Wall clock time and date at job start Tue Mar 31 2020 15:15:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.36784 * 125.80081 * 2 1 4 4 C 1.47235 * 126.94451 * 359.97438 * 3 2 1 5 5 O 1.21633 * 120.00453 * 0.02562 * 4 3 2 6 6 N 1.34780 * 119.99888 * 179.97438 * 4 3 2 7 7 C 1.39861 * 119.99920 * 174.78968 * 6 4 3 8 8 C 1.38983 * 120.03638 * 326.28663 * 7 6 4 9 9 C 1.38155 * 120.06494 * 180.02562 * 8 7 6 10 10 C 1.38173 * 120.14089 * 359.70661 * 9 8 7 11 11 C 1.38913 * 120.07219 * 0.54263 * 10 9 8 12 12 O 1.35746 * 120.03250 * 179.74757 * 11 10 9 13 13 C 1.34838 * 116.99847 * 173.82423 * 12 11 10 14 14 H 1.07992 * 119.99994 * 354.60332 * 13 12 11 15 15 C 1.38655 * 119.99726 * 174.60862 * 13 12 11 16 16 N 1.31560 * 120.00314 * 359.97438 * 15 13 12 17 17 Si 1.86802 * 119.99692 * 179.97438 * 15 13 12 18 18 H 1.48498 * 109.47171 * 89.99499 * 17 15 13 19 19 H 1.48505 * 109.46967 * 209.99406 * 17 15 13 20 20 H 1.48498 * 109.46932 * 329.99527 * 17 15 13 21 21 C 1.38728 * 120.03946 * 146.30891 * 7 6 4 22 22 C 1.46694 * 106.11218 * 180.24166 * 3 2 1 23 23 C 1.34491 * 106.33327 * 359.56785 * 22 3 2 24 24 N 1.34664 * 125.80549 * 179.97438 * 2 1 3 25 25 C 1.46507 * 124.84676 * 0.03847 * 24 2 1 26 26 C 1.52995 * 109.47012 * 120.00461 * 25 24 2 27 27 C 1.53004 * 109.46855 * 240.00040 * 25 24 2 28 28 H 1.08998 * 109.47497 * 90.02147 * 1 2 3 29 29 H 1.08997 * 109.46861 * 210.02041 * 1 2 3 30 30 H 1.08998 * 109.47175 * 330.01850 * 1 2 3 31 31 H 0.97001 * 119.99851 * 354.78499 * 6 4 3 32 32 H 1.07997 * 119.96676 * 0.02562 * 8 7 6 33 33 H 1.08001 * 119.93092 * 179.97438 * 9 8 7 34 34 H 1.07997 * 119.96321 * 180.30084 * 10 9 8 35 35 H 0.96998 * 120.00218 * 180.02562 * 16 15 13 36 36 H 1.08000 * 120.06817 * 359.96340 * 21 7 6 37 37 H 1.08003 * 126.83170 * 179.74033 * 22 3 2 38 38 H 1.07993 * 125.56994 * 180.14088 * 23 22 3 39 39 H 1.08994 * 109.47691 * 0.02562 * 25 24 2 40 40 H 1.09001 * 109.47263 * 59.99764 * 26 25 24 41 41 H 1.09000 * 109.47294 * 179.97438 * 26 25 24 42 42 H 1.09003 * 109.47104 * 299.99931 * 26 25 24 43 43 H 1.09005 * 109.46953 * 60.00116 * 27 25 24 44 44 H 1.09000 * 109.47004 * 180.02562 * 27 25 24 45 45 H 1.09001 * 109.47337 * 300.00185 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3072 1.1094 0.0000 4 6 1.8704 2.5155 -0.0005 5 8 0.6841 2.7839 -0.0006 6 7 2.7853 3.5053 0.0001 7 6 2.3742 4.8375 -0.1104 8 6 1.2605 5.1607 -0.8766 9 6 0.8542 6.4765 -0.9865 10 6 1.5495 7.4745 -0.3308 11 6 2.6665 7.1586 0.4322 12 8 3.3520 8.1403 1.0719 13 6 4.3465 7.7547 1.8968 14 1 4.5099 6.7052 2.0919 15 6 5.1592 8.7058 2.4947 16 7 4.9603 9.9844 2.2568 17 14 6.5364 8.1717 3.6381 18 1 7.7794 7.9641 2.8526 19 1 6.7670 9.2238 4.6606 20 1 6.1578 6.9028 4.3101 21 6 3.0778 5.8380 0.5442 22 6 3.6883 0.6152 -0.0059 23 6 3.6097 -0.7274 0.0007 24 7 2.2948 -1.0921 0.0005 25 6 1.8095 -2.4745 0.0003 26 6 2.3218 -3.1947 -1.2485 27 6 2.3204 -3.1945 1.2499 28 1 -0.3634 -0.0004 -1.0276 29 1 -0.3633 -0.8898 0.5141 30 1 -0.3633 0.8901 0.5135 31 1 3.7287 3.2936 0.0772 32 1 0.7122 4.3824 -1.3864 33 1 -0.0112 6.7253 -1.5828 34 1 1.2265 8.5016 -0.4149 35 1 5.5290 10.6497 2.6748 36 1 3.9434 5.5895 1.1403 37 1 4.5891 1.2110 -0.0115 38 1 4.4498 -1.4059 0.0010 39 1 0.7195 -2.4769 -0.0008 40 1 3.4118 -3.1923 -1.2479 41 1 1.9611 -4.2232 -1.2485 42 1 1.9579 -2.6817 -2.1388 43 1 1.9554 -2.6813 2.1397 44 1 1.9597 -4.2231 1.2496 45 1 3.4104 -3.1921 1.2505 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000815038486.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:15:24 Heat of formation + Delta-G solvation = 7.807908 kcal Electronic energy + Delta-G solvation = -26897.803152 eV Core-core repulsion = 23074.881435 eV Total energy + Delta-G solvation = -3822.921717 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.68898 -39.73090 -38.40329 -36.31571 -35.56750 -34.06764 -32.17350 -31.76723 -30.35760 -29.12348 -28.36734 -27.86764 -26.46152 -25.23613 -23.46380 -22.52148 -21.70459 -21.11590 -19.47897 -18.90636 -17.84062 -17.58000 -17.21947 -16.16936 -15.57042 -15.41730 -14.99499 -14.97264 -14.61557 -14.28189 -13.95042 -13.87311 -13.73264 -13.48491 -13.34036 -13.15283 -12.95800 -12.92148 -12.77144 -12.55312 -12.48230 -12.26139 -11.77546 -11.65970 -11.65103 -11.56382 -11.46332 -11.02578 -10.93849 -10.66574 -10.38142 -9.75876 -9.43304 -9.30953 -8.77534 -8.73277 -8.29001 -7.58857 -7.04483 -6.38810 -3.98075 1.63694 2.17649 2.38158 2.49600 2.54664 3.16164 3.16704 3.21616 3.61604 3.73428 4.01542 4.05715 4.36449 4.42811 4.55076 4.69344 4.73636 4.94116 5.02653 5.04511 5.12763 5.13358 5.17981 5.27590 5.36202 5.41485 5.46880 5.54190 5.57418 5.75860 5.81872 5.88618 6.08858 6.10659 6.20929 6.38787 6.40706 6.64604 6.74216 6.92153 7.07456 7.11274 7.14111 7.24717 7.40975 7.51281 7.89776 7.96034 8.06243 8.59228 9.06951 9.78519 10.79487 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.015629 B = 0.002652 C = 0.002337 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1791.056779 B =10555.042057 C =11979.376832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C 0.107 3.893 3 C -0.234 4.234 4 C 0.590 3.410 5 O -0.533 6.533 6 N -0.666 5.666 7 C 0.186 3.814 8 C -0.204 4.204 9 C -0.064 4.064 10 C -0.203 4.203 11 C 0.168 3.832 12 O -0.178 6.178 13 C -0.390 4.390 14 H 0.090 0.910 15 C 0.039 3.961 16 N -0.864 5.864 17 Si 0.939 3.061 18 H -0.274 1.274 19 H -0.278 1.278 20 H -0.268 1.268 21 C -0.257 4.257 22 C -0.166 4.166 23 C -0.015 4.015 24 N -0.437 5.437 25 C 0.120 3.880 26 C -0.162 4.162 27 C -0.163 4.163 28 H 0.076 0.924 29 H 0.060 0.940 30 H 0.103 0.897 31 H 0.405 0.595 32 H 0.119 0.881 33 H 0.115 0.885 34 H 0.117 0.883 35 H 0.269 0.731 36 H 0.129 0.871 37 H 0.145 0.855 38 H 0.163 0.837 39 H 0.101 0.899 40 H 0.065 0.935 41 H 0.075 0.925 42 H 0.065 0.935 43 H 0.065 0.935 44 H 0.075 0.925 45 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.617 -27.451 -5.126 28.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.009 4.009 3 C -0.244 4.244 4 C 0.380 3.620 5 O -0.411 6.411 6 N -0.309 5.309 7 C 0.093 3.907 8 C -0.225 4.225 9 C -0.083 4.083 10 C -0.223 4.223 11 C 0.114 3.886 12 O -0.081 6.081 13 C -0.466 4.466 14 H 0.107 0.893 15 C -0.165 4.165 16 N -0.499 5.499 17 Si 0.764 3.236 18 H -0.199 1.199 19 H -0.203 1.203 20 H -0.193 1.193 21 C -0.279 4.279 22 C -0.190 4.190 23 C -0.141 4.141 24 N -0.114 5.114 25 C 0.018 3.982 26 C -0.220 4.220 27 C -0.221 4.221 28 H 0.095 0.905 29 H 0.079 0.921 30 H 0.122 0.878 31 H 0.240 0.760 32 H 0.137 0.863 33 H 0.133 0.867 34 H 0.135 0.865 35 H 0.079 0.921 36 H 0.147 0.853 37 H 0.163 0.837 38 H 0.180 0.820 39 H 0.119 0.881 40 H 0.084 0.916 41 H 0.094 0.906 42 H 0.084 0.916 43 H 0.084 0.916 44 H 0.094 0.906 45 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -4.453 -27.193 -5.055 28.015 hybrid contribution 1.499 -0.487 0.666 1.711 sum -2.954 -27.680 -4.389 28.181 Atomic orbital electron populations 1.20584 0.87215 1.04071 1.03337 1.20285 0.93690 0.85100 1.01859 1.20067 0.93312 0.91697 1.19316 1.17365 0.85326 0.83888 0.75438 1.90738 1.16472 1.84115 1.49760 1.43271 1.10293 1.04607 1.72717 1.17404 0.95803 0.81930 0.95565 1.20554 1.00400 0.96419 1.05159 1.20521 0.98057 0.91952 0.97740 1.20226 0.97681 0.99593 1.04755 1.19082 0.91168 0.87644 0.90704 1.84016 1.42750 1.29869 1.51511 1.21273 1.09044 0.94079 1.22230 0.89281 1.25261 0.98273 0.94765 0.98225 1.70039 1.38034 0.99906 1.41946 0.85743 0.80120 0.78499 0.79253 1.19944 1.20305 1.19254 1.20827 1.06035 0.92491 1.08534 1.22033 0.95794 0.93580 1.07634 1.21507 0.85641 0.95910 1.11015 1.43831 1.05859 1.05450 1.56273 1.21515 1.00503 0.79242 0.96957 1.22167 1.02369 1.00708 0.96754 1.22177 1.02405 1.00724 0.96782 0.90533 0.92140 0.87846 0.75951 0.86302 0.86718 0.86488 0.92113 0.85328 0.83695 0.81963 0.88101 0.91592 0.90605 0.91631 0.91603 0.90601 0.91574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.98 9.34 36.01 0.34 -0.64 16 2 C 0.11 1.27 6.89 -81.88 -0.56 0.70 16 3 C -0.23 -3.25 6.29 -103.36 -0.65 -3.90 16 4 C 0.59 10.05 7.54 -12.60 -0.10 9.95 16 5 O -0.53 -10.37 12.52 5.25 0.07 -10.30 16 6 N -0.67 -11.38 5.33 -10.90 -0.06 -11.44 16 7 C 0.19 3.81 6.27 -83.74 -0.52 3.29 16 8 C -0.20 -4.15 8.65 -39.34 -0.34 -4.49 16 9 C -0.06 -1.26 10.03 -39.64 -0.40 -1.66 16 10 C -0.20 -4.52 9.99 -39.36 -0.39 -4.91 16 11 C 0.17 4.22 6.64 -39.13 -0.26 3.96 16 12 O -0.18 -5.18 9.76 0.04 0.00 -5.18 16 13 C -0.39 -11.06 9.44 30.89 0.29 -10.77 16 14 H 0.09 2.35 5.30 -52.49 -0.28 2.07 16 15 C 0.04 1.08 5.49 -17.51 -0.10 0.98 16 16 N -0.86 -25.66 13.67 55.48 0.76 -24.90 16 17 Si 0.94 20.75 29.55 -169.99 -5.02 15.73 16 18 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 19 H -0.28 -6.03 7.11 56.52 0.40 -5.62 16 20 H -0.27 -5.71 7.11 56.52 0.40 -5.31 16 21 C -0.26 -5.84 9.05 -39.20 -0.35 -6.20 16 22 C -0.17 -1.87 10.56 -37.49 -0.40 -2.26 16 23 C -0.01 -0.14 10.17 -16.82 -0.17 -0.31 16 24 N -0.44 -3.98 2.57 -105.46 -0.27 -4.25 16 25 C 0.12 0.70 3.45 -67.93 -0.23 0.46 16 26 C -0.16 -0.74 9.22 37.16 0.34 -0.40 16 27 C -0.16 -0.77 9.23 37.16 0.34 -0.43 16 28 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.06 0.46 6.96 -51.93 -0.36 0.10 16 30 H 0.10 1.32 6.47 -51.93 -0.34 0.98 16 31 H 0.41 5.80 7.96 -40.82 -0.32 5.47 16 32 H 0.12 2.36 6.43 -52.49 -0.34 2.02 16 33 H 0.11 1.88 8.06 -52.49 -0.42 1.46 16 34 H 0.12 2.48 8.06 -52.49 -0.42 2.06 16 35 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 36 H 0.13 2.87 5.71 -52.49 -0.30 2.57 16 37 H 0.15 1.38 7.71 -52.48 -0.40 0.98 16 38 H 0.16 1.02 8.06 -52.49 -0.42 0.60 16 39 H 0.10 0.52 6.47 -51.93 -0.34 0.18 16 40 H 0.07 0.30 7.88 -51.93 -0.41 -0.11 16 41 H 0.08 0.22 8.14 -51.93 -0.42 -0.21 16 42 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 43 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 44 H 0.08 0.23 8.14 -51.93 -0.42 -0.20 16 45 H 0.07 0.31 7.88 -51.93 -0.41 -0.10 16 LS Contribution 374.93 15.07 5.65 5.65 Total: -1.00 -34.57 374.93 -8.05 -42.62 By element: Atomic # 1 Polarization: 14.69 SS G_CDS: -6.01 Total: 8.68 kcal Atomic # 6 Polarization: -13.45 SS G_CDS: -3.16 Total: -16.61 kcal Atomic # 7 Polarization: -41.02 SS G_CDS: 0.43 Total: -40.59 kcal Atomic # 8 Polarization: -15.55 SS G_CDS: 0.07 Total: -15.48 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.02 Total: 15.73 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -34.57 -8.05 -42.62 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815038486.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.431 kcal (2) G-P(sol) polarization free energy of solvation -34.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.863 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.055 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.624 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.808 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds