Wall clock time and date at job start Tue Mar 31 2020 15:33:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.35343 * 126.37579 * 2 1 4 4 C 1.41553 * 105.50187 * 180.09269 * 3 2 1 5 5 C 1.47582 * 126.52450 * 179.87509 * 4 3 2 6 6 O 1.21491 * 119.99753 * 359.71915 * 5 4 3 7 7 O 1.34726 * 119.99938 * 179.71409 * 5 4 3 8 8 C 1.45203 * 117.00112 * 180.02562 * 7 5 4 9 9 C 1.50697 * 109.47319 * 179.97438 * 8 7 5 10 10 C 1.38633 * 119.74949 * 269.72858 * 9 8 7 11 11 C 1.37619 * 120.24729 * 179.71954 * 10 9 8 12 12 C 1.40721 * 119.74248 * 0.57052 * 11 10 9 13 13 C 1.41402 * 120.24105 * 179.68297 * 12 11 10 14 14 H 1.07999 * 119.99551 * 204.40991 * 13 12 11 15 15 C 1.39940 * 120.00012 * 24.40252 * 13 12 11 16 16 N 1.30825 * 120.00049 * 17.85251 * 15 13 12 17 17 Si 1.86804 * 119.99952 * 197.84801 * 15 13 12 18 18 H 1.48499 * 109.46965 * 90.00080 * 17 15 13 19 19 H 1.48502 * 109.47012 * 210.00137 * 17 15 13 20 20 H 1.48498 * 109.46903 * 330.00249 * 17 15 13 21 21 C 1.40705 * 119.51384 * 359.70257 * 12 11 10 22 22 C 1.37618 * 119.74473 * 359.97438 * 21 12 11 23 23 N 1.31854 * 106.94996 * 359.62112 * 4 3 2 24 24 N 1.28465 * 110.06359 * 0.23580 * 23 4 3 25 25 C 1.46501 * 124.88174 * 179.97438 * 24 23 4 26 26 C 1.53001 * 109.47306 * 300.02797 * 25 24 23 27 27 C 1.53002 * 109.46939 * 60.02506 * 25 24 23 28 28 H 1.09003 * 109.47172 * 270.33521 * 1 2 3 29 29 H 1.08994 * 109.47562 * 30.34497 * 1 2 3 30 30 H 1.09005 * 109.46763 * 150.34336 * 1 2 3 31 31 H 1.08000 * 127.25517 * 359.97199 * 3 2 1 32 32 H 1.08994 * 109.46995 * 59.99718 * 8 7 5 33 33 H 1.08996 * 109.46641 * 299.99939 * 8 7 5 34 34 H 1.07997 * 119.87819 * 359.97438 * 10 9 8 35 35 H 1.07997 * 120.12883 * 180.27640 * 11 10 9 36 36 H 0.97006 * 119.99615 * 179.97438 * 16 15 13 37 37 H 1.07994 * 120.13097 * 179.97438 * 21 12 11 38 38 H 1.08005 * 119.87795 * 180.02562 * 22 21 12 39 39 H 1.09005 * 109.47559 * 180.02562 * 25 24 23 40 40 H 1.09002 * 109.46910 * 299.99904 * 26 25 24 41 41 H 1.09005 * 109.47080 * 59.99377 * 26 25 24 42 42 H 1.08999 * 109.47141 * 179.97438 * 26 25 24 43 43 H 1.08997 * 109.47097 * 60.00135 * 27 25 24 44 44 H 1.08999 * 109.47098 * 179.97438 * 27 25 24 45 45 H 1.09001 * 109.47360 * 300.00051 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3097 1.0897 0.0000 4 6 3.6323 0.5853 -0.0022 5 6 4.8756 1.3805 -0.0056 6 8 4.8204 2.5941 -0.0120 7 8 6.0717 0.7605 -0.0016 8 6 7.2524 1.6058 -0.0048 9 6 8.4879 0.7430 0.0010 10 6 9.0539 0.3602 1.2073 11 6 10.1789 -0.4323 1.2246 12 6 10.7615 -0.8441 0.0117 13 6 11.9213 -1.6529 0.0172 14 1 12.5863 -1.6492 -0.8338 15 6 12.2077 -2.4581 1.1254 16 7 11.2667 -2.7405 1.9893 17 14 13.9334 -3.1296 1.3711 18 1 14.7286 -2.1683 2.1766 19 1 13.8615 -4.4311 2.0827 20 1 14.5820 -3.3232 0.0494 21 6 10.1817 -0.4448 -1.2066 22 6 9.0529 0.3424 -1.1999 23 7 3.5421 -0.7301 0.0050 24 7 2.3081 -1.0872 0.0064 25 6 1.8374 -2.4745 0.0133 26 6 2.3575 -3.1958 -1.2318 27 6 2.3557 -3.1827 1.2666 28 1 -0.3634 0.0060 1.0277 29 1 -0.3634 0.8868 -0.5191 30 1 -0.3633 -0.8931 -0.5085 31 1 2.0053 2.1259 -0.0004 32 1 7.2479 2.2394 0.8820 33 1 7.2494 2.2307 -0.8979 34 1 8.6080 0.6817 2.1369 35 1 10.6156 -0.7331 2.1655 36 1 11.4651 -3.2990 2.7573 37 1 10.6209 -0.7547 -2.1432 38 1 8.6059 0.6498 -2.1338 39 1 0.7475 -2.4885 0.0125 40 1 1.9883 -2.6913 -2.1247 41 1 3.4475 -3.1818 -1.2311 42 1 2.0077 -4.2281 -1.2264 43 1 1.9851 -2.6689 2.1536 44 1 2.0051 -4.2147 1.2720 45 1 3.4456 -3.1688 1.2674 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000835273902.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:33:12 Heat of formation + Delta-G solvation = -1.458058 kcal Electronic energy + Delta-G solvation = -26703.043529 eV Core-core repulsion = 22879.720010 eV Total energy + Delta-G solvation = -3823.323519 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.84895 -39.69733 -37.59911 -36.10905 -35.75884 -33.81184 -32.98439 -30.98089 -30.50226 -29.30615 -27.64671 -27.46481 -27.06633 -25.07222 -23.48764 -21.78871 -21.05129 -20.99757 -19.98806 -19.38951 -17.34122 -17.27690 -16.79737 -16.36423 -15.99737 -15.60535 -15.26008 -15.09768 -14.31756 -13.98212 -13.78617 -13.68882 -13.57138 -13.44207 -13.06741 -12.97662 -12.66642 -12.52161 -12.27717 -12.25063 -12.23980 -11.96415 -11.70288 -11.68241 -11.52892 -11.15993 -10.95053 -10.81134 -10.73717 -10.43538 -10.30601 -10.04284 -9.63980 -9.41124 -9.22366 -9.17936 -9.02396 -7.50139 -7.39039 -6.81693 -4.41467 1.51761 1.94616 2.19232 2.55004 3.00621 3.04789 3.07984 3.08380 3.39546 3.46793 3.89118 4.06818 4.35891 4.48271 4.54019 4.58114 4.66393 4.85608 5.14085 5.21298 5.22053 5.32766 5.40206 5.45334 5.46411 5.54915 5.68644 5.74841 5.75975 5.80442 5.84725 5.89484 6.12619 6.32428 6.33693 6.38110 6.67668 6.88881 6.93407 7.02405 7.24551 7.32549 7.57623 7.79101 7.83489 8.01082 8.07729 8.24545 8.24967 8.59331 8.83729 8.92481 10.12056 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.014809 B = 0.002596 C = 0.002328 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1890.295520 B =10784.931326 C =12026.479078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.002 3.998 3 C -0.177 4.177 4 C -0.003 4.003 5 C 0.548 3.452 6 O -0.514 6.514 7 O -0.334 6.334 8 C 0.135 3.865 9 C -0.232 4.232 10 C -0.075 4.075 11 C -0.170 4.170 12 C 0.118 3.882 13 C -0.457 4.457 14 H 0.080 0.920 15 C 0.075 3.925 16 N -0.785 5.785 17 Si 0.910 3.090 18 H -0.267 1.267 19 H -0.277 1.277 20 H -0.261 1.261 21 C -0.230 4.230 22 C -0.063 4.063 23 N -0.221 5.221 24 N -0.273 5.273 25 C 0.142 3.858 26 C -0.166 4.166 27 C -0.165 4.165 28 H 0.078 0.922 29 H 0.086 0.914 30 H 0.069 0.931 31 H 0.162 0.838 32 H 0.063 0.937 33 H 0.062 0.938 34 H 0.089 0.911 35 H 0.120 0.880 36 H 0.282 0.718 37 H 0.094 0.906 38 H 0.089 0.911 39 H 0.108 0.892 40 H 0.062 0.938 41 H 0.079 0.921 42 H 0.080 0.920 43 H 0.062 0.938 44 H 0.080 0.920 45 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.737 -0.897 -1.509 20.811 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.121 4.121 3 C -0.204 4.204 4 C -0.160 4.160 5 C 0.391 3.609 6 O -0.402 6.402 7 O -0.249 6.249 8 C 0.063 3.937 9 C -0.233 4.233 10 C -0.093 4.093 11 C -0.190 4.190 12 C 0.116 3.884 13 C -0.486 4.486 14 H 0.098 0.902 15 C -0.144 4.144 16 N -0.410 5.410 17 Si 0.734 3.266 18 H -0.192 1.192 19 H -0.203 1.203 20 H -0.185 1.185 21 C -0.249 4.249 22 C -0.081 4.081 23 N -0.057 5.057 24 N -0.064 5.064 25 C 0.042 3.958 26 C -0.223 4.223 27 C -0.223 4.223 28 H 0.096 0.904 29 H 0.104 0.896 30 H 0.088 0.912 31 H 0.180 0.820 32 H 0.081 0.919 33 H 0.080 0.920 34 H 0.107 0.893 35 H 0.137 0.863 36 H 0.093 0.907 37 H 0.112 0.888 38 H 0.107 0.893 39 H 0.126 0.874 40 H 0.081 0.919 41 H 0.098 0.902 42 H 0.099 0.901 43 H 0.081 0.919 44 H 0.099 0.901 45 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -20.117 -1.768 -1.291 20.236 hybrid contribution 0.267 0.397 0.191 0.515 sum -19.851 -1.370 -1.100 19.928 Atomic orbital electron populations 1.20337 0.86714 1.03742 1.03230 1.21393 0.95448 0.86709 1.08547 1.21456 0.90012 0.99605 1.09341 1.20908 0.92707 0.89807 1.12616 1.19665 0.83300 0.85269 0.72674 1.90803 1.88056 1.14194 1.47178 1.86870 1.13915 1.41933 1.82156 1.21785 0.79860 0.91095 1.00984 1.18677 0.98280 1.12258 0.94126 1.20544 0.96340 0.97355 0.95080 1.21288 0.98147 1.00701 0.98832 1.17682 0.91071 0.88743 0.90945 1.19671 1.06598 1.20554 1.01780 0.90200 1.25967 0.98613 0.94992 0.94828 1.69843 1.33058 1.27531 1.10577 0.86281 0.82244 0.78453 0.79585 1.19175 1.20258 1.18540 1.20951 0.99507 1.07393 0.97092 1.20395 0.95752 0.96741 0.95241 1.73752 1.01184 1.14559 1.16228 1.45862 1.02796 1.07243 1.50487 1.21667 0.99519 0.76140 0.98466 1.22183 1.03993 1.00462 0.95692 1.22177 1.04009 1.00541 0.95579 0.90382 0.89558 0.91242 0.82011 0.91907 0.91961 0.89318 0.86256 0.90704 0.88756 0.89296 0.87433 0.91883 0.90212 0.90149 0.91865 0.90147 0.90187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.48 9.92 36.01 0.36 -0.12 16 2 C 0.00 0.02 6.92 -82.21 -0.57 -0.55 16 3 C -0.18 -2.35 10.73 -39.35 -0.42 -2.77 16 4 C 0.00 -0.05 7.17 -82.78 -0.59 -0.64 16 5 C 0.55 10.59 7.97 34.54 0.28 10.87 16 6 O -0.51 -10.36 16.72 -19.26 -0.32 -10.68 16 7 O -0.33 -7.06 10.21 -40.56 -0.41 -7.48 16 8 C 0.13 2.77 5.59 36.00 0.20 2.97 16 9 C -0.23 -5.39 5.54 -104.33 -0.58 -5.97 16 10 C -0.07 -1.81 9.67 -39.66 -0.38 -2.20 16 11 C -0.17 -4.50 8.70 -38.87 -0.34 -4.84 16 12 C 0.12 3.18 5.58 -106.82 -0.60 2.59 16 13 C -0.46 -12.10 9.05 -37.74 -0.34 -12.44 16 14 H 0.08 2.02 7.91 -52.49 -0.42 1.61 16 15 C 0.07 1.87 5.14 -17.34 -0.09 1.78 16 16 N -0.79 -20.27 10.95 55.55 0.61 -19.66 16 17 Si 0.91 18.49 29.60 -169.99 -5.03 13.46 16 18 H -0.27 -5.35 7.11 56.52 0.40 -4.95 16 19 H -0.28 -5.50 7.11 56.52 0.40 -5.10 16 20 H -0.26 -5.24 7.11 56.52 0.40 -4.84 16 21 C -0.23 -5.75 9.80 -38.88 -0.38 -6.13 16 22 C -0.06 -1.47 9.67 -39.66 -0.38 -1.85 16 23 N -0.22 -3.57 11.65 33.41 0.39 -3.18 16 24 N -0.27 -3.27 3.04 -50.66 -0.15 -3.43 16 25 C 0.14 1.17 3.55 -67.93 -0.24 0.93 16 26 C -0.17 -1.34 9.37 37.16 0.35 -0.99 16 27 C -0.17 -1.36 9.37 37.16 0.35 -1.01 16 28 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.07 0.29 7.02 -51.93 -0.36 -0.08 16 31 H 0.16 1.87 8.06 -52.49 -0.42 1.45 16 32 H 0.06 1.22 8.07 -51.93 -0.42 0.80 16 33 H 0.06 1.20 8.08 -51.93 -0.42 0.78 16 34 H 0.09 1.97 8.06 -52.49 -0.42 1.55 16 35 H 0.12 3.22 6.16 -52.49 -0.32 2.90 16 36 H 0.28 6.59 8.30 -40.82 -0.34 6.25 16 37 H 0.09 2.20 8.06 -52.49 -0.42 1.78 16 38 H 0.09 1.85 8.06 -52.48 -0.42 1.43 16 39 H 0.11 0.54 6.55 -51.93 -0.34 0.20 16 40 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 42 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 43 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 44 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 45 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 LS Contribution 386.64 15.07 5.83 5.83 Total: -1.00 -31.72 386.64 -8.97 -40.69 By element: Atomic # 1 Polarization: 11.32 SS G_CDS: -6.49 Total: 4.84 kcal Atomic # 6 Polarization: -16.99 SS G_CDS: -3.39 Total: -20.38 kcal Atomic # 7 Polarization: -27.11 SS G_CDS: 0.84 Total: -26.27 kcal Atomic # 8 Polarization: -17.42 SS G_CDS: -0.74 Total: -18.16 kcal Atomic # 14 Polarization: 18.49 SS G_CDS: -5.03 Total: 13.46 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -31.72 -8.97 -40.69 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835273902.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.233 kcal (2) G-P(sol) polarization free energy of solvation -31.719 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.972 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.691 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds