Wall clock time and date at job start Tue Mar 31 2020 15:33:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 C 1.39867 * 125.90304 * 2 1 4 4 C 1.35314 * 107.92715 * 179.97438 * 3 2 1 5 5 N 1.34947 * 107.74188 * 0.02562 * 4 3 2 6 6 C 1.46507 * 126.03617 * 179.97438 * 5 4 3 7 7 C 1.53004 * 109.46871 * 125.00347 * 6 5 4 8 8 H 1.09007 * 109.46989 * 304.99946 * 7 6 5 9 9 C 1.52999 * 109.47262 * 65.00000 * 7 6 5 10 10 C 1.50695 * 109.46845 * 185.00161 * 7 6 5 11 11 O 1.20826 * 120.00326 * 359.97438 * 10 7 6 12 12 O 1.34234 * 119.99745 * 179.97438 * 10 7 6 13 13 C 1.45199 * 116.99872 * 179.97438 * 12 10 7 14 14 C 1.50699 * 109.47288 * 180.02562 * 13 12 10 15 15 C 1.38638 * 119.74919 * 269.73020 * 14 13 12 16 16 C 1.37621 * 120.24786 * 179.71976 * 15 14 13 17 17 C 1.40722 * 119.74226 * 0.56799 * 16 15 14 18 18 C 1.41390 * 120.24285 * 179.68440 * 17 16 15 19 19 H 1.07993 * 120.00484 * 155.31499 * 18 17 16 20 20 C 1.39952 * 119.99755 * 335.31028 * 18 17 16 21 21 N 1.30819 * 120.00285 * 342.23502 * 20 18 17 22 22 Si 1.86805 * 119.99730 * 162.23268 * 20 18 17 23 23 H 1.48503 * 109.46835 * 94.66540 * 22 20 18 24 24 H 1.48499 * 109.47053 * 214.66277 * 22 20 18 25 25 H 1.48494 * 109.47066 * 334.66691 * 22 20 18 26 26 C 1.40711 * 119.51066 * 359.70644 * 17 16 15 27 27 C 1.37619 * 119.75023 * 359.97438 * 26 17 16 28 28 N 1.30843 * 125.89989 * 180.30890 * 2 1 3 29 29 H 1.08996 * 109.47302 * 89.99784 * 1 2 3 30 30 H 1.09001 * 109.47505 * 209.99900 * 1 2 3 31 31 H 1.09007 * 109.47316 * 329.99732 * 1 2 3 32 32 H 1.07999 * 126.03712 * 359.97438 * 3 2 1 33 33 H 1.07996 * 126.13287 * 179.97438 * 4 3 2 34 34 H 1.09000 * 109.46971 * 5.00125 * 6 5 4 35 35 H 1.09000 * 109.47264 * 245.00119 * 6 5 4 36 36 H 1.08997 * 109.47194 * 60.00184 * 9 7 6 37 37 H 1.09000 * 109.46878 * 179.97438 * 9 7 6 38 38 H 1.08997 * 109.46867 * 299.99949 * 9 7 6 39 39 H 1.09001 * 109.47314 * 299.99961 * 13 12 10 40 40 H 1.08996 * 109.47249 * 60.00028 * 13 12 10 41 41 H 1.07995 * 119.87404 * 359.97438 * 15 14 13 42 42 H 1.07990 * 120.12656 * 180.27896 * 16 15 14 43 43 H 0.97005 * 120.00352 * 180.02562 * 21 20 18 44 44 H 1.07998 * 120.12535 * 179.97438 * 26 17 16 45 45 H 1.07997 * 119.87537 * 180.02562 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3271 1.1329 0.0000 4 6 3.6142 0.7153 0.0006 5 7 3.6087 -0.6341 0.0004 6 6 4.7899 -1.5008 0.0003 7 6 4.7114 -2.4699 1.1817 8 1 4.5860 -1.9062 2.1063 9 6 3.5194 -3.4101 0.9919 10 6 5.9817 -3.2774 1.2542 11 8 6.8595 -3.0968 0.4438 12 8 6.1380 -4.1974 2.2191 13 6 7.3867 -4.9382 2.2276 14 6 7.3816 -5.9184 3.3721 15 6 7.8743 -5.5337 4.6096 16 6 7.8693 -6.4187 5.6635 17 6 7.3725 -7.7222 5.4781 18 6 7.3685 -8.6422 6.5517 19 1 6.6643 -9.4610 6.5587 20 6 8.2771 -8.4918 7.6055 21 7 9.3379 -7.7416 7.4525 22 14 7.9752 -9.3622 9.2305 23 1 8.7071 -10.6543 9.2434 24 1 8.4574 -8.5090 10.3461 25 1 6.5211 -9.6155 9.3937 26 6 6.8802 -8.1034 4.2162 27 6 6.8889 -7.1997 3.1783 28 7 2.2741 -1.0599 -0.0057 29 1 -0.3634 0.0000 -1.0276 30 1 -0.3634 -0.8900 0.5138 31 1 -0.3634 0.8900 0.5139 32 1 1.9923 2.1597 -0.0004 33 1 4.4891 1.3485 0.0003 34 1 5.6884 -0.8904 0.0900 35 1 4.8260 -2.0658 -0.9312 36 1 3.6449 -3.9738 0.0675 37 1 3.4639 -4.1007 1.8334 38 1 2.6007 -2.8260 0.9395 39 1 7.4949 -5.4787 1.2873 40 1 8.2196 -4.2451 2.3461 41 1 8.2598 -4.5344 4.7481 42 1 8.2494 -6.1156 6.6277 43 1 9.9679 -7.6377 8.1827 44 1 6.4970 -9.1014 4.0627 45 1 6.5112 -7.4900 2.2091 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000869987264.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:33:57 Heat of formation + Delta-G solvation = -12.945271 kcal Electronic energy + Delta-G solvation = -26224.877731 eV Core-core repulsion = 22401.056089 eV Total energy + Delta-G solvation = -3823.821642 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.23340 -41.57468 -39.54774 -37.79141 -36.40605 -35.70837 -33.56717 -32.56493 -31.25860 -30.81141 -29.86881 -28.96615 -26.82482 -25.92426 -24.48654 -22.98046 -22.08723 -21.87287 -21.39376 -20.58750 -19.29341 -18.97224 -18.01410 -17.53027 -17.37130 -17.05985 -16.29027 -15.88673 -15.79311 -15.59616 -15.30924 -14.89838 -14.54954 -14.40800 -14.24701 -14.00063 -13.94590 -13.86636 -13.66706 -13.39320 -13.22733 -13.18234 -13.07388 -12.81270 -12.79467 -12.45575 -12.41791 -12.36911 -12.19149 -11.71614 -11.67497 -11.48813 -11.31871 -11.15932 -11.04601 -10.15217 -9.48546 -9.45652 -9.35886 -8.71344 -6.41677 0.67239 0.96035 1.06000 1.08697 1.32844 1.37982 1.48129 1.53556 1.90659 2.00632 2.18179 2.69384 3.31443 3.50504 3.61139 3.76114 3.94001 4.01686 4.03978 4.06812 4.08631 4.25359 4.43567 4.45111 4.49488 4.52846 4.53594 4.79561 4.82063 4.87653 4.89483 4.97365 4.98031 5.09858 5.10135 5.24380 5.27619 5.31088 5.36652 5.44142 5.62643 5.85428 5.87101 6.03329 6.11239 6.11438 6.29648 6.61771 6.63336 6.82211 6.86269 6.94614 8.25725 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.021428 B = 0.001976 C = 0.001907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1306.369321 B =14168.207133 C =14682.420182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C 0.055 3.945 3 C -0.283 4.283 4 C 0.057 3.943 5 N -0.381 5.381 6 C 0.156 3.844 7 C -0.086 4.086 8 H 0.118 0.882 9 C -0.147 4.147 10 C 0.470 3.530 11 O -0.535 6.535 12 O -0.356 6.356 13 C 0.141 3.859 14 C -0.231 4.231 15 C -0.080 4.080 16 C -0.194 4.194 17 C 0.087 3.913 18 C -0.493 4.493 19 H 0.079 0.921 20 C 0.035 3.965 21 N -0.818 5.818 22 Si 0.984 3.016 23 H -0.261 1.261 24 H -0.265 1.265 25 H -0.258 1.258 26 C -0.246 4.246 27 C -0.066 4.066 28 N -0.328 5.328 29 H 0.084 0.916 30 H 0.067 0.933 31 H 0.095 0.905 32 H 0.168 0.832 33 H 0.205 0.795 34 H 0.124 0.876 35 H 0.090 0.910 36 H 0.056 0.944 37 H 0.060 0.940 38 H 0.100 0.900 39 H 0.073 0.927 40 H 0.071 0.929 41 H 0.107 0.893 42 H 0.104 0.896 43 H 0.291 0.709 44 H 0.102 0.898 45 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.335 16.612 -11.429 23.132 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.110 4.110 3 C -0.312 4.312 4 C -0.088 4.088 5 N -0.163 5.163 6 C 0.034 3.966 7 C -0.106 4.106 8 H 0.136 0.864 9 C -0.204 4.204 10 C 0.314 3.686 11 O -0.426 6.426 12 O -0.273 6.273 13 C 0.069 3.931 14 C -0.232 4.232 15 C -0.098 4.098 16 C -0.214 4.214 17 C 0.085 3.915 18 C -0.521 4.521 19 H 0.098 0.902 20 C -0.181 4.181 21 N -0.443 5.443 22 Si 0.804 3.196 23 H -0.186 1.186 24 H -0.189 1.189 25 H -0.182 1.182 26 C -0.265 4.265 27 C -0.084 4.084 28 N -0.151 5.151 29 H 0.103 0.897 30 H 0.086 0.914 31 H 0.113 0.887 32 H 0.185 0.815 33 H 0.222 0.778 34 H 0.142 0.858 35 H 0.108 0.892 36 H 0.075 0.925 37 H 0.079 0.921 38 H 0.119 0.881 39 H 0.091 0.909 40 H 0.089 0.911 41 H 0.125 0.875 42 H 0.122 0.878 43 H 0.102 0.898 44 H 0.121 0.879 45 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -10.644 15.354 -11.552 21.966 hybrid contribution 0.569 0.206 0.731 0.949 sum -10.076 15.560 -10.821 21.465 Atomic orbital electron populations 1.20272 0.85052 1.03997 1.03669 1.23018 0.98348 0.91087 0.98591 1.21738 0.91586 1.00546 1.17284 1.23201 1.01112 0.84319 1.00142 1.48593 1.04869 1.05297 1.57503 1.21509 0.84515 0.92501 0.98048 1.21206 0.90918 0.96483 1.01964 0.86408 1.21955 0.97455 0.98933 1.02100 1.23788 0.88714 0.78250 0.77842 1.90632 1.44273 1.66919 1.40729 1.86671 1.42294 1.47887 1.50426 1.21580 0.82645 0.91728 0.97158 1.18977 1.13967 0.95055 0.95236 1.20781 0.98220 0.98051 0.92788 1.21275 1.07624 0.93946 0.98515 1.18055 0.88744 0.92401 0.92319 1.19920 1.16615 1.11327 1.04260 0.90239 1.26835 0.92753 0.95057 1.03480 1.69864 1.08125 1.32052 1.34270 0.85162 0.79954 0.78620 0.75832 1.18583 1.18911 1.18189 1.21169 1.12476 0.99383 0.93503 1.20712 0.96760 0.93045 0.97852 1.77145 0.87266 1.23813 1.26907 0.89697 0.91353 0.88671 0.81493 0.77821 0.85795 0.89181 0.92492 0.92104 0.88133 0.90864 0.91108 0.87466 0.87778 0.89830 0.87943 0.86480 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.86 10.45 71.23 0.74 -0.12 16 2 C 0.06 1.03 7.22 43.10 0.31 1.34 16 3 C -0.28 -4.32 10.74 21.99 0.24 -4.08 16 4 C 0.06 0.85 11.45 83.54 0.96 1.81 16 5 N -0.38 -7.40 3.68 -348.04 -1.28 -8.68 16 6 C 0.16 2.91 5.31 86.38 0.46 3.37 16 7 C -0.09 -1.92 3.03 -11.54 -0.03 -1.96 16 8 H 0.12 2.50 8.14 -2.38 -0.02 2.48 16 9 C -0.15 -3.44 8.85 71.98 0.64 -2.81 16 10 C 0.47 13.54 7.25 71.23 0.52 14.06 16 11 O -0.53 -16.86 15.67 21.96 0.34 -16.51 16 12 O -0.36 -12.19 10.11 -51.46 -0.52 -12.71 16 13 C 0.14 5.06 5.58 71.24 0.40 5.46 16 14 C -0.23 -9.96 5.54 -19.67 -0.11 -10.07 16 15 C -0.08 -3.72 9.67 22.22 0.21 -3.51 16 16 C -0.19 -10.22 8.70 22.73 0.20 -10.02 16 17 C 0.09 4.72 5.57 -21.29 -0.12 4.60 16 18 C -0.49 -26.29 9.05 23.46 0.21 -26.08 16 19 H 0.08 4.07 7.91 -2.91 -0.02 4.05 16 20 C 0.03 1.73 5.14 85.26 0.44 2.16 16 21 N -0.82 -42.09 10.97 21.83 0.24 -41.85 16 22 Si 0.98 37.35 29.60 68.60 2.03 39.39 16 23 H -0.26 -9.51 7.11 99.48 0.71 -8.80 16 24 H -0.26 -9.55 7.11 99.48 0.71 -8.84 16 25 H -0.26 -9.66 7.11 99.48 0.71 -8.95 16 26 C -0.25 -12.08 9.80 22.73 0.22 -11.85 16 27 C -0.07 -2.88 9.67 22.22 0.21 -2.67 16 28 N -0.33 -7.39 9.64 -47.39 -0.46 -7.85 16 29 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 30 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 31 H 0.09 0.76 8.14 -2.38 -0.02 0.74 16 32 H 0.17 1.68 8.06 -2.91 -0.02 1.66 16 33 H 0.21 1.49 8.06 -2.91 -0.02 1.46 16 34 H 0.12 1.86 7.88 -2.39 -0.02 1.84 16 35 H 0.09 1.76 8.14 -2.39 -0.02 1.75 16 36 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 37 H 0.06 1.53 8.11 -2.39 -0.02 1.51 16 38 H 0.10 2.39 5.37 -2.39 -0.01 2.38 16 39 H 0.07 2.47 8.07 -2.39 -0.02 2.45 16 40 H 0.07 2.42 8.07 -2.39 -0.02 2.41 16 41 H 0.11 4.46 8.06 -2.91 -0.02 4.43 16 42 H 0.10 5.69 6.18 -2.92 -0.02 5.67 16 43 H 0.29 13.43 8.30 -92.70 -0.77 12.66 16 44 H 0.10 4.72 8.06 -2.91 -0.02 4.70 16 45 H 0.12 4.41 8.06 -2.91 -0.02 4.39 16 Total: -1.00 -64.44 383.00 6.84 -57.60 By element: Atomic # 1 Polarization: 29.99 SS G_CDS: 0.99 Total: 30.98 kcal Atomic # 6 Polarization: -45.86 SS G_CDS: 5.50 Total: -40.37 kcal Atomic # 7 Polarization: -56.88 SS G_CDS: -1.50 Total: -58.38 kcal Atomic # 8 Polarization: -29.05 SS G_CDS: -0.18 Total: -29.22 kcal Atomic # 14 Polarization: 37.35 SS G_CDS: 2.03 Total: 39.39 kcal Total: -64.44 6.84 -57.60 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000869987264.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.657 kcal (2) G-P(sol) polarization free energy of solvation -64.443 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.785 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.603 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.945 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds