Wall clock time and date at job start Tue Mar 31 2020 15:34:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30842 * 125.89820 * 2 1 4 4 N 1.40085 * 108.20261 * 180.02562 * 3 2 1 5 5 C 1.46497 * 126.03545 * 180.02562 * 4 3 2 6 6 C 1.34941 * 107.92866 * 0.27098 * 4 3 2 7 7 C 1.35322 * 107.74550 * 359.57030 * 6 4 3 8 8 C 1.50702 * 126.04314 * 180.15834 * 7 6 4 9 9 O 1.45199 * 109.46957 * 0.31754 * 8 7 6 10 10 C 1.34227 * 117.00356 * 180.02562 * 9 8 7 11 11 O 1.20828 * 119.99342 * 359.97438 * 10 9 8 12 12 C 1.50697 * 120.00611 * 180.02562 * 10 9 8 13 13 C 1.53000 * 109.47526 * 179.97438 * 12 10 9 14 14 H 1.09004 * 109.46647 * 54.99852 * 13 12 10 15 15 C 1.50699 * 109.46854 * 294.99944 * 13 12 10 16 16 H 1.07999 * 119.99983 * 325.83355 * 15 13 12 17 17 C 1.37874 * 119.99635 * 145.84293 * 15 13 12 18 18 N 1.31513 * 120.00706 * 6.10660 * 17 15 13 19 19 Si 1.86807 * 119.99757 * 186.11473 * 17 15 13 20 20 H 1.48491 * 109.47458 * 89.99554 * 19 17 15 21 21 H 1.48498 * 109.47078 * 209.99798 * 19 17 15 22 22 H 1.48506 * 109.46823 * 329.99463 * 19 17 15 23 23 C 1.50699 * 109.47319 * 174.99384 * 13 12 10 24 24 C 1.38239 * 119.99634 * 63.45957 * 23 13 12 25 25 C 1.38237 * 119.99757 * 179.81058 * 24 23 13 26 26 C 1.38231 * 119.99980 * 0.39398 * 25 24 23 27 27 C 1.38238 * 120.00285 * 359.86200 * 26 25 24 28 28 C 1.38232 * 120.00069 * 243.73733 * 23 13 12 29 29 H 1.08995 * 109.47333 * 89.96790 * 1 2 3 30 30 H 1.09000 * 109.47211 * 209.97004 * 1 2 3 31 31 H 1.09002 * 109.47041 * 329.96893 * 1 2 3 32 32 H 1.08997 * 109.47238 * 90.02525 * 5 4 3 33 33 H 1.09007 * 109.47401 * 210.03152 * 5 4 3 34 34 H 1.09000 * 109.47206 * 330.02796 * 5 4 3 35 35 H 1.08001 * 126.12911 * 179.73538 * 6 4 3 36 36 H 1.08996 * 109.46573 * 120.31123 * 8 7 6 37 37 H 1.09000 * 109.47303 * 240.31373 * 8 7 6 38 38 H 1.09007 * 109.46480 * 299.99360 * 12 10 9 39 39 H 1.08994 * 109.47150 * 59.99037 * 12 10 9 40 40 H 0.97000 * 120.00162 * 180.02562 * 18 17 15 41 41 H 1.08000 * 120.00209 * 359.97438 * 24 23 13 42 42 H 1.08002 * 119.99710 * 180.23227 * 25 24 23 43 43 H 1.08001 * 120.00185 * 179.83470 * 26 25 24 44 44 H 1.07996 * 120.00475 * 179.97438 * 27 26 25 45 45 H 1.07999 * 120.00195 * 359.97438 * 28 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2742 1.0599 0.0000 4 7 3.6088 0.6341 -0.0006 5 6 4.7899 1.5007 -0.0003 6 6 3.6143 -0.7153 -0.0070 7 6 2.3271 -1.1330 -0.0007 8 6 1.8599 -2.5658 -0.0012 9 8 3.0113 -3.4503 -0.0018 10 6 2.7660 -4.7700 -0.0028 11 8 1.6268 -5.1726 -0.0026 12 6 3.9113 -5.7494 -0.0030 13 6 3.3615 -7.1772 -0.0035 14 1 2.6809 -7.3041 -0.8455 15 6 2.6205 -7.4306 1.2840 16 1 2.9597 -6.9725 2.2014 17 6 1.5097 -8.2473 1.2908 18 7 1.1668 -8.9003 0.2020 19 14 0.4916 -8.4263 2.8468 20 1 -0.5750 -7.3933 2.8620 21 1 -0.1262 -9.7762 2.8815 22 1 1.3668 -8.2518 4.0338 23 6 4.5018 -8.1546 -0.1277 24 6 5.4589 -8.2299 0.8670 25 6 6.5028 -9.1293 0.7550 26 6 6.5940 -9.9474 -0.3555 27 6 5.6399 -9.8684 -1.3526 28 6 4.5939 -8.9717 -1.2388 29 1 -0.3634 0.0006 -1.0276 30 1 -0.3633 -0.8902 0.5134 31 1 -0.3633 0.8897 0.5143 32 1 5.0833 1.7146 1.0274 33 1 5.6091 0.9987 -0.5151 34 1 4.5561 2.4338 -0.5130 35 1 4.4891 -1.3485 -0.0131 36 1 1.2591 -2.7521 0.8890 37 1 1.2584 -2.7515 -0.8910 38 1 4.5217 -5.5944 -0.8928 39 1 4.5211 -5.5955 0.8872 40 1 0.3851 -9.4746 0.2067 41 1 5.3896 -7.5881 1.7328 42 1 7.2484 -9.1907 1.5338 43 1 7.4110 -10.6482 -0.4443 44 1 5.7114 -10.5073 -2.2204 45 1 3.8484 -8.9100 -2.0178 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000837694748.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:34:43 Heat of formation + Delta-G solvation = -7.022611 kcal Electronic energy + Delta-G solvation = -27023.913861 eV Core-core repulsion = 23200.349045 eV Total energy + Delta-G solvation = -3823.564816 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.32018 -41.19371 -39.83734 -37.50388 -35.79066 -35.04091 -33.47079 -32.28801 -31.47380 -30.61263 -30.39077 -28.24362 -27.36963 -25.46795 -24.54826 -23.14426 -22.41141 -21.41596 -20.92701 -20.49379 -18.57235 -18.34491 -17.81944 -17.41897 -17.24504 -16.74066 -16.46139 -16.34261 -15.62715 -15.46146 -15.18114 -14.87178 -14.58118 -14.37460 -14.16211 -14.00789 -13.97224 -13.64480 -13.56807 -13.48027 -13.17378 -13.00393 -12.96630 -12.84464 -12.72575 -12.54670 -12.46023 -11.81561 -11.79817 -11.72074 -11.67502 -11.33916 -11.13260 -10.92123 -10.45007 -10.22368 -9.51193 -9.35960 -9.18559 -8.05103 -6.08730 0.80882 0.84923 0.85284 1.37967 1.42316 1.46909 1.56351 1.59588 1.62066 1.87934 2.46701 3.19884 3.36501 3.49252 3.87327 4.05154 4.16346 4.26372 4.27676 4.37824 4.37982 4.41120 4.43394 4.45171 4.47805 4.56312 4.60173 4.69627 4.74251 4.76021 4.88414 4.95600 4.97462 5.03031 5.05640 5.21444 5.39293 5.51616 5.58446 5.63162 5.68721 5.79135 5.86815 5.96916 6.07186 6.16780 6.40605 6.48474 6.65490 6.99260 7.14814 7.55510 9.04287 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.011912 B = 0.003171 C = 0.002673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2349.963440 B = 8829.125165 C =10472.814893 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.077 3.923 3 N -0.326 5.326 4 N -0.379 5.379 5 C 0.093 3.907 6 C 0.087 3.913 7 C -0.268 4.268 8 C 0.155 3.845 9 O -0.360 6.360 10 C 0.462 3.538 11 O -0.514 6.514 12 C -0.089 4.089 13 C 0.079 3.921 14 H 0.030 0.970 15 C -0.495 4.495 16 H 0.051 0.949 17 C 0.028 3.972 18 N -0.914 5.914 19 Si 0.932 3.068 20 H -0.287 1.287 21 H -0.287 1.287 22 H -0.263 1.263 23 C -0.045 4.045 24 C -0.127 4.127 25 C -0.127 4.127 26 C -0.147 4.147 27 C -0.129 4.129 28 C -0.141 4.141 29 H 0.089 0.911 30 H 0.081 0.919 31 H 0.083 0.917 32 H 0.087 0.913 33 H 0.115 0.885 34 H 0.093 0.907 35 H 0.202 0.798 36 H 0.064 0.936 37 H 0.068 0.932 38 H 0.105 0.895 39 H 0.109 0.891 40 H 0.255 0.745 41 H 0.118 0.882 42 H 0.140 0.860 43 H 0.142 0.858 44 H 0.131 0.869 45 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.891 14.772 -1.614 18.423 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.089 4.089 3 N -0.149 5.149 4 N -0.160 5.160 5 C -0.046 4.046 6 C -0.061 4.061 7 C -0.279 4.279 8 C 0.080 3.920 9 O -0.278 6.278 10 C 0.305 3.695 11 O -0.400 6.400 12 C -0.126 4.126 13 C 0.060 3.940 14 H 0.048 0.952 15 C -0.532 4.532 16 H 0.069 0.931 17 C -0.171 4.171 18 N -0.553 5.553 19 Si 0.759 3.241 20 H -0.213 1.213 21 H -0.213 1.213 22 H -0.188 1.188 23 C -0.046 4.046 24 C -0.145 4.145 25 C -0.145 4.145 26 C -0.165 4.165 27 C -0.147 4.147 28 C -0.160 4.160 29 H 0.108 0.892 30 H 0.099 0.901 31 H 0.102 0.898 32 H 0.106 0.894 33 H 0.133 0.867 34 H 0.112 0.888 35 H 0.219 0.781 36 H 0.082 0.918 37 H 0.086 0.914 38 H 0.123 0.877 39 H 0.127 0.873 40 H 0.064 0.936 41 H 0.136 0.864 42 H 0.158 0.842 43 H 0.160 0.840 44 H 0.149 0.851 45 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 10.586 15.954 -1.668 19.219 hybrid contribution -1.429 -1.222 0.700 2.006 sum 9.157 14.732 -0.968 17.373 Atomic orbital electron populations 1.20319 0.85075 1.04080 1.04054 1.22491 0.98089 0.89254 0.99051 1.77223 0.87653 1.22948 1.27114 1.48752 1.05853 1.05232 1.56191 1.22243 0.82693 0.94897 1.04786 1.22677 0.99736 0.84860 0.98792 1.19746 0.93866 0.93789 1.20507 1.20776 0.85882 0.83725 1.01604 1.86394 1.38797 1.17771 1.84812 1.24142 0.91734 0.81604 0.71991 1.90718 1.25394 1.79344 1.44529 1.21520 0.93817 0.92293 1.04988 1.17703 0.90888 0.87594 0.97818 0.95153 1.21032 1.10538 1.27782 0.93896 0.93107 1.25451 0.98289 0.95481 0.97889 1.70036 1.26573 1.29661 1.29043 0.85958 0.79662 0.76736 0.81708 1.21340 1.21339 1.18759 1.20444 0.93950 0.97268 0.92890 1.21066 0.94787 1.00225 0.98377 1.21369 0.98429 0.96089 0.98586 1.21268 0.99971 1.00711 0.94522 1.21286 0.94854 0.98530 1.00022 1.21110 0.98309 0.98188 0.98357 0.89247 0.90064 0.89798 0.89435 0.86677 0.88790 0.78107 0.91761 0.91397 0.87669 0.87327 0.93612 0.86442 0.84187 0.83973 0.85078 0.88583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.56 10.26 71.24 0.73 -0.83 16 2 C 0.08 2.02 7.22 43.10 0.31 2.34 16 3 N -0.33 -8.70 12.58 -47.38 -0.60 -9.29 16 4 N -0.38 -8.24 4.01 -369.57 -1.48 -9.73 16 5 C 0.09 1.03 11.47 127.77 1.47 2.50 16 6 C 0.09 2.01 10.82 83.54 0.90 2.91 16 7 C -0.27 -7.33 6.08 -20.14 -0.12 -7.46 16 8 C 0.16 4.82 5.65 71.24 0.40 5.23 16 9 O -0.36 -12.02 9.51 -51.39 -0.49 -12.51 16 10 C 0.46 18.76 7.71 71.23 0.55 19.31 16 11 O -0.51 -25.65 14.73 21.96 0.32 -25.32 16 12 C -0.09 -3.35 5.06 29.85 0.15 -3.20 16 13 C 0.08 3.74 1.67 -12.29 -0.02 3.72 16 14 H 0.03 1.69 6.98 -2.38 -0.02 1.68 16 15 C -0.49 -26.37 6.37 25.60 0.16 -26.21 16 16 H 0.05 2.66 7.82 -2.91 -0.02 2.64 16 17 C 0.03 1.60 5.45 84.65 0.46 2.06 16 18 N -0.91 -54.72 12.87 21.45 0.28 -54.44 16 19 Si 0.93 45.59 29.54 68.60 2.03 47.61 16 20 H -0.29 -14.23 7.11 99.48 0.71 -13.53 16 21 H -0.29 -13.88 7.11 99.48 0.71 -13.17 16 22 H -0.26 -12.21 7.11 99.48 0.71 -11.50 16 23 C -0.04 -1.94 4.77 -19.87 -0.09 -2.03 16 24 C -0.13 -4.75 8.86 22.27 0.20 -4.56 16 25 C -0.13 -3.98 10.05 22.27 0.22 -3.76 16 26 C -0.15 -4.41 10.05 22.27 0.22 -4.19 16 27 C -0.13 -4.38 10.05 22.27 0.22 -4.15 16 28 C -0.14 -5.86 9.67 22.27 0.22 -5.64 16 29 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 30 H 0.08 1.60 7.96 -2.39 -0.02 1.58 16 31 H 0.08 1.50 8.14 -2.39 -0.02 1.48 16 32 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16 33 H 0.11 0.66 8.14 -2.38 -0.02 0.64 16 34 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 35 H 0.20 3.65 7.84 -2.91 -0.02 3.62 16 36 H 0.06 2.09 8.13 -2.39 -0.02 2.08 16 37 H 0.07 2.14 8.13 -2.39 -0.02 2.13 16 38 H 0.11 3.37 8.14 -2.38 -0.02 3.35 16 39 H 0.11 3.66 7.77 -2.39 -0.02 3.64 16 40 H 0.25 14.80 8.31 -92.71 -0.77 14.03 16 41 H 0.12 4.23 7.76 -2.91 -0.02 4.20 16 42 H 0.14 3.42 8.06 -2.91 -0.02 3.40 16 43 H 0.14 3.22 8.06 -2.91 -0.02 3.20 16 44 H 0.13 3.70 8.06 -2.91 -0.02 3.67 16 45 H 0.10 4.20 7.95 -2.91 -0.02 4.18 16 Total: -1.00 -74.13 387.45 7.02 -67.11 By element: Atomic # 1 Polarization: 19.55 SS G_CDS: 0.98 Total: 20.53 kcal Atomic # 6 Polarization: -29.94 SS G_CDS: 5.98 Total: -23.96 kcal Atomic # 7 Polarization: -71.66 SS G_CDS: -1.80 Total: -73.46 kcal Atomic # 8 Polarization: -37.67 SS G_CDS: -0.16 Total: -37.83 kcal Atomic # 14 Polarization: 45.59 SS G_CDS: 2.03 Total: 47.61 kcal Total: -74.13 7.02 -67.11 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000837694748.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.090 kcal (2) G-P(sol) polarization free energy of solvation -74.135 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.045 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.112 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.023 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds