Wall clock time and date at job start Tue Mar 31 2020 15:33:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.39867 * 125.90304 * 2 1 4 4 C 1.35314 * 107.92715 * 179.97438 * 3 2 1 5 5 N 1.34947 * 107.74188 * 0.02562 * 4 3 2 6 6 C 1.46507 * 126.03617 * 179.97438 * 5 4 3 7 7 C 1.53004 * 109.46871 * 125.00347 * 6 5 4 8 8 H 1.09007 * 109.46989 * 304.99946 * 7 6 5 9 9 C 1.52999 * 109.47262 * 65.00000 * 7 6 5 10 10 C 1.50695 * 109.46845 * 185.00161 * 7 6 5 11 11 O 1.20826 * 120.00326 * 359.97438 * 10 7 6 12 12 O 1.34234 * 119.99745 * 179.97438 * 10 7 6 13 13 C 1.45199 * 116.99872 * 179.97438 * 12 10 7 14 14 C 1.50699 * 109.47288 * 180.02562 * 13 12 10 15 15 C 1.38638 * 119.74919 * 269.73020 * 14 13 12 16 16 C 1.37621 * 120.24786 * 179.71976 * 15 14 13 17 17 C 1.40722 * 119.74226 * 0.56799 * 16 15 14 18 18 C 1.41390 * 120.24285 * 179.68440 * 17 16 15 19 19 H 1.07993 * 120.00484 * 155.31499 * 18 17 16 20 20 C 1.39952 * 119.99755 * 335.31028 * 18 17 16 21 21 N 1.30819 * 120.00285 * 342.23502 * 20 18 17 22 22 Si 1.86805 * 119.99730 * 162.23268 * 20 18 17 23 23 H 1.48503 * 109.46835 * 94.66540 * 22 20 18 24 24 H 1.48499 * 109.47053 * 214.66277 * 22 20 18 25 25 H 1.48494 * 109.47066 * 334.66691 * 22 20 18 26 26 C 1.40711 * 119.51066 * 359.70644 * 17 16 15 27 27 C 1.37619 * 119.75023 * 359.97438 * 26 17 16 28 28 N 1.30843 * 125.89989 * 180.30890 * 2 1 3 29 29 H 1.08996 * 109.47302 * 89.99784 * 1 2 3 30 30 H 1.09001 * 109.47505 * 209.99900 * 1 2 3 31 31 H 1.09007 * 109.47316 * 329.99732 * 1 2 3 32 32 H 1.07999 * 126.03712 * 359.97438 * 3 2 1 33 33 H 1.07996 * 126.13287 * 179.97438 * 4 3 2 34 34 H 1.09000 * 109.46971 * 5.00125 * 6 5 4 35 35 H 1.09000 * 109.47264 * 245.00119 * 6 5 4 36 36 H 1.08997 * 109.47194 * 60.00184 * 9 7 6 37 37 H 1.09000 * 109.46878 * 179.97438 * 9 7 6 38 38 H 1.08997 * 109.46867 * 299.99949 * 9 7 6 39 39 H 1.09001 * 109.47314 * 299.99961 * 13 12 10 40 40 H 1.08996 * 109.47249 * 60.00028 * 13 12 10 41 41 H 1.07995 * 119.87404 * 359.97438 * 15 14 13 42 42 H 1.07990 * 120.12656 * 180.27896 * 16 15 14 43 43 H 0.97005 * 120.00352 * 180.02562 * 21 20 18 44 44 H 1.07998 * 120.12535 * 179.97438 * 26 17 16 45 45 H 1.07997 * 119.87537 * 180.02562 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3271 1.1329 0.0000 4 6 3.6142 0.7153 0.0006 5 7 3.6087 -0.6341 0.0004 6 6 4.7899 -1.5008 0.0003 7 6 4.7114 -2.4699 1.1817 8 1 4.5860 -1.9062 2.1063 9 6 3.5194 -3.4101 0.9919 10 6 5.9817 -3.2774 1.2542 11 8 6.8595 -3.0968 0.4438 12 8 6.1380 -4.1974 2.2191 13 6 7.3867 -4.9382 2.2276 14 6 7.3816 -5.9184 3.3721 15 6 7.8743 -5.5337 4.6096 16 6 7.8693 -6.4187 5.6635 17 6 7.3725 -7.7222 5.4781 18 6 7.3685 -8.6422 6.5517 19 1 6.6643 -9.4610 6.5587 20 6 8.2771 -8.4918 7.6055 21 7 9.3379 -7.7416 7.4525 22 14 7.9752 -9.3622 9.2305 23 1 8.7071 -10.6543 9.2434 24 1 8.4574 -8.5090 10.3461 25 1 6.5211 -9.6155 9.3937 26 6 6.8802 -8.1034 4.2162 27 6 6.8889 -7.1997 3.1783 28 7 2.2741 -1.0599 -0.0057 29 1 -0.3634 0.0000 -1.0276 30 1 -0.3634 -0.8900 0.5138 31 1 -0.3634 0.8900 0.5139 32 1 1.9923 2.1597 -0.0004 33 1 4.4891 1.3485 0.0003 34 1 5.6884 -0.8904 0.0900 35 1 4.8260 -2.0658 -0.9312 36 1 3.6449 -3.9738 0.0675 37 1 3.4639 -4.1007 1.8334 38 1 2.6007 -2.8260 0.9395 39 1 7.4949 -5.4787 1.2873 40 1 8.2196 -4.2451 2.3461 41 1 8.2598 -4.5344 4.7481 42 1 8.2494 -6.1156 6.6277 43 1 9.9679 -7.6377 8.1827 44 1 6.4970 -9.1014 4.0627 45 1 6.5112 -7.4900 2.2091 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000869987264.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:33:58 Heat of formation + Delta-G solvation = -0.179041 kcal Electronic energy + Delta-G solvation = -26224.324146 eV Core-core repulsion = 22401.056089 eV Total energy + Delta-G solvation = -3823.268057 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.48879 -40.32712 -37.78401 -36.43275 -35.41504 -33.90281 -32.77636 -30.83418 -30.09533 -29.40322 -29.14115 -27.28343 -25.95725 -24.43885 -23.21440 -21.33568 -21.11890 -20.38405 -20.08250 -19.82318 -17.90766 -17.42096 -16.79554 -16.38360 -16.15544 -15.40529 -15.31760 -14.77147 -14.39852 -14.27551 -13.92038 -13.69554 -13.65430 -13.45639 -13.13877 -12.91157 -12.65251 -12.54595 -12.34152 -12.32324 -12.09953 -12.05794 -11.62672 -11.51774 -11.40353 -11.27655 -11.13912 -10.70555 -10.66297 -10.57664 -10.21587 -10.17335 -9.72902 -9.50209 -9.41455 -9.23917 -8.78985 -7.59262 -7.48576 -6.89797 -4.48905 1.64297 2.09659 2.29748 2.47306 2.56470 2.93414 2.98090 3.00986 3.06480 3.34312 3.83738 4.15955 4.36912 4.47843 4.55261 4.62487 4.86352 4.95566 5.08741 5.18983 5.31520 5.35793 5.41226 5.57273 5.59657 5.61057 5.62121 5.65640 5.78703 5.84885 5.87869 6.03057 6.20227 6.22066 6.28089 6.55662 6.73167 6.79135 6.84736 6.94946 7.15110 7.23392 7.48798 7.52226 7.70470 7.92541 7.93195 7.97704 8.16444 8.51055 8.75895 8.83906 10.04314 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.021428 B = 0.001976 C = 0.001907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1306.369321 B =14168.207133 C =14682.420182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C 0.067 3.933 3 C -0.274 4.274 4 C 0.058 3.942 5 N -0.369 5.369 6 C 0.150 3.850 7 C -0.096 4.096 8 H 0.111 0.889 9 C -0.153 4.153 10 C 0.466 3.534 11 O -0.523 6.523 12 O -0.344 6.344 13 C 0.136 3.864 14 C -0.237 4.237 15 C -0.075 4.075 16 C -0.171 4.171 17 C 0.119 3.881 18 C -0.455 4.455 19 H 0.081 0.919 20 C 0.075 3.925 21 N -0.786 5.786 22 Si 0.910 3.090 23 H -0.269 1.269 24 H -0.274 1.274 25 H -0.259 1.259 26 C -0.230 4.230 27 C -0.063 4.063 28 N -0.289 5.289 29 H 0.075 0.925 30 H 0.072 0.928 31 H 0.076 0.924 32 H 0.146 0.854 33 H 0.173 0.827 34 H 0.107 0.893 35 H 0.095 0.905 36 H 0.057 0.943 37 H 0.071 0.929 38 H 0.099 0.901 39 H 0.062 0.938 40 H 0.062 0.938 41 H 0.088 0.912 42 H 0.120 0.880 43 H 0.283 0.717 44 H 0.095 0.905 45 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.722 15.063 -10.805 21.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.099 4.099 3 C -0.303 4.303 4 C -0.088 4.088 5 N -0.151 5.151 6 C 0.029 3.971 7 C -0.116 4.116 8 H 0.128 0.872 9 C -0.211 4.211 10 C 0.309 3.691 11 O -0.414 6.414 12 O -0.260 6.260 13 C 0.064 3.936 14 C -0.238 4.238 15 C -0.094 4.094 16 C -0.190 4.190 17 C 0.116 3.884 18 C -0.484 4.484 19 H 0.099 0.901 20 C -0.144 4.144 21 N -0.410 5.410 22 Si 0.734 3.266 23 H -0.194 1.194 24 H -0.199 1.199 25 H -0.183 1.183 26 C -0.250 4.250 27 C -0.081 4.081 28 N -0.112 5.112 29 H 0.093 0.907 30 H 0.091 0.909 31 H 0.095 0.905 32 H 0.164 0.836 33 H 0.191 0.809 34 H 0.125 0.875 35 H 0.113 0.887 36 H 0.076 0.924 37 H 0.090 0.910 38 H 0.117 0.883 39 H 0.080 0.920 40 H 0.081 0.919 41 H 0.106 0.894 42 H 0.137 0.863 43 H 0.094 0.906 44 H 0.113 0.887 45 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -10.022 13.787 -10.903 20.234 hybrid contribution 0.423 0.550 0.708 0.991 sum -9.598 14.337 -10.195 20.041 Atomic orbital electron populations 1.20168 0.86759 1.03307 1.02851 1.22435 0.97010 0.90925 0.99549 1.21374 0.91613 0.99774 1.17561 1.22594 0.99827 0.84834 1.01510 1.48569 1.05252 1.04594 1.56683 1.21569 0.83719 0.92507 0.99321 1.21201 0.93068 0.96718 1.00629 0.87150 1.22019 0.97246 0.99114 1.02680 1.23265 0.87945 0.78967 0.78901 1.90636 1.43533 1.66706 1.40482 1.86713 1.43034 1.47048 1.49169 1.21762 0.81830 0.91854 0.98162 1.18644 1.15958 0.94379 0.94857 1.20531 0.98533 0.97544 0.92765 1.21294 1.06086 0.93351 0.98252 1.17692 0.87686 0.91808 0.91195 1.19676 1.15408 1.10596 1.02733 0.90132 1.25983 0.93575 0.94445 1.00391 1.69821 1.07391 1.30889 1.32919 0.86272 0.80191 0.79639 0.80538 1.19440 1.19906 1.18275 1.20955 1.12102 0.98462 0.93453 1.20387 0.97410 0.93199 0.97134 1.77207 0.86451 1.22469 1.25118 0.90655 0.90876 0.90540 0.83642 0.80941 0.87519 0.88700 0.92393 0.91024 0.88290 0.91995 0.91939 0.89356 0.86267 0.90621 0.88673 0.89293 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.49 10.45 36.00 0.38 -0.11 16 2 C 0.07 0.67 7.22 -82.41 -0.59 0.07 16 3 C -0.27 -2.41 10.74 -40.01 -0.43 -2.84 16 4 C 0.06 0.51 11.45 -17.22 -0.20 0.31 16 5 N -0.37 -3.91 3.68 -61.36 -0.23 -4.14 16 6 C 0.15 1.54 5.31 -4.04 -0.02 1.52 16 7 C -0.10 -1.15 3.03 -91.77 -0.28 -1.43 16 8 H 0.11 1.26 8.14 -51.92 -0.42 0.84 16 9 C -0.15 -1.85 8.85 37.16 0.33 -1.52 16 10 C 0.47 7.11 7.25 36.00 0.26 7.37 16 11 O -0.52 -8.76 15.67 -18.75 -0.29 -9.05 16 12 O -0.34 -6.14 10.11 -39.27 -0.40 -6.54 16 13 C 0.14 2.55 5.58 36.01 0.20 2.76 16 14 C -0.24 -5.21 5.54 -104.33 -0.58 -5.79 16 15 C -0.08 -1.74 9.67 -39.66 -0.38 -2.13 16 16 C -0.17 -4.36 8.70 -38.87 -0.34 -4.70 16 17 C 0.12 3.11 5.57 -106.83 -0.60 2.52 16 18 C -0.46 -11.77 9.05 -37.74 -0.34 -12.11 16 19 H 0.08 1.99 7.91 -52.49 -0.41 1.58 16 20 C 0.08 1.83 5.14 -17.34 -0.09 1.74 16 21 N -0.79 -19.73 10.97 55.55 0.61 -19.12 16 22 Si 0.91 18.06 29.60 -169.99 -5.03 13.03 16 23 H -0.27 -5.27 7.11 56.52 0.40 -4.87 16 24 H -0.27 -5.32 7.11 56.52 0.40 -4.92 16 25 H -0.26 -5.12 7.11 56.52 0.40 -4.71 16 26 C -0.23 -5.57 9.80 -38.87 -0.38 -5.95 16 27 C -0.06 -1.40 9.67 -39.66 -0.38 -1.79 16 28 N -0.29 -3.41 9.64 33.67 0.32 -3.09 16 29 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 30 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.08 0.39 8.14 -51.92 -0.42 -0.04 16 32 H 0.15 0.95 8.06 -52.49 -0.42 0.52 16 33 H 0.17 0.93 8.06 -52.49 -0.42 0.50 16 34 H 0.11 0.94 7.88 -51.93 -0.41 0.53 16 35 H 0.09 1.00 8.14 -51.93 -0.42 0.57 16 36 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.07 0.92 8.11 -51.93 -0.42 0.50 16 38 H 0.10 1.20 5.37 -51.93 -0.28 0.92 16 39 H 0.06 1.11 8.07 -51.93 -0.42 0.69 16 40 H 0.06 1.13 8.07 -51.93 -0.42 0.71 16 41 H 0.09 1.86 8.06 -52.49 -0.42 1.43 16 42 H 0.12 3.12 6.18 -52.49 -0.32 2.80 16 43 H 0.28 6.42 8.30 -40.82 -0.34 6.08 16 44 H 0.10 2.15 8.06 -52.49 -0.42 1.73 16 45 H 0.09 1.76 8.06 -52.49 -0.42 1.33 16 LS Contribution 383.00 15.07 5.77 5.77 Total: -1.00 -29.48 383.00 -9.16 -38.64 By element: Atomic # 1 Polarization: 13.04 SS G_CDS: -6.47 Total: 6.57 kcal Atomic # 6 Polarization: -18.63 SS G_CDS: -3.44 Total: -22.07 kcal Atomic # 7 Polarization: -27.06 SS G_CDS: 0.71 Total: -26.35 kcal Atomic # 8 Polarization: -14.90 SS G_CDS: -0.69 Total: -15.59 kcal Atomic # 14 Polarization: 18.06 SS G_CDS: -5.03 Total: 13.03 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -29.48 -9.16 -38.64 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000869987264.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.460 kcal (2) G-P(sol) polarization free energy of solvation -29.481 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.979 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.639 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.179 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds