Wall clock time and date at job start Tue Mar 31 2020 15:33:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.35343 * 126.37579 * 2 1 4 4 C 1.41553 * 105.50187 * 180.09269 * 3 2 1 5 5 C 1.47582 * 126.52450 * 179.87509 * 4 3 2 6 6 O 1.21491 * 119.99753 * 359.71915 * 5 4 3 7 7 O 1.34726 * 119.99938 * 179.71409 * 5 4 3 8 8 C 1.45203 * 117.00112 * 180.02562 * 7 5 4 9 9 C 1.50697 * 109.47319 * 179.97438 * 8 7 5 10 10 C 1.38633 * 119.74949 * 269.72858 * 9 8 7 11 11 C 1.37619 * 120.24729 * 179.71954 * 10 9 8 12 12 C 1.40721 * 119.74248 * 0.57052 * 11 10 9 13 13 C 1.41402 * 120.24105 * 179.68297 * 12 11 10 14 14 H 1.07999 * 119.99551 * 204.40991 * 13 12 11 15 15 C 1.39940 * 120.00012 * 24.40252 * 13 12 11 16 16 N 1.30825 * 120.00049 * 17.85251 * 15 13 12 17 17 Si 1.86804 * 119.99952 * 197.84801 * 15 13 12 18 18 H 1.48499 * 109.46965 * 90.00080 * 17 15 13 19 19 H 1.48502 * 109.47012 * 210.00137 * 17 15 13 20 20 H 1.48498 * 109.46903 * 330.00249 * 17 15 13 21 21 C 1.40705 * 119.51384 * 359.70257 * 12 11 10 22 22 C 1.37618 * 119.74473 * 359.97438 * 21 12 11 23 23 N 1.31854 * 106.94996 * 359.62112 * 4 3 2 24 24 N 1.28465 * 110.06359 * 0.23580 * 23 4 3 25 25 C 1.46501 * 124.88174 * 179.97438 * 24 23 4 26 26 C 1.53001 * 109.47306 * 300.02797 * 25 24 23 27 27 C 1.53002 * 109.46939 * 60.02506 * 25 24 23 28 28 H 1.09003 * 109.47172 * 270.33521 * 1 2 3 29 29 H 1.08994 * 109.47562 * 30.34497 * 1 2 3 30 30 H 1.09005 * 109.46763 * 150.34336 * 1 2 3 31 31 H 1.08000 * 127.25517 * 359.97199 * 3 2 1 32 32 H 1.08994 * 109.46995 * 59.99718 * 8 7 5 33 33 H 1.08996 * 109.46641 * 299.99939 * 8 7 5 34 34 H 1.07997 * 119.87819 * 359.97438 * 10 9 8 35 35 H 1.07997 * 120.12883 * 180.27640 * 11 10 9 36 36 H 0.97006 * 119.99615 * 179.97438 * 16 15 13 37 37 H 1.07994 * 120.13097 * 179.97438 * 21 12 11 38 38 H 1.08005 * 119.87795 * 180.02562 * 22 21 12 39 39 H 1.09005 * 109.47559 * 180.02562 * 25 24 23 40 40 H 1.09002 * 109.46910 * 299.99904 * 26 25 24 41 41 H 1.09005 * 109.47080 * 59.99377 * 26 25 24 42 42 H 1.08999 * 109.47141 * 179.97438 * 26 25 24 43 43 H 1.08997 * 109.47097 * 60.00135 * 27 25 24 44 44 H 1.08999 * 109.47098 * 179.97438 * 27 25 24 45 45 H 1.09001 * 109.47360 * 300.00051 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3097 1.0897 0.0000 4 6 3.6323 0.5853 -0.0022 5 6 4.8756 1.3805 -0.0056 6 8 4.8204 2.5941 -0.0120 7 8 6.0717 0.7605 -0.0016 8 6 7.2524 1.6058 -0.0048 9 6 8.4879 0.7430 0.0010 10 6 9.0539 0.3602 1.2073 11 6 10.1789 -0.4323 1.2246 12 6 10.7615 -0.8441 0.0117 13 6 11.9213 -1.6529 0.0172 14 1 12.5863 -1.6492 -0.8338 15 6 12.2077 -2.4581 1.1254 16 7 11.2667 -2.7405 1.9893 17 14 13.9334 -3.1296 1.3711 18 1 14.7286 -2.1683 2.1766 19 1 13.8615 -4.4311 2.0827 20 1 14.5820 -3.3232 0.0494 21 6 10.1817 -0.4448 -1.2066 22 6 9.0529 0.3424 -1.1999 23 7 3.5421 -0.7301 0.0050 24 7 2.3081 -1.0872 0.0064 25 6 1.8374 -2.4745 0.0133 26 6 2.3575 -3.1958 -1.2318 27 6 2.3557 -3.1827 1.2666 28 1 -0.3634 0.0060 1.0277 29 1 -0.3634 0.8868 -0.5191 30 1 -0.3633 -0.8931 -0.5085 31 1 2.0053 2.1259 -0.0004 32 1 7.2479 2.2394 0.8820 33 1 7.2494 2.2307 -0.8979 34 1 8.6080 0.6817 2.1369 35 1 10.6156 -0.7331 2.1655 36 1 11.4651 -3.2990 2.7573 37 1 10.6209 -0.7547 -2.1432 38 1 8.6059 0.6498 -2.1338 39 1 0.7475 -2.4885 0.0125 40 1 1.9883 -2.6913 -2.1247 41 1 3.4475 -3.1818 -1.2311 42 1 2.0077 -4.2281 -1.2264 43 1 1.9851 -2.6689 2.1536 44 1 2.0051 -4.2147 1.2720 45 1 3.4456 -3.1688 1.2674 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000835273902.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:33:11 Heat of formation + Delta-G solvation = -17.485952 kcal Electronic energy + Delta-G solvation = -26703.738551 eV Core-core repulsion = 22879.720010 eV Total energy + Delta-G solvation = -3824.018541 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -43.83905 -41.25395 -39.48851 -37.53547 -36.72971 -35.70454 -33.78331 -32.65867 -31.68460 -31.25605 -29.08936 -28.29314 -27.95484 -26.48525 -25.11974 -22.98522 -22.71821 -22.16422 -21.85585 -20.53698 -19.29132 -18.30277 -18.15843 -17.64265 -17.37795 -17.08144 -16.79283 -15.99431 -15.80254 -15.64724 -15.46413 -14.76168 -14.49597 -14.18701 -14.13238 -14.02172 -13.98291 -13.87730 -13.64081 -13.55870 -13.45911 -13.14061 -12.90430 -12.88197 -12.71896 -12.62053 -12.38425 -12.19904 -12.14123 -11.92795 -11.74377 -11.69850 -11.48960 -11.31259 -11.07143 -10.25313 -9.95508 -9.46918 -9.36270 -8.70177 -6.41824 0.23350 0.68383 1.03253 1.08385 1.31734 1.37793 1.48704 1.51705 1.96245 2.05683 2.18576 2.69916 3.23964 3.63060 3.66832 3.76502 3.82861 3.99862 4.03212 4.05429 4.07980 4.32526 4.44828 4.51443 4.51693 4.53243 4.61324 4.62493 4.74335 4.77167 4.81164 4.97241 4.99162 5.07340 5.09869 5.17977 5.22024 5.26925 5.29503 5.35699 5.38507 5.62597 5.85162 5.87822 6.03027 6.11980 6.28961 6.57244 6.61669 6.86136 6.93661 6.95027 8.26656 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.014809 B = 0.002596 C = 0.002328 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1890.295520 B =10784.931326 C =12026.479078 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.023 3.977 3 C -0.193 4.193 4 C -0.039 4.039 5 C 0.548 3.452 6 O -0.530 6.530 7 O -0.353 6.353 8 C 0.139 3.861 9 C -0.231 4.231 10 C -0.080 4.080 11 C -0.193 4.193 12 C 0.088 3.912 13 C -0.491 4.491 14 H 0.081 0.919 15 C 0.033 3.967 16 N -0.819 5.819 17 Si 0.988 3.012 18 H -0.261 1.261 19 H -0.267 1.267 20 H -0.256 1.256 21 C -0.244 4.244 22 C -0.065 4.065 23 N -0.258 5.258 24 N -0.266 5.266 25 C 0.132 3.868 26 C -0.163 4.163 27 C -0.163 4.163 28 H 0.096 0.904 29 H 0.100 0.900 30 H 0.095 0.905 31 H 0.174 0.826 32 H 0.071 0.929 33 H 0.077 0.923 34 H 0.104 0.896 35 H 0.106 0.894 36 H 0.291 0.709 37 H 0.104 0.896 38 H 0.116 0.884 39 H 0.155 0.845 40 H 0.064 0.936 41 H 0.042 0.958 42 H 0.111 0.889 43 H 0.063 0.937 44 H 0.111 0.889 45 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.427 -1.736 -1.756 23.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.101 4.101 3 C -0.220 4.220 4 C -0.195 4.195 5 C 0.392 3.608 6 O -0.418 6.418 7 O -0.268 6.268 8 C 0.066 3.934 9 C -0.232 4.232 10 C -0.099 4.099 11 C -0.212 4.212 12 C 0.086 3.914 13 C -0.520 4.520 14 H 0.099 0.901 15 C -0.183 4.183 16 N -0.444 5.444 17 Si 0.808 3.192 18 H -0.186 1.186 19 H -0.191 1.191 20 H -0.180 1.180 21 C -0.264 4.264 22 C -0.083 4.083 23 N -0.096 5.096 24 N -0.057 5.057 25 C 0.034 3.966 26 C -0.221 4.221 27 C -0.221 4.221 28 H 0.115 0.885 29 H 0.119 0.881 30 H 0.114 0.886 31 H 0.191 0.809 32 H 0.090 0.910 33 H 0.095 0.905 34 H 0.122 0.878 35 H 0.124 0.876 36 H 0.101 0.899 37 H 0.122 0.878 38 H 0.134 0.866 39 H 0.172 0.828 40 H 0.083 0.917 41 H 0.061 0.939 42 H 0.129 0.871 43 H 0.082 0.918 44 H 0.129 0.871 45 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -22.824 -2.600 -1.545 23.023 hybrid contribution 0.886 0.636 0.252 1.119 sum -21.938 -1.964 -1.293 22.063 Atomic orbital electron populations 1.20594 0.82518 1.05799 1.05018 1.22145 0.97564 0.85223 1.05134 1.21726 0.88799 1.01150 1.10340 1.20857 0.92702 0.90500 1.15411 1.20073 0.83336 0.85476 0.71934 1.90769 1.88190 1.14749 1.48140 1.86830 1.14768 1.42511 1.82733 1.21686 0.78986 0.90504 1.02176 1.18972 0.99067 1.11498 0.93682 1.20768 0.95822 0.96897 0.96404 1.21265 0.99404 1.02229 0.98341 1.18049 0.91968 0.89644 0.91765 1.19939 1.07184 1.21791 1.03084 0.90052 1.26879 1.02794 0.94710 0.93875 1.69894 1.35221 1.28078 1.11173 0.85122 0.76419 0.78006 0.79684 1.18555 1.19111 1.17968 1.21168 1.00196 1.08008 0.97013 1.20704 0.95121 0.95953 0.96527 1.73676 1.03824 1.14436 1.17685 1.46333 1.01821 1.09021 1.48566 1.22178 1.01951 0.74226 0.98219 1.22178 1.01636 1.02442 0.95797 1.22173 1.01586 1.02552 0.95750 0.88507 0.88101 0.88649 0.80876 0.91038 0.90502 0.87805 0.87635 0.89854 0.87752 0.86616 0.82794 0.91702 0.93866 0.87080 0.91831 0.87064 0.93932 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.57 9.92 71.24 0.71 0.14 16 2 C 0.02 0.44 6.92 41.40 0.29 0.73 16 3 C -0.19 -4.95 10.73 22.42 0.24 -4.71 16 4 C -0.04 -1.34 7.17 42.43 0.30 -1.04 16 5 C 0.55 21.69 7.97 70.29 0.56 22.25 16 6 O -0.53 -21.62 16.72 19.87 0.33 -21.29 16 7 O -0.35 -15.31 10.21 -56.36 -0.58 -15.89 16 8 C 0.14 5.73 5.59 71.23 0.40 6.13 16 9 C -0.23 -10.89 5.54 -19.68 -0.11 -11.00 16 10 C -0.08 -4.03 9.67 22.22 0.21 -3.82 16 11 C -0.19 -10.64 8.70 22.73 0.20 -10.44 16 12 C 0.09 4.94 5.58 -21.29 -0.12 4.82 16 13 C -0.49 -26.86 9.05 23.46 0.21 -26.65 16 14 H 0.08 4.25 7.91 -2.91 -0.02 4.23 16 15 C 0.03 1.69 5.14 85.26 0.44 2.13 16 16 N -0.82 -43.47 10.95 21.83 0.24 -43.23 16 17 Si 0.99 38.18 29.60 68.60 2.03 40.21 16 18 H -0.26 -9.78 7.11 99.48 0.71 -9.08 16 19 H -0.27 -9.76 7.11 99.48 0.71 -9.05 16 20 H -0.26 -9.59 7.11 99.48 0.71 -8.88 16 21 C -0.24 -12.55 9.80 22.73 0.22 -12.32 16 22 C -0.06 -3.06 9.67 22.22 0.21 -2.85 16 23 N -0.26 -8.48 11.65 -48.21 -0.56 -9.05 16 24 N -0.27 -5.99 3.04 -314.19 -0.96 -6.94 16 25 C 0.13 1.82 3.55 44.99 0.16 1.98 16 26 C -0.16 -2.35 9.37 71.98 0.67 -1.67 16 27 C -0.16 -2.43 9.37 71.98 0.67 -1.75 16 28 H 0.10 0.43 8.14 -2.39 -0.02 0.41 16 29 H 0.10 0.50 8.14 -2.39 -0.02 0.48 16 30 H 0.09 0.23 7.02 -2.38 -0.02 0.21 16 31 H 0.17 3.83 8.06 -2.91 -0.02 3.81 16 32 H 0.07 2.80 8.07 -2.39 -0.02 2.78 16 33 H 0.08 2.93 8.08 -2.39 -0.02 2.91 16 34 H 0.10 4.75 8.06 -2.91 -0.02 4.72 16 35 H 0.11 6.00 6.16 -2.91 -0.02 5.98 16 36 H 0.29 13.86 8.30 -92.70 -0.77 13.09 16 37 H 0.10 4.99 8.06 -2.91 -0.02 4.97 16 38 H 0.12 4.75 8.06 -2.91 -0.02 4.73 16 39 H 0.15 0.73 6.55 -2.38 -0.02 0.72 16 40 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 41 H 0.04 0.95 8.14 -2.38 -0.02 0.93 16 42 H 0.11 0.89 8.14 -2.39 -0.02 0.87 16 43 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 44 H 0.11 0.94 8.14 -2.39 -0.02 0.92 16 45 H 0.04 0.96 8.14 -2.39 -0.02 0.94 16 Total: -1.00 -73.56 386.64 6.78 -66.78 By element: Atomic # 1 Polarization: 26.49 SS G_CDS: 0.99 Total: 27.48 kcal Atomic # 6 Polarization: -43.35 SS G_CDS: 5.28 Total: -38.07 kcal Atomic # 7 Polarization: -57.94 SS G_CDS: -1.28 Total: -59.22 kcal Atomic # 8 Polarization: -36.94 SS G_CDS: -0.24 Total: -37.18 kcal Atomic # 14 Polarization: 38.18 SS G_CDS: 2.03 Total: 40.21 kcal Total: -73.56 6.78 -66.78 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000835273902.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.296 kcal (2) G-P(sol) polarization free energy of solvation -73.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.776 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.782 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.486 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds