Wall clock time and date at job start Tue Mar 31 2020 15:29:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.30872 * 125.87309 * 2 1 4 4 N 1.40086 * 108.21690 * 180.13694 * 3 2 1 5 5 C 1.40181 * 126.05683 * 179.88080 * 4 3 2 6 6 C 1.38845 * 120.06320 * 324.69146 * 5 4 3 7 7 C 1.38125 * 119.92894 * 179.97438 * 6 5 4 8 8 C 1.38273 * 120.06983 * 0.02562 * 7 6 5 9 9 C 1.38285 * 120.13300 * 359.97438 * 8 7 6 10 10 C 1.38118 * 120.06661 * 0.02562 * 9 8 7 11 11 C 1.35225 * 107.89307 * 359.61755 * 4 3 2 12 12 C 1.50696 * 126.14571 * 180.22261 * 11 4 3 13 13 C 1.35322 * 107.71276 * 0.22679 * 11 4 3 14 14 C 1.50696 * 126.03534 * 180.02562 * 13 11 4 15 15 O 1.45196 * 109.47337 * 89.99806 * 14 13 11 16 16 C 1.34229 * 117.00286 * 179.97438 * 15 14 13 17 17 O 1.20830 * 119.99821 * 0.02562 * 16 15 14 18 18 C 1.50702 * 120.00110 * 179.97438 * 16 15 14 19 19 C 1.53000 * 109.47050 * 180.02562 * 18 16 15 20 20 C 1.50698 * 109.47252 * 180.02562 * 19 18 16 21 21 H 1.07994 * 119.99766 * 359.97438 * 20 19 18 22 22 C 1.37875 * 120.00188 * 180.02562 * 20 19 18 23 23 N 1.31520 * 119.99640 * 359.97438 * 22 20 19 24 24 Si 1.86797 * 120.00144 * 179.97438 * 22 20 19 25 25 H 1.48502 * 109.47271 * 359.97438 * 24 22 20 26 26 H 1.48500 * 109.47385 * 119.99385 * 24 22 20 27 27 H 1.48499 * 109.47173 * 239.99690 * 24 22 20 28 28 H 1.09001 * 109.47122 * 270.27963 * 1 2 3 29 29 H 1.08993 * 109.47584 * 30.28019 * 1 2 3 30 30 H 1.08996 * 109.46874 * 150.28556 * 1 2 3 31 31 H 1.07998 * 120.03278 * 0.25553 * 6 5 4 32 32 H 1.08000 * 119.96142 * 179.97438 * 7 6 5 33 33 H 1.07998 * 119.93705 * 179.97438 * 8 7 6 34 34 H 1.07999 * 119.96284 * 180.02562 * 9 8 7 35 35 H 1.08000 * 120.03400 * 179.97438 * 10 9 8 36 36 H 1.09002 * 109.46988 * 90.02670 * 12 11 4 37 37 H 1.09010 * 109.47372 * 210.02610 * 12 11 4 38 38 H 1.09002 * 109.47388 * 330.02477 * 12 11 4 39 39 H 1.09009 * 109.47023 * 209.99935 * 14 13 11 40 40 H 1.09006 * 109.47109 * 329.99481 * 14 13 11 41 41 H 1.08999 * 109.47267 * 300.00313 * 18 16 15 42 42 H 1.08997 * 109.46563 * 60.00856 * 18 16 15 43 43 H 1.09008 * 109.46985 * 300.00777 * 19 18 16 44 44 H 1.09000 * 109.47283 * 59.99990 * 19 18 16 45 45 H 0.97006 * 119.99614 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2740 1.0605 0.0000 4 7 3.6088 0.6356 -0.0032 5 6 4.7388 1.4652 -0.0066 6 6 4.7173 2.6669 -0.7018 7 6 5.8320 3.4825 -0.7028 8 6 6.9687 3.1031 -0.0129 9 6 6.9931 1.9068 0.6804 10 6 5.8816 1.0870 0.6852 11 6 3.6144 -0.7166 0.0035 12 6 4.8350 -1.6004 0.0078 13 6 2.3271 -1.1337 0.0056 14 6 1.8593 -2.5662 0.0132 15 8 1.7089 -3.0190 1.3845 16 6 1.2953 -4.2828 1.5672 17 8 1.0669 -4.9876 0.6126 18 6 1.1169 -4.8231 2.9626 19 6 0.6424 -6.2759 2.8903 20 6 0.4634 -6.8160 4.2857 21 1 0.6680 -6.1862 5.1388 22 6 0.0395 -8.1145 4.4733 23 7 -0.2092 -8.8815 3.4342 24 14 -0.1818 -8.7841 6.2030 25 1 0.1615 -7.7291 7.1900 26 1 -1.5938 -9.2018 6.3953 27 1 0.7115 -9.9541 6.3988 28 1 -0.3633 0.0050 1.0277 29 1 -0.3634 0.8874 -0.5181 30 1 -0.3633 -0.8925 -0.5094 31 1 3.8283 2.9657 -1.2373 32 1 5.8160 4.4171 -1.2437 33 1 7.8393 3.7422 -0.0155 34 1 7.8822 1.6134 1.2186 35 1 5.9013 0.1527 1.2265 36 1 5.1291 -1.8088 1.0365 37 1 4.6075 -2.5368 -0.5019 38 1 5.6514 -1.0951 -0.5082 39 1 0.9005 -2.6380 -0.5004 40 1 2.5926 -3.1906 -0.4973 41 1 2.0674 -4.7777 3.4942 42 1 0.3756 -4.2244 3.4919 43 1 -0.3080 -6.3216 2.3585 44 1 1.3840 -6.8743 2.3610 45 1 -0.5078 -9.7950 3.5662 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000812835075.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:29:22 Heat of formation + Delta-G solvation = -15.498066 kcal Electronic energy + Delta-G solvation = -26518.763938 eV Core-core repulsion = 22694.831598 eV Total energy + Delta-G solvation = -3823.932340 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.91909 -41.35034 -40.01239 -37.64638 -35.61916 -35.37842 -33.97570 -33.09158 -31.99138 -31.55495 -29.81182 -28.34047 -28.03097 -26.45383 -24.12036 -23.71555 -23.29146 -21.41426 -20.86171 -20.69195 -19.05435 -18.76430 -18.10529 -17.51060 -17.32211 -16.92562 -16.80242 -16.45010 -15.71143 -15.54720 -15.36222 -14.85957 -14.73198 -14.56088 -14.39919 -14.25940 -14.18790 -14.00398 -13.72238 -13.53926 -13.34044 -13.27815 -13.07596 -12.99052 -12.84532 -12.48262 -12.45818 -12.16221 -11.98657 -11.81882 -11.72163 -11.53400 -11.40119 -11.24332 -10.89398 -10.56842 -10.05898 -9.97169 -9.22333 -8.18498 -6.31784 -0.20564 0.28795 0.84295 1.16815 1.28971 1.29947 1.44625 1.45132 1.58752 2.14032 2.45411 2.67066 3.15297 3.33441 3.45412 3.76688 3.84635 3.86202 3.94109 4.01388 4.14612 4.19350 4.32456 4.35961 4.38809 4.44609 4.48321 4.49451 4.56067 4.58905 4.70774 4.83180 4.84086 4.95890 4.96460 4.97759 4.99099 5.27385 5.33412 5.43400 5.45773 5.50469 5.52912 5.58812 5.74019 5.83227 6.11721 6.15801 6.48617 6.83481 6.91131 7.38215 8.94228 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.020375 B = 0.002116 C = 0.002013 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1373.919558 B =13227.476653 C =13909.686972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.097 3.903 3 N -0.320 5.320 4 N -0.327 5.327 5 C 0.121 3.879 6 C -0.128 4.128 7 C -0.101 4.101 8 C -0.116 4.116 9 C -0.096 4.096 10 C -0.139 4.139 11 C 0.119 3.881 12 C -0.101 4.101 13 C -0.260 4.260 14 C 0.147 3.853 15 O -0.354 6.354 16 C 0.467 3.533 17 O -0.543 6.543 18 C -0.095 4.095 19 C 0.039 3.961 20 C -0.542 4.542 21 H 0.076 0.924 22 C -0.005 4.005 23 N -0.935 5.935 24 Si 0.973 3.027 25 H -0.255 1.255 26 H -0.281 1.281 27 H -0.280 1.280 28 H 0.087 0.913 29 H 0.087 0.913 30 H 0.087 0.913 31 H 0.120 0.880 32 H 0.155 0.845 33 H 0.161 0.839 34 H 0.162 0.838 35 H 0.139 0.861 36 H 0.101 0.899 37 H 0.094 0.906 38 H 0.093 0.907 39 H 0.079 0.921 40 H 0.079 0.921 41 H 0.114 0.886 42 H 0.112 0.888 43 H -0.009 1.009 44 H -0.008 1.008 45 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.609 26.756 -8.046 32.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.070 4.070 3 N -0.140 5.140 4 N -0.102 5.102 5 C 0.030 3.970 6 C -0.148 4.148 7 C -0.120 4.120 8 C -0.134 4.134 9 C -0.114 4.114 10 C -0.159 4.159 11 C -0.007 4.007 12 C -0.159 4.159 13 C -0.271 4.271 14 C 0.073 3.927 15 O -0.271 6.271 16 C 0.312 3.688 17 O -0.433 6.433 18 C -0.132 4.132 19 C 0.002 3.998 20 C -0.580 4.580 21 H 0.094 0.906 22 C -0.203 4.203 23 N -0.575 5.575 24 Si 0.797 3.203 25 H -0.178 1.178 26 H -0.207 1.207 27 H -0.206 1.206 28 H 0.106 0.894 29 H 0.106 0.894 30 H 0.106 0.894 31 H 0.138 0.862 32 H 0.172 0.828 33 H 0.178 0.822 34 H 0.179 0.821 35 H 0.157 0.843 36 H 0.119 0.881 37 H 0.112 0.888 38 H 0.112 0.888 39 H 0.097 0.903 40 H 0.098 0.902 41 H 0.132 0.868 42 H 0.130 0.870 43 H 0.009 0.991 44 H 0.010 0.990 45 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 15.597 27.758 -8.420 32.935 hybrid contribution -0.720 -1.651 0.224 1.815 sum 14.878 26.107 -8.196 31.147 Atomic orbital electron populations 1.20363 0.84482 1.04442 1.04206 1.22812 0.98364 0.89647 0.96165 1.77414 0.86040 1.22777 1.27726 1.45810 1.04480 1.03756 1.56196 1.17878 0.84825 0.92906 1.01343 1.21110 1.00303 0.93856 0.99517 1.21402 0.91858 0.99820 0.98875 1.21704 0.98963 0.96781 0.95970 1.21431 0.97895 0.93695 0.98415 1.21358 0.92617 1.02403 0.99497 1.21481 0.97888 0.84140 0.97218 1.20852 0.92021 0.97984 1.05047 1.19391 0.92061 0.94630 1.21017 1.20984 1.01864 0.89635 0.80201 1.86621 1.78049 1.29753 1.32717 1.24416 0.71734 0.79204 0.93423 1.90626 1.48343 1.59588 1.44726 1.21508 1.05153 0.97702 0.88877 1.18794 0.94949 0.89858 0.96222 1.21673 1.45274 0.97993 0.93060 0.90589 1.26088 0.94930 0.97527 1.01704 1.70167 1.46776 1.08341 1.32202 0.85277 0.77645 0.78439 0.78912 1.17803 1.20660 1.20580 0.89412 0.89373 0.89435 0.86200 0.82775 0.82186 0.82080 0.84339 0.88071 0.88761 0.88808 0.90286 0.90232 0.86804 0.86950 0.99097 0.98997 0.92773 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.58 10.26 71.24 0.73 -0.85 16 2 C 0.10 2.61 7.22 43.11 0.31 2.92 16 3 N -0.32 -9.13 12.34 -47.33 -0.58 -9.71 16 4 N -0.33 -8.37 3.73 -176.00 -0.66 -9.02 16 5 C 0.12 2.52 6.28 38.09 0.24 2.76 16 6 C -0.13 -2.34 9.77 22.39 0.22 -2.12 16 7 C -0.10 -1.17 10.04 22.25 0.22 -0.95 16 8 C -0.12 -1.00 10.04 22.29 0.22 -0.78 16 9 C -0.10 -0.96 10.04 22.25 0.22 -0.74 16 10 C -0.14 -2.14 8.28 22.38 0.19 -1.95 16 11 C 0.12 2.89 6.76 41.36 0.28 3.17 16 12 C -0.10 -1.71 8.38 71.23 0.60 -1.11 16 13 C -0.26 -7.05 5.74 -20.13 -0.12 -7.16 16 14 C 0.15 4.21 5.54 71.23 0.39 4.60 16 15 O -0.35 -11.79 10.20 -51.41 -0.52 -12.31 16 16 C 0.47 18.42 7.96 71.24 0.57 18.99 16 17 O -0.54 -25.14 15.73 21.95 0.35 -24.80 16 18 C -0.10 -3.85 5.75 29.85 0.17 -3.68 16 19 C 0.04 2.11 4.26 29.85 0.13 2.24 16 20 C -0.54 -30.30 9.11 25.60 0.23 -30.07 16 21 H 0.08 3.90 7.74 -2.91 -0.02 3.88 16 22 C 0.00 -0.27 5.46 84.65 0.46 0.19 16 23 N -0.93 -58.04 13.29 21.45 0.28 -57.75 16 24 Si 0.97 43.77 29.54 68.60 2.03 45.80 16 25 H -0.25 -10.63 7.11 99.48 0.71 -9.92 16 26 H -0.28 -12.41 7.11 99.48 0.71 -11.71 16 27 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 28 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 29 H 0.09 1.55 8.14 -2.39 -0.02 1.54 16 30 H 0.09 1.67 7.25 -2.39 -0.02 1.65 16 31 H 0.12 2.38 8.06 -2.91 -0.02 2.36 16 32 H 0.15 0.98 8.06 -2.91 -0.02 0.96 16 33 H 0.16 0.39 8.06 -2.91 -0.02 0.37 16 34 H 0.16 0.68 8.06 -2.91 -0.02 0.66 16 35 H 0.14 1.91 6.09 -2.91 -0.02 1.89 16 36 H 0.10 1.49 7.74 -2.39 -0.02 1.47 16 37 H 0.09 1.53 7.15 -2.38 -0.02 1.51 16 38 H 0.09 1.25 6.89 -2.39 -0.02 1.23 16 39 H 0.08 2.21 7.25 -2.38 -0.02 2.20 16 40 H 0.08 2.16 7.14 -2.38 -0.02 2.14 16 41 H 0.11 4.10 8.14 -2.39 -0.02 4.09 16 42 H 0.11 4.10 8.14 -2.39 -0.02 4.08 16 43 H -0.01 -0.57 8.10 -2.38 -0.02 -0.59 16 44 H -0.01 -0.51 8.10 -2.39 -0.02 -0.53 16 45 H 0.26 15.28 8.31 -92.70 -0.77 14.51 16 Total: -1.00 -77.41 383.61 6.96 -70.45 By element: Atomic # 1 Polarization: 10.90 SS G_CDS: 1.00 Total: 11.89 kcal Atomic # 6 Polarization: -19.62 SS G_CDS: 5.07 Total: -14.54 kcal Atomic # 7 Polarization: -75.54 SS G_CDS: -0.96 Total: -76.49 kcal Atomic # 8 Polarization: -36.93 SS G_CDS: -0.18 Total: -37.11 kcal Atomic # 14 Polarization: 43.77 SS G_CDS: 2.03 Total: 45.80 kcal Total: -77.41 6.96 -70.45 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000812835075.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.953 kcal (2) G-P(sol) polarization free energy of solvation -77.411 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.959 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.451 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds