Wall clock time and date at job start Tue Mar 31 2020 15:34:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30842 * 125.89820 * 2 1 4 4 N 1.40085 * 108.20261 * 180.02562 * 3 2 1 5 5 C 1.46497 * 126.03545 * 180.02562 * 4 3 2 6 6 C 1.34941 * 107.92866 * 0.27098 * 4 3 2 7 7 C 1.35322 * 107.74550 * 359.57030 * 6 4 3 8 8 C 1.50702 * 126.04314 * 180.15834 * 7 6 4 9 9 O 1.45199 * 109.46957 * 0.31754 * 8 7 6 10 10 C 1.34227 * 117.00356 * 180.02562 * 9 8 7 11 11 O 1.20828 * 119.99342 * 359.97438 * 10 9 8 12 12 C 1.50697 * 120.00611 * 180.02562 * 10 9 8 13 13 C 1.53000 * 109.47526 * 179.97438 * 12 10 9 14 14 H 1.09004 * 109.46647 * 54.99852 * 13 12 10 15 15 C 1.50699 * 109.46854 * 294.99944 * 13 12 10 16 16 H 1.07999 * 119.99983 * 325.83355 * 15 13 12 17 17 C 1.37874 * 119.99635 * 145.84293 * 15 13 12 18 18 N 1.31513 * 120.00706 * 6.10660 * 17 15 13 19 19 Si 1.86807 * 119.99757 * 186.11473 * 17 15 13 20 20 H 1.48491 * 109.47458 * 89.99554 * 19 17 15 21 21 H 1.48498 * 109.47078 * 209.99798 * 19 17 15 22 22 H 1.48506 * 109.46823 * 329.99463 * 19 17 15 23 23 C 1.50699 * 109.47319 * 174.99384 * 13 12 10 24 24 C 1.38239 * 119.99634 * 63.45957 * 23 13 12 25 25 C 1.38237 * 119.99757 * 179.81058 * 24 23 13 26 26 C 1.38231 * 119.99980 * 0.39398 * 25 24 23 27 27 C 1.38238 * 120.00285 * 359.86200 * 26 25 24 28 28 C 1.38232 * 120.00069 * 243.73733 * 23 13 12 29 29 H 1.08995 * 109.47333 * 89.96790 * 1 2 3 30 30 H 1.09000 * 109.47211 * 209.97004 * 1 2 3 31 31 H 1.09002 * 109.47041 * 329.96893 * 1 2 3 32 32 H 1.08997 * 109.47238 * 90.02525 * 5 4 3 33 33 H 1.09007 * 109.47401 * 210.03152 * 5 4 3 34 34 H 1.09000 * 109.47206 * 330.02796 * 5 4 3 35 35 H 1.08001 * 126.12911 * 179.73538 * 6 4 3 36 36 H 1.08996 * 109.46573 * 120.31123 * 8 7 6 37 37 H 1.09000 * 109.47303 * 240.31373 * 8 7 6 38 38 H 1.09007 * 109.46480 * 299.99360 * 12 10 9 39 39 H 1.08994 * 109.47150 * 59.99037 * 12 10 9 40 40 H 0.97000 * 120.00162 * 180.02562 * 18 17 15 41 41 H 1.08000 * 120.00209 * 359.97438 * 24 23 13 42 42 H 1.08002 * 119.99710 * 180.23227 * 25 24 23 43 43 H 1.08001 * 120.00185 * 179.83470 * 26 25 24 44 44 H 1.07996 * 120.00475 * 179.97438 * 27 26 25 45 45 H 1.07999 * 120.00195 * 359.97438 * 28 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2742 1.0599 0.0000 4 7 3.6088 0.6341 -0.0006 5 6 4.7899 1.5007 -0.0003 6 6 3.6143 -0.7153 -0.0070 7 6 2.3271 -1.1330 -0.0007 8 6 1.8599 -2.5658 -0.0012 9 8 3.0113 -3.4503 -0.0018 10 6 2.7660 -4.7700 -0.0028 11 8 1.6268 -5.1726 -0.0026 12 6 3.9113 -5.7494 -0.0030 13 6 3.3615 -7.1772 -0.0035 14 1 2.6809 -7.3041 -0.8455 15 6 2.6205 -7.4306 1.2840 16 1 2.9597 -6.9725 2.2014 17 6 1.5097 -8.2473 1.2908 18 7 1.1668 -8.9003 0.2020 19 14 0.4916 -8.4263 2.8468 20 1 -0.5750 -7.3933 2.8620 21 1 -0.1262 -9.7762 2.8815 22 1 1.3668 -8.2518 4.0338 23 6 4.5018 -8.1546 -0.1277 24 6 5.4589 -8.2299 0.8670 25 6 6.5028 -9.1293 0.7550 26 6 6.5940 -9.9474 -0.3555 27 6 5.6399 -9.8684 -1.3526 28 6 4.5939 -8.9717 -1.2388 29 1 -0.3634 0.0006 -1.0276 30 1 -0.3633 -0.8902 0.5134 31 1 -0.3633 0.8897 0.5143 32 1 5.0833 1.7146 1.0274 33 1 5.6091 0.9987 -0.5151 34 1 4.5561 2.4338 -0.5130 35 1 4.4891 -1.3485 -0.0131 36 1 1.2591 -2.7521 0.8890 37 1 1.2584 -2.7515 -0.8910 38 1 4.5217 -5.5944 -0.8928 39 1 4.5211 -5.5955 0.8872 40 1 0.3851 -9.4746 0.2067 41 1 5.3896 -7.5881 1.7328 42 1 7.2484 -9.1907 1.5338 43 1 7.4110 -10.6482 -0.4443 44 1 5.7114 -10.5073 -2.2204 45 1 3.8484 -8.9100 -2.0178 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000837694748.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:34:44 Heat of formation + Delta-G solvation = 10.064686 kcal Electronic energy + Delta-G solvation = -27023.172900 eV Core-core repulsion = 23200.349045 eV Total energy + Delta-G solvation = -3822.823855 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.35111 -39.63022 -38.34985 -35.97171 -34.17960 -34.01827 -31.59050 -31.15127 -30.02628 -29.77603 -28.99611 -27.03854 -25.69841 -24.43872 -22.93153 -21.68459 -21.14680 -20.13336 -19.70916 -19.13546 -16.99330 -16.71559 -16.58958 -16.02950 -15.81820 -15.41563 -15.34029 -14.45741 -14.29760 -14.14050 -13.91460 -13.78109 -13.47819 -13.19757 -13.05230 -12.67943 -12.57728 -12.39697 -12.25674 -12.17819 -12.01983 -11.82706 -11.66380 -11.48243 -10.91229 -10.79743 -10.74072 -10.59517 -10.28328 -10.23935 -10.11404 -9.56213 -9.41554 -9.29345 -9.06500 -8.41007 -8.36096 -8.05924 -7.64591 -5.98801 -3.99780 1.79414 2.27314 2.31597 2.38659 2.62767 3.18219 3.30211 3.36656 3.42176 3.43927 4.31828 4.48196 4.72666 4.79495 4.87157 4.91603 5.14751 5.16931 5.28299 5.38036 5.50903 5.57004 5.61441 5.65462 5.68663 5.71386 5.78621 5.82479 5.93409 6.04089 6.11438 6.13599 6.26580 6.39548 6.49128 6.53734 6.71986 6.87602 6.91421 6.99355 7.18908 7.29736 7.39563 7.49303 7.61526 7.80476 7.91631 8.00260 8.30664 8.72228 9.00684 9.63462 11.11100 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.011912 B = 0.003171 C = 0.002673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2349.963440 B = 8829.125165 C =10472.814893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.086 3.914 3 N -0.301 5.301 4 N -0.382 5.382 5 C 0.104 3.896 6 C 0.082 3.918 7 C -0.240 4.240 8 C 0.151 3.849 9 O -0.375 6.375 10 C 0.457 3.543 11 O -0.466 6.466 12 C -0.094 4.094 13 C 0.076 3.924 14 H 0.074 0.926 15 C -0.501 4.501 16 H 0.053 0.947 17 C 0.080 3.920 18 N -0.879 5.879 19 Si 0.886 3.114 20 H -0.279 1.279 21 H -0.288 1.288 22 H -0.275 1.275 23 C -0.021 4.021 24 C -0.114 4.114 25 C -0.131 4.131 26 C -0.154 4.154 27 C -0.128 4.128 28 C -0.117 4.117 29 H 0.078 0.922 30 H 0.080 0.920 31 H 0.073 0.927 32 H 0.073 0.927 33 H 0.088 0.912 34 H 0.086 0.914 35 H 0.181 0.819 36 H 0.073 0.927 37 H 0.072 0.928 38 H 0.077 0.923 39 H 0.088 0.912 40 H 0.260 0.740 41 H 0.114 0.886 42 H 0.106 0.894 43 H 0.104 0.896 44 H 0.106 0.894 45 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.810 14.325 -2.341 16.483 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.081 4.081 3 N -0.124 5.124 4 N -0.163 5.163 5 C -0.037 4.037 6 C -0.064 4.064 7 C -0.252 4.252 8 C 0.075 3.925 9 O -0.294 6.294 10 C 0.298 3.702 11 O -0.348 6.348 12 C -0.132 4.132 13 C 0.057 3.943 14 H 0.092 0.908 15 C -0.538 4.538 16 H 0.071 0.929 17 C -0.123 4.123 18 N -0.516 5.516 19 Si 0.715 3.285 20 H -0.205 1.205 21 H -0.214 1.214 22 H -0.200 1.200 23 C -0.022 4.022 24 C -0.133 4.133 25 C -0.150 4.150 26 C -0.172 4.172 27 C -0.146 4.146 28 C -0.136 4.136 29 H 0.097 0.903 30 H 0.099 0.901 31 H 0.092 0.908 32 H 0.092 0.908 33 H 0.106 0.894 34 H 0.105 0.895 35 H 0.198 0.802 36 H 0.092 0.908 37 H 0.090 0.910 38 H 0.095 0.905 39 H 0.106 0.894 40 H 0.070 0.930 41 H 0.132 0.868 42 H 0.124 0.876 43 H 0.122 0.878 44 H 0.124 0.876 45 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 7.467 15.459 -2.410 17.336 hybrid contribution -0.629 -1.171 0.969 1.645 sum 6.837 14.288 -1.441 15.905 Atomic orbital electron populations 1.20233 0.86496 1.03559 1.03210 1.22117 0.96896 0.89606 0.99451 1.77269 0.86489 1.22481 1.26142 1.48345 1.05437 1.04916 1.57646 1.21831 0.83684 0.94886 1.03312 1.22358 0.99685 0.84187 1.00191 1.19774 0.92693 0.94740 1.17970 1.20773 0.86477 0.83056 1.02162 1.86425 1.38329 1.19034 1.85599 1.23940 0.92264 0.80651 0.73360 1.90725 1.23579 1.78407 1.42092 1.21606 0.93968 0.94896 1.02708 1.17913 0.90748 0.84610 1.01008 0.90795 1.20721 1.10737 1.29469 0.92879 0.92900 1.24810 0.96843 0.94879 0.95805 1.69906 1.26042 1.28179 1.27463 0.86689 0.80881 0.77195 0.83774 1.20543 1.21416 1.20019 1.20620 0.93341 0.96901 0.91344 1.20959 0.94333 0.99123 0.98841 1.20977 0.98838 0.97458 0.97686 1.20808 0.99789 1.00983 0.95651 1.20986 0.95712 0.99246 0.98674 1.21084 0.97259 0.96766 0.98456 0.90289 0.90125 0.90818 0.90825 0.89364 0.89484 0.80151 0.90850 0.90951 0.90476 0.89409 0.92998 0.86799 0.87612 0.87774 0.87591 0.86769 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.78 10.26 36.01 0.37 -0.41 16 2 C 0.09 1.14 7.22 -82.40 -0.59 0.55 16 3 N -0.30 -4.15 12.58 33.67 0.42 -3.72 16 4 N -0.38 -4.48 4.01 -68.16 -0.27 -4.75 16 5 C 0.10 0.71 11.47 59.85 0.69 1.40 16 6 C 0.08 1.01 10.82 -17.22 -0.19 0.82 16 7 C -0.24 -3.34 6.08 -105.05 -0.64 -3.98 16 8 C 0.15 2.30 5.65 36.01 0.20 2.51 16 9 O -0.37 -6.33 9.51 -39.25 -0.37 -6.70 16 10 C 0.46 9.16 7.71 36.00 0.28 9.44 16 11 O -0.47 -11.18 14.73 -18.75 -0.28 -11.45 16 12 C -0.09 -1.79 5.06 -27.88 -0.14 -1.93 16 13 C 0.08 1.76 1.67 -92.92 -0.16 1.60 16 14 H 0.07 1.95 6.98 -51.93 -0.36 1.59 16 15 C -0.50 -13.10 6.37 -34.44 -0.22 -13.32 16 16 H 0.05 1.38 7.82 -52.49 -0.41 0.97 16 17 C 0.08 2.22 5.45 -17.82 -0.10 2.12 16 18 N -0.88 -25.24 12.87 55.43 0.71 -24.53 16 19 Si 0.89 21.79 29.54 -169.99 -5.02 16.77 16 20 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 21 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 22 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 23 C -0.02 -0.46 4.77 -104.62 -0.50 -0.96 16 24 C -0.11 -2.25 8.86 -39.58 -0.35 -2.60 16 25 C -0.13 -2.30 10.05 -39.58 -0.40 -2.70 16 26 C -0.15 -2.62 10.05 -39.58 -0.40 -3.02 16 27 C -0.13 -2.31 10.05 -39.58 -0.40 -2.71 16 28 C -0.12 -2.42 9.67 -39.58 -0.38 -2.80 16 29 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 30 H 0.08 0.78 7.96 -51.93 -0.41 0.36 16 31 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 33 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.09 0.53 8.14 -51.93 -0.42 0.10 16 35 H 0.18 1.86 7.84 -52.49 -0.41 1.45 16 36 H 0.07 1.15 8.13 -51.93 -0.42 0.73 16 37 H 0.07 1.10 8.13 -51.93 -0.42 0.68 16 38 H 0.08 1.28 8.14 -51.93 -0.42 0.85 16 39 H 0.09 1.55 7.77 -51.93 -0.40 1.14 16 40 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 41 H 0.11 2.15 7.76 -52.49 -0.41 1.75 16 42 H 0.11 1.56 8.06 -52.49 -0.42 1.14 16 43 H 0.10 1.47 8.06 -52.49 -0.42 1.05 16 44 H 0.11 1.63 8.06 -52.49 -0.42 1.21 16 45 H 0.11 2.36 7.95 -52.49 -0.42 1.94 16 LS Contribution 387.45 15.07 5.84 5.84 Total: -1.00 -33.09 387.45 -8.50 -41.59 By element: Atomic # 1 Polarization: 9.57 SS G_CDS: -6.61 Total: 2.95 kcal Atomic # 6 Polarization: -13.07 SS G_CDS: -2.92 Total: -16.00 kcal Atomic # 7 Polarization: -33.87 SS G_CDS: 0.86 Total: -33.00 kcal Atomic # 8 Polarization: -17.51 SS G_CDS: -0.65 Total: -18.15 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -33.09 -8.50 -41.59 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000837694748.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.653 kcal (2) G-P(sol) polarization free energy of solvation -33.086 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.502 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.588 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds