Wall clock time and date at job start Tue Mar 31 2020 15:36:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50705 * 110.86103 * 2 1 4 4 O 1.21274 * 119.99760 * 266.11919 * 3 2 1 5 5 N 1.34773 * 119.99695 * 86.12157 * 3 2 1 6 6 C 1.46511 * 119.99778 * 185.03728 * 5 3 2 7 7 C 1.53000 * 109.47158 * 184.73138 * 6 5 3 8 8 C 1.50699 * 115.54726 * 64.73701 * 7 6 5 9 9 H 1.07996 * 120.00231 * 267.05128 * 8 7 6 10 10 C 1.37880 * 119.99735 * 87.05571 * 8 7 6 11 11 N 1.31514 * 119.99736 * 178.92952 * 10 8 7 12 12 Si 1.86799 * 119.99931 * 358.92789 * 10 8 7 13 13 H 1.48493 * 109.47225 * 91.51622 * 12 10 8 14 14 H 1.48505 * 109.46904 * 211.51095 * 12 10 8 15 15 H 1.48497 * 109.47293 * 331.51392 * 12 10 8 16 16 C 1.52993 * 117.49851 * 279.06884 * 7 6 5 17 17 C 1.52999 * 117.49767 * 210.40821 * 7 6 5 18 18 C 1.54737 * 110.97389 * 236.15839 * 2 1 3 19 19 C 1.51694 * 102.54961 * 217.66701 * 18 2 1 20 20 C 1.47645 * 125.86611 * 195.34797 * 19 18 2 21 21 C 1.39617 * 120.14530 * 359.74854 * 20 19 18 22 22 C 1.37958 * 119.84328 * 179.79071 * 21 20 19 23 23 C 1.38352 * 120.14786 * 0.46416 * 22 21 20 24 24 C 1.38356 * 120.30806 * 359.79013 * 23 22 21 25 25 C 1.37953 * 120.14462 * 359.97438 * 24 23 22 26 26 N 1.29085 * 108.26884 * 15.38836 * 19 18 2 27 27 O 1.41394 * 112.87248 * 0.32429 * 26 19 18 28 28 H 1.08997 * 109.47019 * 297.65634 * 1 2 3 29 29 H 1.08996 * 109.47224 * 177.65458 * 1 2 3 30 30 H 1.09003 * 109.47079 * 57.65292 * 1 2 3 31 31 H 0.96994 * 120.00667 * 5.04036 * 5 3 2 32 32 H 1.09001 * 109.46600 * 304.73335 * 6 5 3 33 33 H 1.09003 * 109.46923 * 64.73382 * 6 5 3 34 34 H 0.96999 * 119.99636 * 179.97438 * 11 10 8 35 35 H 1.09006 * 117.50375 * 0.02562 * 16 7 6 36 36 H 1.09002 * 117.50223 * 145.02088 * 16 7 6 37 37 H 1.08997 * 117.49796 * 214.97883 * 17 7 6 38 38 H 1.08993 * 117.49668 * 359.97438 * 17 7 6 39 39 H 1.08995 * 110.79319 * 335.92889 * 18 2 1 40 40 H 1.08997 * 110.79205 * 99.40135 * 18 2 1 41 41 H 1.07998 * 120.07404 * 0.02562 * 21 20 19 42 42 H 1.07997 * 119.91770 * 180.23312 * 22 21 20 43 43 H 1.08004 * 119.84813 * 179.76348 * 23 22 21 44 44 H 1.07996 * 119.92627 * 179.97438 * 24 23 22 45 45 H 1.08007 * 120.07455 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0666 1.4083 0.0000 4 8 2.3490 1.9495 -1.0479 5 7 2.2328 2.0660 1.1645 6 6 2.6490 3.4708 1.1595 7 6 2.8768 3.9404 2.5977 8 6 4.0062 3.2638 3.3311 9 1 3.8100 2.3938 3.9401 10 6 5.2899 3.7556 3.2245 11 7 6.2720 3.1778 3.8813 12 14 5.6340 5.2424 2.1473 13 1 5.5281 6.4792 2.9622 14 1 7.0033 5.1378 1.5821 15 1 4.6444 5.2921 1.0413 16 6 1.6463 4.3432 3.4126 17 6 2.6156 5.4154 2.9089 18 6 2.0838 -0.8046 -1.2001 19 6 3.2963 -1.4939 -0.6033 20 6 4.3862 -2.1381 -1.3629 21 6 4.3547 -2.1526 -2.7587 22 6 5.3786 -2.7525 -3.4622 23 6 6.4299 -3.3473 -2.7876 24 6 6.4647 -3.3412 -1.4045 25 6 5.4499 -2.7406 -0.6886 26 7 3.2110 -1.4212 0.6826 27 8 2.0461 -0.7490 1.1190 28 1 -0.3633 0.4770 0.9102 29 1 -0.3633 -1.0268 -0.0421 30 1 -0.3633 0.5499 -0.8682 31 1 2.0769 1.6095 2.0060 32 1 3.5744 3.5734 0.5927 33 1 1.8708 4.0786 0.6978 34 1 7.1751 3.5236 3.8060 35 1 0.6742 4.2732 2.9243 36 1 1.6536 4.1192 4.4793 37 1 3.2604 5.8964 3.6445 38 1 2.2819 6.0513 2.0890 39 1 1.3536 -1.5365 -1.5453 40 1 2.3778 -0.1377 -2.0105 41 1 3.5327 -1.6919 -3.2863 42 1 5.3574 -2.7611 -4.5420 43 1 7.2270 -3.8189 -3.3433 44 1 7.2881 -3.8077 -0.8842 45 1 5.4779 -2.7369 0.3910 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000857201569.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:36:06 Heat of formation + Delta-G solvation = 36.309028 kcal Electronic energy + Delta-G solvation = -27916.114561 eV Core-core repulsion = 24094.428746 eV Total energy + Delta-G solvation = -3821.685815 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.92023 -39.26543 -38.40960 -37.02438 -34.11524 -33.33406 -32.54813 -32.09750 -31.17433 -30.25507 -27.32990 -26.98305 -25.37141 -23.75018 -23.09983 -22.34511 -21.70924 -20.37853 -19.63667 -19.15030 -17.81952 -16.82636 -16.36969 -16.15835 -15.62116 -15.42776 -15.22930 -14.92425 -14.58826 -14.57123 -13.95913 -13.72059 -13.63869 -13.43036 -13.17662 -13.14815 -12.90445 -12.71955 -12.49844 -12.38967 -12.29149 -12.00336 -11.54386 -11.42011 -11.35827 -11.15345 -10.79063 -10.74130 -10.52359 -10.31990 -10.19791 -9.70285 -9.39639 -9.19629 -9.16030 -8.67534 -8.63026 -8.54924 -8.36793 -6.12194 -4.16605 0.58195 1.20532 2.15933 2.81571 2.93988 3.28655 3.38923 3.41604 3.48630 3.65748 3.91084 4.20621 4.33812 4.41409 4.71965 4.75275 4.76822 4.86311 4.90638 5.07094 5.16178 5.18694 5.27870 5.33983 5.38554 5.44626 5.51819 5.65199 5.69151 5.78920 5.84004 5.88091 5.99987 6.05111 6.16584 6.23764 6.25355 6.29996 6.40460 6.45548 6.68460 6.71079 6.95556 7.03488 7.07546 7.31148 7.69084 8.04380 8.44469 8.57883 8.89641 9.50256 10.99273 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.011971 B = 0.003908 C = 0.003317 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2338.413013 B = 7162.415941 C = 8439.925633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.051 3.949 3 C 0.503 3.497 4 O -0.549 6.549 5 N -0.682 5.682 6 C 0.153 3.847 7 C -0.016 4.016 8 C -0.489 4.489 9 H 0.079 0.921 10 C 0.081 3.919 11 N -0.893 5.893 12 Si 0.877 3.123 13 H -0.278 1.278 14 H -0.293 1.293 15 H -0.258 1.258 16 C -0.178 4.178 17 C -0.192 4.192 18 C -0.131 4.131 19 C 0.120 3.880 20 C -0.037 4.037 21 C -0.086 4.086 22 C -0.125 4.125 23 C -0.103 4.103 24 C -0.123 4.123 25 C -0.078 4.078 26 N -0.271 5.271 27 O -0.175 6.175 28 H 0.078 0.922 29 H 0.077 0.923 30 H 0.081 0.919 31 H 0.411 0.589 32 H 0.067 0.933 33 H 0.044 0.956 34 H 0.265 0.735 35 H 0.072 0.928 36 H 0.089 0.911 37 H 0.091 0.909 38 H 0.074 0.926 39 H 0.110 0.890 40 H 0.120 0.880 41 H 0.130 0.870 42 H 0.128 0.872 43 H 0.125 0.875 44 H 0.129 0.871 45 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.434 -12.060 -13.697 19.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.007 3.993 3 C 0.286 3.714 4 O -0.429 6.429 5 N -0.330 5.330 6 C 0.030 3.970 7 C -0.017 4.017 8 C -0.526 4.526 9 H 0.097 0.903 10 C -0.122 4.122 11 N -0.529 5.529 12 Si 0.705 3.295 13 H -0.204 1.204 14 H -0.220 1.220 15 H -0.182 1.182 16 C -0.215 4.215 17 C -0.230 4.230 18 C -0.170 4.170 19 C -0.069 4.069 20 C -0.038 4.038 21 C -0.106 4.106 22 C -0.143 4.143 23 C -0.122 4.122 24 C -0.141 4.141 25 C -0.097 4.097 26 N -0.010 5.010 27 O -0.195 6.195 28 H 0.097 0.903 29 H 0.096 0.904 30 H 0.100 0.900 31 H 0.246 0.754 32 H 0.085 0.915 33 H 0.062 0.938 34 H 0.075 0.925 35 H 0.091 0.909 36 H 0.107 0.893 37 H 0.109 0.891 38 H 0.092 0.908 39 H 0.129 0.871 40 H 0.138 0.862 41 H 0.148 0.852 42 H 0.146 0.854 43 H 0.143 0.857 44 H 0.147 0.853 45 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -6.719 -11.862 -13.148 18.939 hybrid contribution -0.060 1.048 -0.769 1.301 sum -6.779 -10.814 -13.917 18.883 Atomic orbital electron populations 1.21766 0.89161 1.03955 1.04266 1.23210 0.97707 0.90871 0.87516 1.20349 0.78948 0.87373 0.84752 1.90659 1.51722 1.68821 1.31667 1.45796 1.65636 1.13278 1.08324 1.21252 0.98452 0.79536 0.97784 1.19602 0.96727 0.93773 0.91579 1.20191 0.89388 1.14206 1.28858 0.90268 1.24961 0.95954 0.96663 0.94673 1.69891 1.00601 1.40881 1.41566 0.86884 0.77470 0.83311 0.81822 1.20366 1.22027 1.18242 1.22850 0.93295 1.05055 1.00317 1.22951 1.04208 0.92774 1.03057 1.22924 0.94684 0.99106 1.00313 1.24291 0.94734 0.95573 0.92310 1.17804 0.93144 1.00425 0.92456 1.21247 0.98985 0.98076 0.92303 1.21067 0.94283 0.98784 1.00127 1.21342 0.98073 0.98287 0.94527 1.21149 0.98706 0.99952 0.94251 1.21438 0.92467 0.94870 1.00965 1.78522 1.00430 1.09279 1.12764 1.91315 1.36886 1.60591 1.30754 0.90334 0.90433 0.89970 0.75351 0.91462 0.93774 0.92535 0.90907 0.89283 0.89093 0.90778 0.87150 0.86209 0.85235 0.85375 0.85671 0.85297 0.84731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.46 8.97 37.16 0.33 -1.13 16 2 C 0.05 0.76 1.25 -90.86 -0.11 0.65 16 3 C 0.50 9.46 6.81 -10.98 -0.07 9.39 16 4 O -0.55 -11.59 15.80 5.56 0.09 -11.50 16 5 N -0.68 -13.65 5.41 -60.29 -0.33 -13.98 16 6 C 0.15 3.33 5.15 -4.04 -0.02 3.31 16 7 C -0.02 -0.35 0.81 -155.66 -0.13 -0.48 16 8 C -0.49 -13.37 9.28 -34.44 -0.32 -13.69 16 9 H 0.08 2.37 8.06 -52.49 -0.42 1.94 16 10 C 0.08 2.31 5.47 -17.82 -0.10 2.21 16 11 N -0.89 -27.23 13.96 55.43 0.77 -26.46 16 12 Si 0.88 21.96 24.86 -169.99 -4.23 17.74 16 13 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 14 H -0.29 -7.47 7.11 56.52 0.40 -7.07 16 15 H -0.26 -6.21 5.75 56.52 0.32 -5.88 16 16 C -0.18 -3.46 9.96 -26.70 -0.27 -3.73 16 17 C -0.19 -3.99 7.57 -26.69 -0.20 -4.19 16 18 C -0.13 -1.68 5.32 -26.48 -0.14 -1.82 16 19 C 0.12 1.79 7.16 -79.42 -0.57 1.22 16 20 C -0.04 -0.48 5.87 -105.03 -0.62 -1.10 16 21 C -0.09 -0.90 9.61 -39.17 -0.38 -1.27 16 22 C -0.12 -1.11 10.03 -39.64 -0.40 -1.50 16 23 C -0.10 -0.91 10.04 -39.50 -0.40 -1.31 16 24 C -0.12 -1.25 10.03 -39.64 -0.40 -1.65 16 25 C -0.08 -0.98 9.69 -39.17 -0.38 -1.36 16 26 N -0.27 -4.75 12.12 35.30 0.43 -4.32 16 27 O -0.18 -3.03 11.38 -11.37 -0.13 -3.16 16 28 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 29 H 0.08 0.69 8.10 -51.93 -0.42 0.27 16 30 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.41 8.10 7.96 -40.82 -0.33 7.78 16 32 H 0.07 1.64 6.67 -51.93 -0.35 1.30 16 33 H 0.04 0.89 8.10 -51.93 -0.42 0.47 16 34 H 0.26 7.63 8.31 -40.82 -0.34 7.30 16 35 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 36 H 0.09 1.74 8.14 -51.93 -0.42 1.32 16 37 H 0.09 1.98 7.24 -51.93 -0.38 1.61 16 38 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 39 H 0.11 1.03 7.88 -51.93 -0.41 0.62 16 40 H 0.12 1.57 6.83 -51.93 -0.35 1.22 16 41 H 0.13 1.09 7.38 -52.49 -0.39 0.71 16 42 H 0.13 0.80 8.06 -52.49 -0.42 0.38 16 43 H 0.13 0.78 8.06 -52.48 -0.42 0.36 16 44 H 0.13 1.04 8.06 -52.49 -0.42 0.62 16 45 H 0.13 1.79 7.84 -52.48 -0.41 1.38 16 LS Contribution 375.73 15.07 5.66 5.66 Total: -1.00 -33.56 375.73 -8.36 -41.92 By element: Atomic # 1 Polarization: 17.03 SS G_CDS: -6.47 Total: 10.56 kcal Atomic # 6 Polarization: -12.30 SS G_CDS: -4.16 Total: -16.46 kcal Atomic # 7 Polarization: -45.64 SS G_CDS: 0.88 Total: -44.76 kcal Atomic # 8 Polarization: -14.62 SS G_CDS: -0.04 Total: -14.66 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -4.23 Total: 17.74 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -33.56 -8.36 -41.92 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000857201569.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.227 kcal (2) G-P(sol) polarization free energy of solvation -33.560 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.667 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.358 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.918 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.309 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds