Wall clock time and date at job start Tue Mar 31 2020 15:29:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.30872 * 125.87309 * 2 1 4 4 N 1.40086 * 108.21690 * 180.13694 * 3 2 1 5 5 C 1.40181 * 126.05683 * 179.88080 * 4 3 2 6 6 C 1.38845 * 120.06320 * 324.69146 * 5 4 3 7 7 C 1.38125 * 119.92894 * 179.97438 * 6 5 4 8 8 C 1.38273 * 120.06983 * 0.02562 * 7 6 5 9 9 C 1.38285 * 120.13300 * 359.97438 * 8 7 6 10 10 C 1.38118 * 120.06661 * 0.02562 * 9 8 7 11 11 C 1.35225 * 107.89307 * 359.61755 * 4 3 2 12 12 C 1.50696 * 126.14571 * 180.22261 * 11 4 3 13 13 C 1.35322 * 107.71276 * 0.22679 * 11 4 3 14 14 C 1.50696 * 126.03534 * 180.02562 * 13 11 4 15 15 O 1.45196 * 109.47337 * 89.99806 * 14 13 11 16 16 C 1.34229 * 117.00286 * 179.97438 * 15 14 13 17 17 O 1.20830 * 119.99821 * 0.02562 * 16 15 14 18 18 C 1.50702 * 120.00110 * 179.97438 * 16 15 14 19 19 C 1.53000 * 109.47050 * 180.02562 * 18 16 15 20 20 C 1.50698 * 109.47252 * 180.02562 * 19 18 16 21 21 H 1.07994 * 119.99766 * 359.97438 * 20 19 18 22 22 C 1.37875 * 120.00188 * 180.02562 * 20 19 18 23 23 N 1.31520 * 119.99640 * 359.97438 * 22 20 19 24 24 Si 1.86797 * 120.00144 * 179.97438 * 22 20 19 25 25 H 1.48502 * 109.47271 * 359.97438 * 24 22 20 26 26 H 1.48500 * 109.47385 * 119.99385 * 24 22 20 27 27 H 1.48499 * 109.47173 * 239.99690 * 24 22 20 28 28 H 1.09001 * 109.47122 * 270.27963 * 1 2 3 29 29 H 1.08993 * 109.47584 * 30.28019 * 1 2 3 30 30 H 1.08996 * 109.46874 * 150.28556 * 1 2 3 31 31 H 1.07998 * 120.03278 * 0.25553 * 6 5 4 32 32 H 1.08000 * 119.96142 * 179.97438 * 7 6 5 33 33 H 1.07998 * 119.93705 * 179.97438 * 8 7 6 34 34 H 1.07999 * 119.96284 * 180.02562 * 9 8 7 35 35 H 1.08000 * 120.03400 * 179.97438 * 10 9 8 36 36 H 1.09002 * 109.46988 * 90.02670 * 12 11 4 37 37 H 1.09010 * 109.47372 * 210.02610 * 12 11 4 38 38 H 1.09002 * 109.47388 * 330.02477 * 12 11 4 39 39 H 1.09009 * 109.47023 * 209.99935 * 14 13 11 40 40 H 1.09006 * 109.47109 * 329.99481 * 14 13 11 41 41 H 1.08999 * 109.47267 * 300.00313 * 18 16 15 42 42 H 1.08997 * 109.46563 * 60.00856 * 18 16 15 43 43 H 1.09008 * 109.46985 * 300.00777 * 19 18 16 44 44 H 1.09000 * 109.47283 * 59.99990 * 19 18 16 45 45 H 0.97006 * 119.99614 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2740 1.0605 0.0000 4 7 3.6088 0.6356 -0.0032 5 6 4.7388 1.4652 -0.0066 6 6 4.7173 2.6669 -0.7018 7 6 5.8320 3.4825 -0.7028 8 6 6.9687 3.1031 -0.0129 9 6 6.9931 1.9068 0.6804 10 6 5.8816 1.0870 0.6852 11 6 3.6144 -0.7166 0.0035 12 6 4.8350 -1.6004 0.0078 13 6 2.3271 -1.1337 0.0056 14 6 1.8593 -2.5662 0.0132 15 8 1.7089 -3.0190 1.3845 16 6 1.2953 -4.2828 1.5672 17 8 1.0669 -4.9876 0.6126 18 6 1.1169 -4.8231 2.9626 19 6 0.6424 -6.2759 2.8903 20 6 0.4634 -6.8160 4.2857 21 1 0.6680 -6.1862 5.1388 22 6 0.0395 -8.1145 4.4733 23 7 -0.2092 -8.8815 3.4342 24 14 -0.1818 -8.7841 6.2030 25 1 0.1615 -7.7291 7.1900 26 1 -1.5938 -9.2018 6.3953 27 1 0.7115 -9.9541 6.3988 28 1 -0.3633 0.0050 1.0277 29 1 -0.3634 0.8874 -0.5181 30 1 -0.3633 -0.8925 -0.5094 31 1 3.8283 2.9657 -1.2373 32 1 5.8160 4.4171 -1.2437 33 1 7.8393 3.7422 -0.0155 34 1 7.8822 1.6134 1.2186 35 1 5.9013 0.1527 1.2265 36 1 5.1291 -1.8088 1.0365 37 1 4.6075 -2.5368 -0.5019 38 1 5.6514 -1.0951 -0.5082 39 1 0.9005 -2.6380 -0.5004 40 1 2.5926 -3.1906 -0.4973 41 1 2.0674 -4.7777 3.4942 42 1 0.3756 -4.2244 3.4919 43 1 -0.3080 -6.3216 2.3585 44 1 1.3840 -6.8743 2.3610 45 1 -0.5078 -9.7950 3.5662 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000812835075.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:29:23 Heat of formation + Delta-G solvation = 2.858718 kcal Electronic energy + Delta-G solvation = -26517.967928 eV Core-core repulsion = 22694.831598 eV Total energy + Delta-G solvation = -3823.136330 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.01282 -39.84995 -39.35854 -36.15933 -34.55838 -33.56217 -33.04690 -31.41862 -31.15685 -30.76257 -28.82775 -27.54195 -26.31097 -25.20172 -23.16956 -22.72263 -22.03961 -20.03634 -19.74754 -19.73826 -17.96942 -17.30275 -16.75594 -16.29228 -16.02159 -15.95114 -15.47804 -15.03249 -14.66774 -14.44098 -14.28951 -14.09609 -13.80497 -13.63814 -13.38383 -13.23239 -13.08539 -12.71886 -12.58093 -12.29629 -12.24879 -12.19588 -12.04302 -11.84149 -11.54649 -11.16801 -10.97289 -10.79995 -10.61463 -10.27161 -10.15468 -10.02632 -9.89524 -9.57287 -9.48836 -9.16127 -9.04715 -8.39457 -8.37106 -6.00831 -4.05381 0.49065 0.84889 1.68809 2.06215 2.26996 2.88140 3.25351 3.31197 3.38048 3.41426 3.50613 4.16917 4.25659 4.42585 4.45171 4.47687 4.63241 4.67129 4.87920 4.91568 4.99635 5.03753 5.14813 5.17956 5.28598 5.34671 5.35739 5.47342 5.49785 5.57970 5.66747 5.74147 5.77271 5.85796 5.89236 5.97267 6.00539 6.15418 6.23541 6.28285 6.41167 6.69697 6.89391 6.99907 7.41971 7.68283 7.75421 7.99408 8.28788 8.46244 9.02134 9.58621 11.10187 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.020375 B = 0.002116 C = 0.002013 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1373.919558 B =13227.476653 C =13909.686972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.107 3.893 3 N -0.292 5.292 4 N -0.327 5.327 5 C 0.158 3.842 6 C -0.112 4.112 7 C -0.101 4.101 8 C -0.124 4.124 9 C -0.098 4.098 10 C -0.132 4.132 11 C 0.116 3.884 12 C -0.102 4.102 13 C -0.234 4.234 14 C 0.145 3.855 15 O -0.362 6.362 16 C 0.456 3.544 17 O -0.508 6.508 18 C -0.104 4.104 19 C 0.033 3.967 20 C -0.527 4.527 21 H 0.059 0.941 22 C 0.058 3.942 23 N -0.889 5.889 24 Si 0.895 3.105 25 H -0.272 1.272 26 H -0.284 1.284 27 H -0.284 1.284 28 H 0.085 0.915 29 H 0.075 0.925 30 H 0.081 0.919 31 H 0.133 0.867 32 H 0.131 0.869 33 H 0.129 0.871 34 H 0.133 0.867 35 H 0.134 0.866 36 H 0.090 0.910 37 H 0.091 0.909 38 H 0.076 0.924 39 H 0.077 0.923 40 H 0.073 0.927 41 H 0.091 0.909 42 H 0.091 0.909 43 H 0.026 0.974 44 H 0.026 0.974 45 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.468 25.011 -9.560 29.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.060 4.060 3 N -0.111 5.111 4 N -0.102 5.102 5 C 0.066 3.934 6 C -0.132 4.132 7 C -0.120 4.120 8 C -0.143 4.143 9 C -0.117 4.117 10 C -0.153 4.153 11 C -0.008 4.008 12 C -0.160 4.160 13 C -0.244 4.244 14 C 0.070 3.930 15 O -0.280 6.280 16 C 0.299 3.701 17 O -0.394 6.394 18 C -0.141 4.141 19 C -0.004 4.004 20 C -0.565 4.565 21 H 0.077 0.923 22 C -0.144 4.144 23 N -0.528 5.528 24 Si 0.723 3.277 25 H -0.197 1.197 26 H -0.210 1.210 27 H -0.210 1.210 28 H 0.103 0.897 29 H 0.094 0.906 30 H 0.100 0.900 31 H 0.151 0.849 32 H 0.149 0.851 33 H 0.147 0.853 34 H 0.151 0.849 35 H 0.152 0.848 36 H 0.108 0.892 37 H 0.109 0.891 38 H 0.095 0.905 39 H 0.095 0.905 40 H 0.091 0.909 41 H 0.109 0.891 42 H 0.110 0.890 43 H 0.044 0.956 44 H 0.044 0.956 45 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 13.437 25.954 -9.940 30.870 hybrid contribution -0.188 -1.269 0.774 1.498 sum 13.248 24.685 -9.166 29.477 Atomic orbital electron populations 1.20281 0.85926 1.03552 1.03811 1.22404 0.97228 0.89825 0.96553 1.77480 0.85055 1.22019 1.26582 1.45603 1.04363 1.03343 1.56935 1.17474 0.84654 0.92102 0.99137 1.21032 0.99618 0.93525 0.98998 1.21087 0.92471 0.99451 0.98991 1.21275 0.98490 0.96844 0.97668 1.21041 0.97778 0.94024 0.98833 1.21181 0.92710 1.01745 0.99650 1.21002 0.97187 0.83789 0.98856 1.20728 0.92810 0.98376 1.04096 1.19392 0.91230 0.95232 1.18577 1.20850 1.01389 0.88928 0.81802 1.86652 1.78949 1.31662 1.30761 1.24745 0.72404 0.78643 0.94264 1.90632 1.46595 1.58427 1.43783 1.21754 1.03600 1.01111 0.87654 1.19018 0.97562 0.86410 0.97430 1.21202 1.45783 0.97458 0.92078 0.92283 1.25027 0.95381 0.97020 0.96972 1.70008 1.45606 1.07830 1.29346 0.86494 0.77759 0.78957 0.84522 1.19665 1.20973 1.20993 0.89675 0.90604 0.89981 0.84926 0.85077 0.85346 0.84871 0.84786 0.89177 0.89062 0.90476 0.90502 0.90886 0.89107 0.89034 0.95570 0.95604 0.92926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.79 10.26 36.01 0.37 -0.42 16 2 C 0.11 1.42 7.22 -82.37 -0.59 0.82 16 3 N -0.29 -4.07 12.34 33.69 0.42 -3.66 16 4 N -0.33 -4.15 3.73 -6.98 -0.03 -4.18 16 5 C 0.16 1.68 6.28 -83.59 -0.52 1.15 16 6 C -0.11 -1.04 9.77 -39.40 -0.38 -1.42 16 7 C -0.10 -0.69 10.04 -39.61 -0.40 -1.09 16 8 C -0.12 -0.75 10.04 -39.55 -0.40 -1.14 16 9 C -0.10 -0.64 10.04 -39.61 -0.40 -1.04 16 10 C -0.13 -1.13 8.28 -39.40 -0.33 -1.45 16 11 C 0.12 1.42 6.76 -82.14 -0.56 0.87 16 12 C -0.10 -0.92 8.38 36.00 0.30 -0.61 16 13 C -0.23 -3.15 5.74 -105.03 -0.60 -3.75 16 14 C 0.15 2.07 5.54 36.00 0.20 2.27 16 15 O -0.36 -6.11 10.20 -39.26 -0.40 -6.51 16 16 C 0.46 8.97 7.96 36.01 0.29 9.25 16 17 O -0.51 -11.44 15.73 -18.75 -0.30 -11.73 16 18 C -0.10 -2.13 5.75 -27.88 -0.16 -2.29 16 19 C 0.03 0.87 4.26 -27.88 -0.12 0.75 16 20 C -0.53 -14.74 9.11 -34.44 -0.31 -15.05 16 21 H 0.06 1.56 7.74 -52.49 -0.41 1.16 16 22 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 23 N -0.89 -26.98 13.29 55.43 0.74 -26.24 16 24 Si 0.89 21.45 29.54 -169.99 -5.02 16.43 16 25 H -0.27 -6.32 7.11 56.52 0.40 -5.92 16 26 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 27 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 28 H 0.08 0.85 8.14 -51.93 -0.42 0.42 16 29 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 30 H 0.08 0.78 7.25 -51.93 -0.38 0.40 16 31 H 0.13 1.25 8.06 -52.49 -0.42 0.83 16 32 H 0.13 0.59 8.06 -52.49 -0.42 0.16 16 33 H 0.13 0.46 8.06 -52.49 -0.42 0.04 16 34 H 0.13 0.55 8.06 -52.49 -0.42 0.13 16 35 H 0.13 1.03 6.09 -52.49 -0.32 0.71 16 36 H 0.09 0.74 7.74 -51.93 -0.40 0.33 16 37 H 0.09 0.78 7.15 -51.92 -0.37 0.41 16 38 H 0.08 0.57 6.89 -51.93 -0.36 0.21 16 39 H 0.08 1.06 7.25 -51.92 -0.38 0.68 16 40 H 0.07 0.99 7.14 -51.93 -0.37 0.62 16 41 H 0.09 1.71 8.14 -51.93 -0.42 1.29 16 42 H 0.09 1.74 8.14 -51.93 -0.42 1.32 16 43 H 0.03 0.74 8.10 -51.92 -0.42 0.32 16 44 H 0.03 0.73 8.10 -51.93 -0.42 0.31 16 45 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 LS Contribution 383.61 15.07 5.78 5.78 Total: -1.00 -34.77 383.61 -8.86 -43.64 By element: Atomic # 1 Polarization: 4.41 SS G_CDS: -6.34 Total: -1.93 kcal Atomic # 6 Polarization: -7.88 SS G_CDS: -3.71 Total: -11.60 kcal Atomic # 7 Polarization: -35.21 SS G_CDS: 1.13 Total: -34.08 kcal Atomic # 8 Polarization: -17.55 SS G_CDS: -0.70 Total: -18.25 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -34.77 -8.86 -43.64 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812835075.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.494 kcal (2) G-P(sol) polarization free energy of solvation -34.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.722 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.863 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.636 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds