Wall clock time and date at job start Tue Mar 31 2020 15:03:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42908 * 114.00204 * 2 1 4 4 C 1.52992 * 109.46835 * 179.97438 * 3 2 1 5 5 N 1.46497 * 109.47471 * 65.00487 * 4 3 2 6 6 C 1.36878 * 119.99828 * 265.20386 * 5 4 3 7 7 H 1.08005 * 119.99712 * 136.97775 * 6 5 4 8 8 C 1.39045 * 119.99963 * 316.97719 * 6 5 4 9 9 N 1.31362 * 119.99861 * 343.44012 * 8 6 5 10 10 Si 1.86794 * 119.99874 * 163.43974 * 8 6 5 11 11 H 1.48504 * 109.47401 * 89.99866 * 10 8 6 12 12 H 1.48501 * 109.47446 * 210.00468 * 10 8 6 13 13 H 1.48507 * 109.47101 * 330.00012 * 10 8 6 14 14 C 1.34781 * 120.00284 * 85.20244 * 5 4 3 15 15 O 1.21586 * 119.99876 * 4.62571 * 14 5 4 16 16 C 1.47733 * 120.00175 * 184.62966 * 14 5 4 17 17 C 1.39692 * 120.12067 * 324.52686 * 16 14 5 18 18 C 1.37950 * 119.98249 * 180.25900 * 17 16 14 19 19 C 1.38291 * 120.22109 * 359.46048 * 18 17 16 20 20 C 1.50695 * 119.87781 * 180.25715 * 19 18 17 21 21 C 1.38926 * 120.23527 * 0.51811 * 19 18 17 22 22 N 1.40231 * 119.98598 * 179.74205 * 21 19 18 23 23 C 1.36570 * 125.66736 * 309.71775 * 22 21 19 24 24 C 1.34854 * 108.19755 * 179.89198 * 23 22 21 25 25 C 1.40948 * 107.46686 * 0.35899 * 24 23 22 26 26 C 1.34847 * 107.46510 * 359.77991 * 25 24 23 27 27 C 1.38560 * 120.01972 * 359.76254 * 21 19 18 28 28 H 1.08992 * 109.47345 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.47006 * 300.00406 * 1 2 3 30 30 H 1.09008 * 109.47259 * 59.99491 * 1 2 3 31 31 H 1.08999 * 109.46658 * 60.00198 * 3 2 1 32 32 H 1.08997 * 109.46745 * 300.00391 * 3 2 1 33 33 H 1.09000 * 109.47355 * 304.99942 * 4 3 2 34 34 H 1.09003 * 109.47268 * 185.00130 * 4 3 2 35 35 H 0.97005 * 119.99395 * 180.02562 * 9 8 6 36 36 H 1.08008 * 120.00528 * 359.97438 * 17 16 14 37 37 H 1.07995 * 119.88813 * 179.69915 * 18 17 16 38 38 H 1.08993 * 109.47259 * 270.25751 * 20 19 18 39 39 H 1.09004 * 109.46988 * 30.26278 * 20 19 18 40 40 H 1.09002 * 109.46672 * 150.25560 * 20 19 18 41 41 H 1.07994 * 125.89977 * 0.03066 * 23 22 21 42 42 H 1.08002 * 126.26580 * 180.13796 * 24 23 22 43 43 H 1.08000 * 126.26073 * 179.74684 * 25 24 23 44 44 H 1.08003 * 125.89825 * 179.97438 * 26 25 24 45 45 H 1.08009 * 120.10772 * 180.02562 * 27 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5354 1.1846 0.0006 5 7 3.9767 0.5640 -1.2509 6 6 4.1922 -0.7866 -1.3062 7 1 3.8444 -1.3545 -2.1565 8 6 4.8590 -1.4273 -0.2678 9 7 5.5604 -0.7264 0.5938 10 14 4.7572 -3.2848 -0.0981 11 1 5.8631 -3.9133 -0.8645 12 1 4.8732 -3.6581 1.3346 13 1 3.4543 -3.7598 -0.6294 14 6 4.1704 1.3228 -2.3478 15 8 4.0608 2.5317 -2.2778 16 6 4.5158 0.6858 -3.6352 17 6 5.3307 -0.4486 -3.6596 18 6 5.6558 -1.0380 -4.8637 19 6 5.1685 -0.5163 -6.0481 20 6 5.5238 -1.1699 -7.3587 21 6 4.3570 0.6112 -6.0344 22 7 3.8702 1.1390 -7.2390 23 6 4.6204 1.4261 -8.3434 24 6 3.7989 1.9126 -9.2958 25 6 2.4957 1.9350 -8.7592 26 6 2.5680 1.4568 -7.5005 27 6 4.0289 1.2146 -4.8310 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 1.6887 1.8463 0.8900 32 1 1.6886 1.8464 -0.8899 33 1 3.8507 0.5684 0.8427 34 1 3.9785 2.1764 0.0902 35 1 6.0258 -1.1736 1.3180 36 1 5.7098 -0.8613 -2.7363 37 1 6.2898 -1.9121 -4.8812 38 1 6.4410 -0.7281 -7.7481 39 1 5.6726 -2.2384 -7.2033 40 1 4.7147 -1.0158 -8.0726 41 1 5.6869 1.2855 -8.4386 42 1 4.0873 2.2306 -10.2868 43 1 1.6029 2.2738 -9.2637 44 1 1.7393 1.3448 -6.8170 45 1 3.3978 2.0910 -4.8187 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000837233167.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:03:14 Heat of formation + Delta-G solvation = 12.976504 kcal Electronic energy + Delta-G solvation = -28259.818891 eV Core-core repulsion = 24437.121301 eV Total energy + Delta-G solvation = -3822.697590 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.41052 -39.38135 -37.93826 -36.92704 -34.88108 -33.05371 -32.28127 -31.73846 -29.50965 -28.77116 -28.58911 -26.82332 -25.84081 -24.88327 -22.95917 -22.31084 -21.38974 -20.26512 -19.99139 -19.23965 -18.21974 -16.89986 -16.04250 -15.71583 -15.50748 -15.20463 -15.09292 -14.58159 -14.44592 -14.29169 -13.89879 -13.79662 -13.54895 -13.49275 -13.14402 -13.08183 -12.76717 -12.28104 -12.19649 -12.09292 -11.92329 -11.74287 -11.47117 -11.39053 -11.21125 -11.14679 -11.07871 -10.84830 -10.70345 -10.43912 -10.15881 -9.24358 -9.17410 -9.04884 -8.65192 -8.38910 -8.05701 -7.89938 -7.55958 -6.46093 -4.15920 1.33014 1.55168 2.53381 3.07379 3.10809 3.14337 3.18808 3.24788 3.60824 4.04103 4.30528 4.41385 4.61470 4.92143 5.01574 5.05883 5.17622 5.33315 5.41900 5.55225 5.60035 5.62938 5.65926 5.68275 5.73854 5.81021 5.88497 5.92293 5.95874 5.99224 6.06857 6.20041 6.24220 6.32764 6.35508 6.37765 6.54609 6.66977 6.86250 7.01112 7.08589 7.13839 7.20451 7.37017 7.37637 7.71095 7.73267 7.90104 8.26131 8.96546 9.34539 9.77931 10.56924 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.012966 B = 0.004107 C = 0.003539 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2158.920703 B = 6816.144074 C = 7910.110545 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.365 6.365 3 C 0.051 3.949 4 C 0.119 3.881 5 N -0.416 5.416 6 C -0.328 4.328 7 H 0.090 0.910 8 C 0.050 3.950 9 N -0.859 5.859 10 Si 0.912 3.088 11 H -0.276 1.276 12 H -0.281 1.281 13 H -0.267 1.267 14 C 0.508 3.492 15 O -0.602 6.602 16 C -0.079 4.079 17 C -0.057 4.057 18 C -0.128 4.128 19 C -0.080 4.080 20 C -0.114 4.114 21 C 0.088 3.912 22 N -0.389 5.389 23 C -0.008 4.008 24 C -0.205 4.205 25 C -0.204 4.204 26 C -0.008 4.008 27 C -0.075 4.075 28 H 0.078 0.922 29 H 0.031 0.969 30 H 0.032 0.968 31 H 0.042 0.958 32 H 0.041 0.959 33 H 0.109 0.891 34 H 0.074 0.926 35 H 0.272 0.728 36 H 0.168 0.832 37 H 0.129 0.871 38 H 0.069 0.931 39 H 0.068 0.932 40 H 0.068 0.932 41 H 0.158 0.842 42 H 0.134 0.866 43 H 0.134 0.866 44 H 0.159 0.841 45 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.098 -1.427 -9.612 10.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.283 6.283 3 C -0.027 4.027 4 C -0.004 4.004 5 N -0.132 5.132 6 C -0.456 4.456 7 H 0.107 0.893 8 C -0.157 4.157 9 N -0.495 5.495 10 Si 0.738 3.262 11 H -0.202 1.202 12 H -0.207 1.207 13 H -0.191 1.191 14 C 0.297 3.703 15 O -0.489 6.489 16 C -0.083 4.083 17 C -0.075 4.075 18 C -0.146 4.146 19 C -0.082 4.082 20 C -0.171 4.171 21 C -0.002 4.002 22 N -0.060 5.060 23 C -0.136 4.136 24 C -0.230 4.230 25 C -0.228 4.228 26 C -0.136 4.136 27 C -0.095 4.095 28 H 0.096 0.904 29 H 0.049 0.951 30 H 0.050 0.950 31 H 0.060 0.940 32 H 0.059 0.941 33 H 0.127 0.873 34 H 0.092 0.908 35 H 0.082 0.918 36 H 0.185 0.815 37 H 0.147 0.853 38 H 0.088 0.912 39 H 0.087 0.913 40 H 0.086 0.914 41 H 0.176 0.824 42 H 0.152 0.848 43 H 0.152 0.848 44 H 0.177 0.823 45 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -2.817 -1.172 -9.047 9.547 hybrid contribution -0.420 -0.674 0.250 0.832 sum -3.236 -1.846 -8.797 9.554 Atomic orbital electron populations 1.22649 0.83289 1.01804 0.98886 1.88128 1.17495 1.27652 1.95057 1.23047 0.96386 0.84419 0.98810 1.21415 0.89179 0.99220 0.90622 1.43123 1.55446 1.07200 1.07450 1.19325 1.35904 0.82066 1.08319 0.89260 1.25364 0.93959 0.99932 0.96441 1.69875 1.27147 1.36748 1.15700 0.86172 0.79062 0.83027 0.77945 1.20192 1.20679 1.19096 1.18249 0.81054 0.86085 0.84922 1.90629 1.57917 1.14082 1.86273 1.19888 0.98914 0.96169 0.93320 1.22393 0.93315 0.92313 0.99463 1.20966 1.01314 1.01218 0.91142 1.19835 0.98144 0.93787 0.96396 1.20848 1.01746 1.00388 0.94128 1.17350 1.02533 0.96151 0.84138 1.41491 1.07112 1.47466 1.09924 1.21875 0.97472 1.07326 0.86918 1.20853 0.93398 1.09051 0.99653 1.20851 0.97901 1.08917 0.95133 1.21962 0.86056 1.07024 0.98606 1.21012 0.99723 0.98810 0.90001 0.90366 0.95080 0.94986 0.94029 0.94120 0.87320 0.90813 0.91821 0.81450 0.85349 0.91229 0.91292 0.91352 0.82428 0.84797 0.84777 0.82347 0.85349 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.48 11.01 101.05 1.11 1.59 16 2 O -0.37 -7.51 10.40 -35.23 -0.37 -7.88 16 3 C 0.05 1.03 6.25 37.15 0.23 1.26 16 4 C 0.12 2.74 5.32 -4.05 -0.02 2.72 16 5 N -0.42 -10.09 2.44 -115.93 -0.28 -10.37 16 6 C -0.33 -7.84 5.83 -15.00 -0.09 -7.93 16 7 H 0.09 2.11 6.47 -52.48 -0.34 1.77 16 8 C 0.05 1.18 4.93 -17.45 -0.09 1.10 16 9 N -0.86 -21.47 11.64 55.50 0.65 -20.82 16 10 Si 0.91 18.79 29.58 -169.99 -5.03 13.76 16 11 H -0.28 -5.52 7.11 56.52 0.40 -5.12 16 12 H -0.28 -5.87 7.11 56.52 0.40 -5.47 16 13 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 14 C 0.51 12.34 7.33 -12.38 -0.09 12.25 16 15 O -0.60 -15.86 16.46 5.29 0.09 -15.77 16 16 C -0.08 -1.68 5.46 -104.99 -0.57 -2.25 16 17 C -0.06 -1.09 7.79 -39.14 -0.30 -1.39 16 18 C -0.13 -2.04 9.67 -39.67 -0.38 -2.43 16 19 C -0.08 -1.23 5.88 -104.35 -0.61 -1.84 16 20 C -0.11 -1.37 8.60 36.00 0.31 -1.06 16 21 C 0.09 1.48 5.96 -83.64 -0.50 0.99 16 22 N -0.39 -5.99 2.45 -60.96 -0.15 -6.14 16 23 C -0.01 -0.10 9.13 -16.64 -0.15 -0.25 16 24 C -0.21 -2.65 10.86 -39.76 -0.43 -3.08 16 25 C -0.20 -2.71 10.86 -39.76 -0.43 -3.14 16 26 C -0.01 -0.12 11.12 -16.65 -0.19 -0.30 16 27 C -0.08 -1.44 9.22 -38.98 -0.36 -1.80 16 28 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 29 H 0.03 0.42 8.14 -51.93 -0.42 -0.01 16 30 H 0.03 0.47 8.14 -51.92 -0.42 0.04 16 31 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.11 2.65 5.83 -51.93 -0.30 2.35 16 34 H 0.07 1.71 7.51 -51.93 -0.39 1.32 16 35 H 0.27 6.45 8.31 -40.82 -0.34 6.11 16 36 H 0.17 3.49 5.66 -52.48 -0.30 3.20 16 37 H 0.13 1.71 8.06 -52.49 -0.42 1.28 16 38 H 0.07 0.73 7.79 -51.93 -0.40 0.32 16 39 H 0.07 0.73 8.09 -51.93 -0.42 0.31 16 40 H 0.07 0.85 6.63 -51.93 -0.34 0.51 16 41 H 0.16 1.84 7.44 -52.49 -0.39 1.45 16 42 H 0.13 1.42 8.06 -52.49 -0.42 1.00 16 43 H 0.13 1.49 8.06 -52.49 -0.42 1.07 16 44 H 0.16 2.11 8.06 -52.48 -0.42 1.69 16 45 H 0.13 2.51 8.01 -52.48 -0.42 2.09 16 LS Contribution 374.19 15.07 5.64 5.64 Total: -1.00 -28.76 374.19 -8.27 -37.03 By element: Atomic # 1 Polarization: 16.40 SS G_CDS: -6.25 Total: 10.15 kcal Atomic # 6 Polarization: -3.02 SS G_CDS: -2.56 Total: -5.59 kcal Atomic # 7 Polarization: -37.55 SS G_CDS: 0.21 Total: -37.33 kcal Atomic # 8 Polarization: -23.37 SS G_CDS: -0.28 Total: -23.65 kcal Atomic # 14 Polarization: 18.79 SS G_CDS: -5.03 Total: 13.76 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -28.76 -8.27 -37.03 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000837233167.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.005 kcal (2) G-P(sol) polarization free energy of solvation -28.760 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.245 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.269 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.028 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.977 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds