Wall clock time and date at job start Tue Mar 31 2020 15:36:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50698 * 119.99272 * 2 1 4 4 N 1.46505 * 109.46879 * 125.81444 * 3 2 1 5 5 C 1.46505 * 119.99634 * 265.03915 * 4 3 2 6 6 C 1.50690 * 109.47099 * 276.16663 * 5 4 3 7 7 H 1.08000 * 120.00673 * 0.02562 * 6 5 4 8 8 C 1.37885 * 120.00030 * 179.97438 * 6 5 4 9 9 N 1.31506 * 120.00122 * 180.02562 * 8 6 5 10 10 Si 1.86798 * 119.99653 * 0.02562 * 8 6 5 11 11 H 1.48495 * 109.47363 * 89.99730 * 10 8 6 12 12 H 1.48505 * 109.46824 * 209.99786 * 10 8 6 13 13 H 1.48504 * 109.47278 * 329.99750 * 10 8 6 14 14 C 1.34771 * 120.00105 * 85.04107 * 4 3 2 15 15 O 1.21279 * 120.00176 * 5.13244 * 14 4 3 16 16 C 1.50704 * 119.99905 * 185.13286 * 14 4 3 17 17 C 1.53006 * 110.85856 * 283.67963 * 16 14 4 18 18 C 1.54736 * 110.97566 * 159.88318 * 16 14 4 19 19 C 1.51686 * 102.55205 * 217.65999 * 18 16 14 20 20 C 1.47642 * 125.86582 * 195.38842 * 19 18 16 21 21 C 1.39612 * 120.14611 * 180.02562 * 20 19 18 22 22 C 1.37952 * 119.84671 * 180.23031 * 21 20 19 23 23 C 1.38366 * 120.14969 * 359.47549 * 22 21 20 24 24 C 1.38353 * 120.29802 * 0.55289 * 23 22 21 25 25 C 1.37955 * 120.15190 * 359.70023 * 24 23 22 26 26 N 1.29083 * 108.26566 * 15.65905 * 19 18 16 27 27 O 1.41384 * 112.87808 * 359.87572 * 26 19 18 28 28 H 1.07991 * 120.00686 * 359.97438 * 1 2 3 29 29 H 1.08003 * 119.99507 * 180.02562 * 1 2 3 30 30 H 1.07995 * 120.00207 * 180.02562 * 2 1 3 31 31 H 1.08998 * 109.47813 * 5.81029 * 3 2 1 32 32 H 1.09006 * 109.47272 * 245.80689 * 3 2 1 33 33 H 1.08997 * 109.47125 * 36.17134 * 5 4 3 34 34 H 1.08999 * 109.46440 * 156.16552 * 5 4 3 35 35 H 0.97008 * 120.00088 * 180.02562 * 9 8 6 36 36 H 1.08995 * 109.47349 * 301.43792 * 17 16 14 37 37 H 1.09001 * 109.46506 * 61.43901 * 17 16 14 38 38 H 1.08993 * 109.47163 * 181.43668 * 17 16 14 39 39 H 1.09002 * 110.79568 * 99.39213 * 18 16 14 40 40 H 1.08999 * 110.95502 * 336.00493 * 18 16 14 41 41 H 1.07998 * 120.07840 * 359.96405 * 21 20 19 42 42 H 1.08002 * 119.92941 * 179.72492 * 22 21 20 43 43 H 1.07997 * 119.84706 * 180.24993 * 23 22 21 44 44 H 1.07997 * 119.92406 * 179.72448 * 24 23 22 45 45 H 1.07997 * 120.07425 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 7 3.0075 1.3240 1.1201 5 6 2.6249 1.9462 2.3901 6 6 2.8685 3.4314 2.3154 7 1 3.2679 3.8684 1.4121 8 6 2.5804 4.2327 3.3999 9 7 2.7925 5.5289 3.3345 10 14 1.8889 3.4770 4.9620 11 1 3.0056 3.0884 5.8603 12 1 1.0223 4.4677 5.6495 13 1 1.0889 2.2741 4.6179 14 6 4.2279 0.7691 0.9822 15 8 4.5795 0.3375 -0.0953 16 6 5.1556 0.6850 2.1668 17 6 5.7860 2.0474 2.4630 18 6 6.2440 -0.3918 1.9427 19 6 6.3948 -1.0006 3.3237 20 6 7.5115 -1.8542 3.7756 21 6 7.5295 -2.3533 5.0793 22 6 8.5783 -3.1464 5.4965 23 6 9.6055 -3.4563 4.6228 24 6 9.5943 -2.9645 3.3297 25 6 8.5541 -2.1660 2.9010 26 7 5.3761 -0.6490 4.0343 27 8 4.4681 0.1707 3.3254 28 1 -0.5401 0.9352 0.0004 29 1 -0.5399 -0.9354 0.0004 30 1 1.8500 -0.9352 -0.0004 31 1 1.3596 2.1310 0.1040 32 1 2.6098 1.4094 -0.9374 33 1 1.5681 1.7604 2.5819 34 1 3.2209 1.5203 3.1973 35 1 2.5902 6.0926 4.0976 36 1 6.3335 2.3927 1.5862 37 1 5.0025 2.7645 2.7079 38 1 6.4707 1.9553 3.3060 39 1 7.1787 0.0647 1.6169 40 1 5.9098 -1.1402 1.2241 41 1 6.7262 -2.1157 5.7610 42 1 8.5958 -3.5296 6.5061 43 1 10.4222 -4.0808 4.9533 44 1 10.4014 -3.2065 2.6542 45 1 8.5464 -1.7832 1.8912 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000857266125.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:36:27 Heat of formation + Delta-G solvation = 43.297618 kcal Electronic energy + Delta-G solvation = -28279.721481 eV Core-core repulsion = 24458.338714 eV Total energy + Delta-G solvation = -3821.382767 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.78522 -39.33921 -38.41223 -35.74689 -34.04734 -33.29630 -32.26047 -31.95130 -31.16877 -30.21191 -28.21136 -27.04861 -26.10517 -23.69634 -23.16003 -22.61838 -21.78817 -20.12218 -19.81918 -18.66495 -17.19837 -17.02489 -16.45675 -16.04433 -15.86829 -15.61070 -15.01130 -14.93497 -14.69497 -14.22313 -13.98870 -13.71897 -13.60423 -13.55372 -13.31192 -12.97739 -12.72648 -12.48298 -12.22655 -11.97573 -11.88908 -11.85327 -11.62553 -11.44368 -11.40416 -11.14881 -10.96230 -10.86920 -10.66487 -10.51367 -10.20818 -9.93009 -9.62510 -9.35843 -9.21335 -9.04115 -8.69928 -8.60558 -7.87917 -6.23192 -4.23869 0.58464 1.15238 2.21542 2.44515 2.84788 3.21983 3.26447 3.31844 3.37464 3.59885 3.66128 4.14039 4.30513 4.40780 4.65124 4.71092 4.77180 4.85600 4.95840 5.10079 5.14134 5.17200 5.29113 5.31549 5.46213 5.47639 5.64707 5.73876 5.76943 5.84323 5.87072 6.08178 6.12696 6.14314 6.21348 6.24069 6.25706 6.28658 6.47918 6.66659 6.83453 6.85779 6.93752 6.98094 7.28737 7.42451 7.52051 7.98390 8.35576 8.61682 8.81412 9.36327 10.88243 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.012273 B = 0.003960 C = 0.003397 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2280.974345 B = 7068.534141 C = 8241.800102 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.157 4.157 3 C 0.143 3.857 4 N -0.570 5.570 5 C 0.196 3.804 6 C -0.541 4.541 7 H 0.080 0.920 8 C 0.081 3.919 9 N -0.888 5.888 10 Si 0.867 3.133 11 H -0.269 1.269 12 H -0.284 1.284 13 H -0.262 1.262 14 C 0.536 3.464 15 O -0.558 6.558 16 C 0.065 3.935 17 C -0.175 4.175 18 C -0.126 4.126 19 C 0.114 3.886 20 C -0.032 4.032 21 C -0.082 4.082 22 C -0.124 4.124 23 C -0.106 4.106 24 C -0.123 4.123 25 C -0.088 4.088 26 N -0.284 5.284 27 O -0.167 6.167 28 H 0.099 0.901 29 H 0.094 0.906 30 H 0.104 0.896 31 H 0.091 0.909 32 H 0.083 0.917 33 H 0.034 0.966 34 H 0.061 0.939 35 H 0.267 0.733 36 H 0.070 0.930 37 H 0.123 0.877 38 H 0.059 0.941 39 H 0.106 0.894 40 H 0.111 0.889 41 H 0.133 0.867 42 H 0.127 0.873 43 H 0.124 0.876 44 H 0.128 0.872 45 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.910 -15.697 0.262 18.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.177 4.177 3 C 0.020 3.980 4 N -0.298 5.298 5 C 0.075 3.925 6 C -0.579 4.579 7 H 0.098 0.902 8 C -0.123 4.123 9 N -0.525 5.525 10 Si 0.693 3.307 11 H -0.195 1.195 12 H -0.210 1.210 13 H -0.186 1.186 14 C 0.321 3.679 15 O -0.439 6.439 16 C 0.022 3.978 17 C -0.232 4.232 18 C -0.165 4.165 19 C -0.075 4.075 20 C -0.034 4.034 21 C -0.102 4.102 22 C -0.142 4.142 23 C -0.125 4.125 24 C -0.141 4.141 25 C -0.108 4.108 26 N -0.025 5.025 27 O -0.186 6.186 28 H 0.117 0.883 29 H 0.112 0.888 30 H 0.122 0.878 31 H 0.110 0.890 32 H 0.101 0.899 33 H 0.052 0.948 34 H 0.078 0.922 35 H 0.077 0.923 36 H 0.089 0.911 37 H 0.142 0.858 38 H 0.078 0.922 39 H 0.124 0.876 40 H 0.129 0.871 41 H 0.151 0.849 42 H 0.145 0.855 43 H 0.142 0.858 44 H 0.146 0.854 45 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 9.270 -15.681 0.824 18.235 hybrid contribution -0.083 -0.003 0.161 0.181 sum 9.187 -15.684 0.985 18.203 Atomic orbital electron populations 1.23791 0.95717 1.01696 1.01585 1.23364 0.96143 0.99189 0.98955 1.20501 0.91956 0.95105 0.90405 1.47842 1.12501 1.54148 1.15297 1.20265 0.97063 0.94159 0.81055 1.21312 1.44782 0.89695 1.02146 0.90223 1.24816 0.94527 0.94591 0.98405 1.69888 1.47298 1.03964 1.31359 0.86961 0.80162 0.79579 0.83973 1.19452 1.20998 1.18630 1.19734 0.81998 0.77884 0.88257 1.90630 1.75269 1.50619 1.27354 1.23004 0.91848 0.96519 0.86398 1.22452 1.03485 0.95297 1.01946 1.22820 1.00519 0.97878 0.95274 1.24219 0.94243 0.95540 0.93546 1.17854 0.92654 0.98256 0.94592 1.21400 0.98419 0.95550 0.94813 1.21127 0.94228 0.98753 1.00062 1.21326 0.98369 0.99022 0.93798 1.21082 0.98513 0.98143 0.96378 1.21295 0.92849 0.97195 0.99442 1.78340 1.00659 1.04975 1.18490 1.91416 1.30091 1.60472 1.36620 0.88266 0.88796 0.87838 0.89037 0.89875 0.94807 0.92171 0.92299 0.91137 0.85840 0.92177 0.87596 0.87116 0.84917 0.85478 0.85751 0.85385 0.85098 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.70 14.32 29.01 0.42 -2.29 16 2 C -0.16 -2.59 9.81 -36.03 -0.35 -2.94 16 3 C 0.14 2.65 5.86 -5.19 -0.03 2.62 16 4 N -0.57 -12.04 2.45 -176.43 -0.43 -12.47 16 5 C 0.20 4.53 3.62 -5.20 -0.02 4.51 16 6 C -0.54 -14.13 7.69 -34.44 -0.26 -14.39 16 7 H 0.08 2.28 8.06 -52.49 -0.42 1.86 16 8 C 0.08 2.19 5.47 -17.82 -0.10 2.09 16 9 N -0.89 -25.53 13.96 55.43 0.77 -24.76 16 10 Si 0.87 20.67 27.47 -169.99 -4.67 16.00 16 11 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 12 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 13 H -0.26 -6.07 6.54 56.52 0.37 -5.70 16 14 C 0.54 11.11 6.67 -10.99 -0.07 11.04 16 15 O -0.56 -11.94 15.52 5.56 0.09 -11.86 16 16 C 0.07 1.24 0.74 -90.85 -0.07 1.17 16 17 C -0.17 -3.32 8.75 37.16 0.33 -3.00 16 18 C -0.13 -1.93 5.04 -26.48 -0.13 -2.06 16 19 C 0.11 1.73 7.16 -79.42 -0.57 1.16 16 20 C -0.03 -0.40 5.87 -105.03 -0.62 -1.02 16 21 C -0.08 -0.93 9.69 -39.17 -0.38 -1.31 16 22 C -0.12 -1.10 10.03 -39.64 -0.40 -1.50 16 23 C -0.11 -0.84 10.04 -39.49 -0.40 -1.23 16 24 C -0.12 -1.01 10.03 -39.64 -0.40 -1.40 16 25 C -0.09 -0.87 9.61 -39.17 -0.38 -1.25 16 26 N -0.28 -5.15 12.12 35.30 0.43 -4.73 16 27 O -0.17 -3.44 9.08 -11.37 -0.10 -3.54 16 28 H 0.10 1.35 7.84 -52.49 -0.41 0.93 16 29 H 0.09 1.15 8.06 -52.48 -0.42 0.73 16 30 H 0.10 1.73 8.06 -52.49 -0.42 1.31 16 31 H 0.09 1.68 7.69 -51.93 -0.40 1.28 16 32 H 0.08 1.53 7.51 -51.93 -0.39 1.14 16 33 H 0.03 0.79 7.17 -51.93 -0.37 0.42 16 34 H 0.06 1.44 3.68 -51.93 -0.19 1.25 16 35 H 0.27 7.24 8.31 -40.82 -0.34 6.90 16 36 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 37 H 0.12 2.79 4.82 -51.93 -0.25 2.54 16 38 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 39 H 0.11 1.37 7.73 -51.93 -0.40 0.97 16 40 H 0.11 1.70 7.38 -51.93 -0.38 1.32 16 41 H 0.13 1.55 7.84 -52.49 -0.41 1.14 16 42 H 0.13 0.85 8.06 -52.49 -0.42 0.43 16 43 H 0.12 0.66 8.06 -52.49 -0.42 0.24 16 44 H 0.13 0.73 8.06 -52.49 -0.42 0.31 16 45 H 0.13 1.11 7.37 -52.49 -0.39 0.72 16 LS Contribution 373.70 15.07 5.63 5.63 Total: -1.00 -30.79 373.70 -7.86 -38.65 By element: Atomic # 1 Polarization: 13.01 SS G_CDS: -6.15 Total: 6.87 kcal Atomic # 6 Polarization: -6.37 SS G_CDS: -3.43 Total: -9.80 kcal Atomic # 7 Polarization: -42.72 SS G_CDS: 0.77 Total: -41.95 kcal Atomic # 8 Polarization: -15.38 SS G_CDS: -0.02 Total: -15.40 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -4.67 Total: 16.00 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -30.79 -7.86 -38.65 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000857266125.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.950 kcal (2) G-P(sol) polarization free energy of solvation -30.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.162 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.864 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.652 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.298 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds