -0.45 -6.11 2.70 -113.91 -0.31 -6.42 16 7 C 0.11 1.08 5.35 -4.04 -0.02 1.06 16 8 C 0.06 0.82 2.80 -26.73 -0.07 0.75 16 9 H 0.09 1.37 6.72 -51.93 -0.35 1.02 16 10 C -0.17 -1.62 9.55 37.16 0.35 -1.26 16 11 O -0.36 -5.76 9.83 -39.24 -0.39 -6.15 16 12 C 0.46 9.13 7.56 36.01 0.27 9.40 16 13 O -0.49 -11.28 15.25 -18.75 -0.29 -11.57 16 14 C -0.04 -0.79 5.29 -29.03 -0.15 -0.94 16 15 C -0.20 -4.74 4.43 -103.91 -0.46 -5.20 16 16 C -0.08 -1.72 9.66 -39.66 -0.38 -2.11 16 17 C -0.24 -5.56 10.05 -39.29 -0.39 -5.95 16 18 C -0.10 -2.50 10.02 -39.66 -0.40 -2.90 16 19 C -0.16 -4.22 8.68 -38.87 -0.34 -4.56 16 20 C 0.13 3.52 5.56 -106.82 -0.59 2.93 16 21 C -0.45 -12.19 8.14 -37.75 -0.31 -12.50 16 22 H 0.07 1.93 6.68 -52.48 -0.35 1.58 16 23 C 0.08 2.07 5.16 -17.34 -0.09 1.98 16 24 N -0.79 -20.66 10.97 55.55 0.61 -20.05 16 25 Si 0.90 20.01 29.59 -169.99 -5.03 14.98 16 26 H -0.26 -5.74 7.11 56.52 0.40 -5.34 16 27 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 28 H -0.26 -6.04 7.11 56.52 0.40 -5.64 16 29 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.09 1.06 8.14 -51.92 -0.42 0.64 16 31 H 0.07 0.68 7.41 -51.93 -0.38 0.30 16 32 H 0.17 2.37 8.06 -52.49 -0.42 1.95 16 33 H 0.17 1.98 8.06 -52.49 -0.42 1.55 16 34 H 0.11 0.72 7.94 -51.93 -0.41 0.31 16 35 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 36 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 37 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 38 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 39 H 0.09 1.45 8.05 -51.93 -0.42 1.03 16 40 H 0.11 2.15 7.06 -51.93 -0.37 1.79 16 41 H 0.09 1.68 8.06 -52.49 -0.42 1.26 16 42 H 0.09 1.75 8.06 -52.49 -0.42 1.33 16 43 H 0.09 1.88 8.06 -52.48 -0.42 1.46 16 44 H 0.12 3.22 6.22 -52.49 -0.33 2.90 16 45 H 0.28 6.74 8.30 -40.82 -0.34 6.40 16 LS Contribution 382.08 15.07 5.76 5.76 Total: -1.00 -33.33 382.08 -10.01 -43.35 By element: Atomic # 1 Polarization: 14.75 SS G_CDS: -6.39 Total: 8.35 kcal Atomic # 6 Polarization: -15.55 SS G_CDS: -3.86 Total: -19.41 kcal Atomic # 7 Polarization: -35.50 SS G_CDS: 0.18 Total: -35.32 kcal Atomic # 8 Polarization: -17.04 SS G_CDS: -0.67 Total: -17.71 kcal Atomic # 14 Polarization: 20.01 SS G_CDS: -5.03 Total: 14.98 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -33.33 -10.01 -43.35 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000810612647.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.074 kcal (2) G-P(sol) polarization free energy of solvation -33.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.260 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.348 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds