Wall clock time and date at job start Tue Mar 31 2020 15:15:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.36784 * 125.80081 * 2 1 4 4 C 1.47235 * 126.94451 * 359.97438 * 3 2 1 5 5 O 1.21633 * 120.00453 * 0.02562 * 4 3 2 6 6 N 1.34780 * 119.99888 * 179.97438 * 4 3 2 7 7 C 1.39861 * 119.99920 * 174.78968 * 6 4 3 8 8 C 1.38983 * 120.03638 * 326.28663 * 7 6 4 9 9 C 1.38155 * 120.06494 * 180.02562 * 8 7 6 10 10 C 1.38173 * 120.14089 * 359.70661 * 9 8 7 11 11 C 1.38913 * 120.07219 * 0.54263 * 10 9 8 12 12 O 1.35746 * 120.03250 * 179.74757 * 11 10 9 13 13 C 1.34838 * 116.99847 * 173.82423 * 12 11 10 14 14 H 1.07992 * 119.99994 * 354.60332 * 13 12 11 15 15 C 1.38655 * 119.99726 * 174.60862 * 13 12 11 16 16 N 1.31560 * 120.00314 * 359.97438 * 15 13 12 17 17 Si 1.86802 * 119.99692 * 179.97438 * 15 13 12 18 18 H 1.48498 * 109.47171 * 89.99499 * 17 15 13 19 19 H 1.48505 * 109.46967 * 209.99406 * 17 15 13 20 20 H 1.48498 * 109.46932 * 329.99527 * 17 15 13 21 21 C 1.38728 * 120.03946 * 146.30891 * 7 6 4 22 22 C 1.46694 * 106.11218 * 180.24166 * 3 2 1 23 23 C 1.34491 * 106.33327 * 359.56785 * 22 3 2 24 24 N 1.34664 * 125.80549 * 179.97438 * 2 1 3 25 25 C 1.46507 * 124.84676 * 0.03847 * 24 2 1 26 26 C 1.52995 * 109.47012 * 120.00461 * 25 24 2 27 27 C 1.53004 * 109.46855 * 240.00040 * 25 24 2 28 28 H 1.08998 * 109.47497 * 90.02147 * 1 2 3 29 29 H 1.08997 * 109.46861 * 210.02041 * 1 2 3 30 30 H 1.08998 * 109.47175 * 330.01850 * 1 2 3 31 31 H 0.97001 * 119.99851 * 354.78499 * 6 4 3 32 32 H 1.07997 * 119.96676 * 0.02562 * 8 7 6 33 33 H 1.08001 * 119.93092 * 179.97438 * 9 8 7 34 34 H 1.07997 * 119.96321 * 180.30084 * 10 9 8 35 35 H 0.96998 * 120.00218 * 180.02562 * 16 15 13 36 36 H 1.08000 * 120.06817 * 359.96340 * 21 7 6 37 37 H 1.08003 * 126.83170 * 179.74033 * 22 3 2 38 38 H 1.07993 * 125.56994 * 180.14088 * 23 22 3 39 39 H 1.08994 * 109.47691 * 0.02562 * 25 24 2 40 40 H 1.09001 * 109.47263 * 59.99764 * 26 25 24 41 41 H 1.09000 * 109.47294 * 179.97438 * 26 25 24 42 42 H 1.09003 * 109.47104 * 299.99931 * 26 25 24 43 43 H 1.09005 * 109.46953 * 60.00116 * 27 25 24 44 44 H 1.09000 * 109.47004 * 180.02562 * 27 25 24 45 45 H 1.09001 * 109.47337 * 300.00185 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3072 1.1094 0.0000 4 6 1.8704 2.5155 -0.0005 5 8 0.6841 2.7839 -0.0006 6 7 2.7853 3.5053 0.0001 7 6 2.3742 4.8375 -0.1104 8 6 1.2605 5.1607 -0.8766 9 6 0.8542 6.4765 -0.9865 10 6 1.5495 7.4745 -0.3308 11 6 2.6665 7.1586 0.4322 12 8 3.3520 8.1403 1.0719 13 6 4.3465 7.7547 1.8968 14 1 4.5099 6.7052 2.0919 15 6 5.1592 8.7058 2.4947 16 7 4.9603 9.9844 2.2568 17 14 6.5364 8.1717 3.6381 18 1 7.7794 7.9641 2.8526 19 1 6.7670 9.2238 4.6606 20 1 6.1578 6.9028 4.3101 21 6 3.0778 5.8380 0.5442 22 6 3.6883 0.6152 -0.0059 23 6 3.6097 -0.7274 0.0007 24 7 2.2948 -1.0921 0.0005 25 6 1.8095 -2.4745 0.0003 26 6 2.3218 -3.1947 -1.2485 27 6 2.3204 -3.1945 1.2499 28 1 -0.3634 -0.0004 -1.0276 29 1 -0.3633 -0.8898 0.5141 30 1 -0.3633 0.8901 0.5135 31 1 3.7287 3.2936 0.0772 32 1 0.7122 4.3824 -1.3864 33 1 -0.0112 6.7253 -1.5828 34 1 1.2265 8.5016 -0.4149 35 1 5.5290 10.6497 2.6748 36 1 3.9434 5.5895 1.1403 37 1 4.5891 1.2110 -0.0115 38 1 4.4498 -1.4059 0.0010 39 1 0.7195 -2.4769 -0.0008 40 1 3.4118 -3.1923 -1.2479 41 1 1.9611 -4.2232 -1.2485 42 1 1.9579 -2.6817 -2.1388 43 1 1.9554 -2.6813 2.1397 44 1 1.9597 -4.2231 1.2496 45 1 3.4104 -3.1921 1.2505 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000815038486.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:15:23 Heat of formation + Delta-G solvation = -12.840318 kcal Electronic energy + Delta-G solvation = -26898.698526 eV Core-core repulsion = 23074.881435 eV Total energy + Delta-G solvation = -3823.817091 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.51357 -41.26326 -40.10849 -38.04053 -36.16277 -35.59090 -34.22109 -32.59984 -31.44898 -30.72002 -29.89070 -28.19532 -27.49570 -27.16498 -24.61594 -23.49566 -23.18892 -22.52596 -20.86629 -19.76705 -19.65304 -19.00949 -18.27488 -17.30836 -17.00893 -16.79524 -16.45704 -16.10891 -15.96014 -15.60400 -15.50163 -15.29971 -14.95990 -14.53877 -14.46104 -14.18353 -14.07703 -13.97781 -13.62971 -13.54476 -13.39129 -13.22781 -13.06558 -12.95825 -12.72083 -12.67411 -12.46488 -12.38664 -12.20939 -12.10480 -11.96556 -11.47976 -11.20998 -10.85817 -10.66399 -9.62671 -9.33240 -9.13377 -8.81099 -8.45566 -6.14196 0.32439 0.68956 0.88055 1.36008 1.45425 1.51191 1.53669 1.76457 2.18744 2.32027 2.49422 2.86878 3.19092 3.50406 3.62592 3.76375 3.91746 3.97028 4.04444 4.10992 4.19037 4.32837 4.35331 4.47083 4.53623 4.65357 4.66406 4.68624 4.77503 4.80009 4.82463 4.85642 4.94937 5.03478 5.05477 5.12189 5.23090 5.24229 5.26339 5.44921 5.53176 5.68426 5.69412 5.77411 6.02888 6.11026 6.20664 6.36941 6.58807 6.98730 7.24569 7.78296 8.77479 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.015629 B = 0.002652 C = 0.002337 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1791.056779 B =10555.042057 C =11979.376832 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C 0.105 3.895 3 C -0.271 4.271 4 C 0.586 3.414 5 O -0.564 6.564 6 N -0.662 5.662 7 C 0.191 3.809 8 C -0.200 4.200 9 C -0.050 4.050 10 C -0.215 4.215 11 C 0.135 3.865 12 O -0.225 6.225 13 C -0.413 4.413 14 H 0.099 0.901 15 C -0.022 4.022 16 N -0.919 5.919 17 Si 1.018 2.982 18 H -0.260 1.260 19 H -0.271 1.271 20 H -0.255 1.255 21 C -0.263 4.263 22 C -0.184 4.184 23 C -0.001 4.001 24 N -0.429 5.429 25 C 0.112 3.888 26 C -0.158 4.158 27 C -0.159 4.159 28 H 0.082 0.918 29 H 0.089 0.911 30 H 0.075 0.925 31 H 0.418 0.582 32 H 0.129 0.871 33 H 0.156 0.844 34 H 0.121 0.879 35 H 0.273 0.727 36 H 0.127 0.873 37 H 0.156 0.844 38 H 0.197 0.803 39 H 0.109 0.891 40 H 0.068 0.932 41 H 0.097 0.903 42 H 0.053 0.947 43 H 0.051 0.949 44 H 0.097 0.903 45 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.223 -31.650 -5.366 32.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.014 4.014 3 C -0.281 4.281 4 C 0.379 3.621 5 O -0.444 6.444 6 N -0.306 5.306 7 C 0.096 3.904 8 C -0.220 4.220 9 C -0.069 4.069 10 C -0.234 4.234 11 C 0.084 3.916 12 O -0.131 6.131 13 C -0.489 4.489 14 H 0.117 0.883 15 C -0.219 4.219 16 N -0.557 5.557 17 Si 0.837 3.163 18 H -0.185 1.185 19 H -0.196 1.196 20 H -0.179 1.179 21 C -0.284 4.284 22 C -0.208 4.208 23 C -0.128 4.128 24 N -0.105 5.105 25 C 0.012 3.988 26 C -0.216 4.216 27 C -0.217 4.217 28 H 0.101 0.899 29 H 0.107 0.893 30 H 0.094 0.906 31 H 0.255 0.745 32 H 0.147 0.853 33 H 0.173 0.827 34 H 0.139 0.861 35 H 0.082 0.918 36 H 0.144 0.856 37 H 0.173 0.827 38 H 0.214 0.786 39 H 0.127 0.873 40 H 0.087 0.913 41 H 0.116 0.884 42 H 0.072 0.928 43 H 0.070 0.930 44 H 0.116 0.884 45 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -4.063 -31.469 -5.323 32.173 hybrid contribution 1.179 0.555 0.588 1.429 sum -2.884 -30.914 -4.735 31.407 Atomic orbital electron populations 1.20547 0.86544 1.04099 1.03727 1.20467 0.94371 0.85551 1.00976 1.19981 0.95304 0.90272 1.22572 1.17897 0.84793 0.85014 0.74349 1.90707 1.17650 1.84751 1.51319 1.43273 1.11270 1.03342 1.72676 1.17480 0.95327 0.83099 0.94472 1.20854 0.99944 0.96953 1.04297 1.20921 0.98362 0.90959 0.96612 1.20472 0.97362 1.00674 1.04929 1.19599 0.92081 0.88195 0.91766 1.83980 1.44147 1.31753 1.53267 1.21773 1.09352 0.94913 1.22877 0.88333 1.26579 1.00904 0.94605 0.99824 1.70184 1.39970 1.01427 1.44112 0.84598 0.76350 0.78519 0.76810 1.18507 1.19620 1.17863 1.20835 1.06388 0.92268 1.08941 1.22244 0.95054 0.94740 1.08718 1.22008 0.86455 0.95703 1.08591 1.44127 1.05648 1.06210 1.54467 1.21863 1.01209 0.77450 0.98296 1.22154 1.02562 1.01544 0.95300 1.22169 1.02598 1.01584 0.95351 0.89901 0.89266 0.90611 0.74488 0.85311 0.82677 0.86090 0.91805 0.85573 0.82675 0.78647 0.87272 0.91262 0.88433 0.92811 0.92965 0.88401 0.91258 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.78 9.34 71.24 0.67 -1.12 16 2 C 0.11 2.33 6.89 41.78 0.29 2.62 16 3 C -0.27 -7.32 6.29 -19.04 -0.12 -7.44 16 4 C 0.59 19.94 7.54 86.61 0.65 20.59 16 5 O -0.56 -22.04 12.52 -4.14 -0.05 -22.09 16 6 N -0.66 -22.57 5.33 -306.64 -1.63 -24.20 16 7 C 0.19 7.84 6.27 38.16 0.24 8.08 16 8 C -0.20 -7.94 8.65 22.43 0.19 -7.75 16 9 C -0.05 -1.92 10.03 22.23 0.22 -1.70 16 10 C -0.21 -9.74 9.99 22.42 0.22 -9.52 16 11 C 0.13 7.04 6.64 22.56 0.15 7.19 16 12 O -0.23 -13.84 9.76 -22.78 -0.22 -14.06 16 13 C -0.41 -24.43 9.44 67.92 0.64 -23.79 16 14 H 0.10 5.38 5.30 -2.91 -0.02 5.36 16 15 C -0.02 -1.23 5.49 84.83 0.47 -0.77 16 16 N -0.92 -56.87 13.67 21.61 0.30 -56.58 16 17 Si 1.02 43.20 29.55 68.60 2.03 45.22 16 18 H -0.26 -10.38 7.11 99.48 0.71 -9.67 16 19 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16 20 H -0.25 -10.12 7.11 99.48 0.71 -9.41 16 21 C -0.26 -12.27 9.05 22.52 0.20 -12.06 16 22 C -0.18 -3.83 10.56 23.62 0.25 -3.58 16 23 C 0.00 -0.02 10.17 83.12 0.85 0.82 16 24 N -0.43 -6.67 2.57 -487.55 -1.25 -7.92 16 25 C 0.11 0.93 3.45 44.99 0.16 1.08 16 26 C -0.16 -0.87 9.22 71.98 0.66 -0.21 16 27 C -0.16 -0.94 9.23 71.98 0.66 -0.28 16 28 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 29 H 0.09 1.15 6.96 -2.39 -0.02 1.13 16 30 H 0.08 1.94 6.47 -2.39 -0.02 1.92 16 31 H 0.42 11.88 7.96 -92.71 -0.74 11.15 16 32 H 0.13 4.94 6.43 -2.91 -0.02 4.93 16 33 H 0.16 4.66 8.06 -2.91 -0.02 4.64 16 34 H 0.12 5.28 8.06 -2.91 -0.02 5.26 16 35 H 0.27 15.44 8.31 -92.71 -0.77 14.67 16 36 H 0.13 5.83 5.71 -2.91 -0.02 5.82 16 37 H 0.16 2.73 7.71 -2.91 -0.02 2.70 16 38 H 0.20 1.63 8.06 -2.91 -0.02 1.60 16 39 H 0.11 0.74 6.47 -2.39 -0.02 0.72 16 40 H 0.07 0.36 7.88 -2.39 -0.02 0.34 16 41 H 0.10 0.15 8.14 -2.39 -0.02 0.13 16 42 H 0.05 0.45 8.14 -2.39 -0.02 0.43 16 43 H 0.05 0.47 8.14 -2.38 -0.02 0.45 16 44 H 0.10 0.18 8.14 -2.39 -0.02 0.16 16 45 H 0.07 0.38 7.88 -2.39 -0.02 0.37 16 Total: -1.00 -79.53 374.93 5.86 -73.67 By element: Atomic # 1 Polarization: 33.48 SS G_CDS: 0.29 Total: 33.77 kcal Atomic # 6 Polarization: -34.22 SS G_CDS: 6.41 Total: -27.81 kcal Atomic # 7 Polarization: -86.11 SS G_CDS: -2.59 Total: -88.70 kcal Atomic # 8 Polarization: -35.88 SS G_CDS: -0.27 Total: -36.16 kcal Atomic # 14 Polarization: 43.20 SS G_CDS: 2.03 Total: 45.22 kcal Total: -79.53 5.86 -73.67 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000815038486.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.830 kcal (2) G-P(sol) polarization free energy of solvation -79.526 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.670 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds