Wall clock time and date at job start Tue Mar 31 2020 16:04:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17397 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 N 1.46504 * 110.01618 * 37.11727 * 3 2 1 5 5 C 1.34781 * 120.00051 * 58.60404 * 4 3 2 6 6 O 1.21582 * 119.99669 * 0.02562 * 5 4 3 7 7 N 1.34771 * 119.99611 * 179.97438 * 5 4 3 8 8 C 1.46505 * 119.99776 * 179.72335 * 7 5 4 9 9 C 1.50701 * 109.47121 * 180.27695 * 8 7 5 10 10 C 1.38298 * 119.92990 * 269.72896 * 9 8 7 11 11 C 1.38111 * 120.06447 * 179.72591 * 10 9 8 12 12 C 1.38881 * 119.92709 * 0.57231 * 11 10 9 13 13 O 1.35753 * 120.06444 * 179.68139 * 12 11 10 14 14 C 1.34828 * 116.99980 * 174.48247 * 13 12 11 15 15 H 1.08007 * 119.99669 * 5.05772 * 14 13 12 16 16 C 1.38650 * 120.00455 * 185.06005 * 14 13 12 17 17 N 1.31553 * 120.00243 * 180.02562 * 16 14 13 18 18 Si 1.86800 * 119.99649 * 359.97438 * 16 14 13 19 19 H 1.48499 * 109.47145 * 90.00390 * 18 16 14 20 20 H 1.48507 * 109.47211 * 210.00378 * 18 16 14 21 21 H 1.48505 * 109.46969 * 330.00051 * 18 16 14 22 22 C 1.38877 * 119.86357 * 359.70135 * 12 11 10 23 23 C 1.38096 * 119.93329 * 0.02562 * 22 12 11 24 24 C 1.54268 * 110.06760 * 158.53022 * 3 2 1 25 25 C 1.54896 * 104.19574 * 95.70199 * 24 3 2 26 26 C 1.54887 * 102.74660 * 37.93892 * 25 24 3 27 27 C 1.53870 * 110.03553 * 275.72353 * 3 2 1 28 28 H 4.41738 * 5.46541 * 179.97438 * 4 1 2 29 29 H 0.96997 * 120.00036 * 238.60166 * 4 3 2 30 30 H 0.96998 * 120.00475 * 0.02562 * 7 5 4 31 31 H 1.09000 * 109.47232 * 300.28185 * 8 7 5 32 32 H 1.09001 * 109.46894 * 60.27844 * 8 7 5 33 33 H 1.07994 * 119.96878 * 359.97438 * 10 9 8 34 34 H 1.07993 * 120.03462 * 180.27464 * 11 10 9 35 35 H 0.97000 * 119.99823 * 179.97438 * 17 16 14 36 36 H 1.08004 * 120.03543 * 179.97438 * 22 12 11 37 37 H 1.08004 * 119.96668 * 180.02562 * 23 22 12 38 38 H 1.09007 * 110.48634 * 214.37204 * 24 3 2 39 39 H 1.08996 * 110.49151 * 337.02172 * 24 3 2 40 40 H 1.09005 * 110.74779 * 279.62722 * 25 24 3 41 41 H 1.08991 * 110.91634 * 156.33018 * 25 24 3 42 42 H 1.09003 * 110.48784 * 203.38518 * 26 25 24 43 43 H 1.09001 * 110.48880 * 80.74046 * 26 25 24 44 44 H 1.09000 * 110.03235 * 359.95352 * 27 3 2 45 45 H 1.08996 * 110.03035 * 121.38545 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1479 -1.0968 -0.8307 5 6 2.8073 -1.1666 -2.1329 6 8 2.0838 -0.3185 -2.6182 7 7 3.2695 -2.1759 -2.8971 8 6 2.8944 -2.2552 -4.3110 9 6 3.5329 -3.4703 -4.9328 10 6 4.7839 -3.3713 -5.5141 11 6 5.3741 -4.4844 -6.0797 12 6 4.7050 -5.7014 -6.0748 13 8 5.2798 -6.7959 -6.6357 14 6 4.6289 -7.9684 -6.4964 15 1 3.6552 -7.9933 -6.0296 16 6 5.2093 -9.1421 -6.9523 17 7 4.5740 -10.2860 -6.8168 18 14 6.8930 -9.0988 -7.7603 19 1 7.9434 -9.2738 -6.7253 20 1 6.9923 -10.1955 -8.7567 21 1 7.0818 -7.7927 -8.4414 22 6 3.4465 -5.7962 -5.4953 23 6 2.8640 -4.6808 -4.9263 24 6 3.1747 1.3494 -0.5304 25 6 3.4448 2.1808 0.7483 26 6 4.0040 1.1230 1.7319 27 6 3.1732 -0.1433 1.4384 28 1 -1.0498 -0.0004 0.0000 29 1 3.7254 -1.7731 -0.4435 30 1 3.8470 -2.8522 -2.5099 31 1 1.8103 -2.3309 -4.3957 32 1 3.2375 -1.3594 -4.8287 33 1 5.3014 -2.4235 -5.5222 34 1 6.3529 -4.4075 -6.5296 35 1 4.9800 -11.1070 -7.1361 36 1 2.9234 -6.7412 -5.4903 37 1 1.8855 -4.7541 -4.4751 38 1 4.0973 1.2031 -1.0922 39 1 2.4225 1.8368 -1.1505 40 1 2.5199 2.6129 1.1305 41 1 4.1833 2.9594 0.5575 42 1 3.8569 1.4452 2.7628 43 1 5.0605 0.9402 1.5355 44 1 2.3391 -0.2128 2.1366 45 1 3.8025 -1.0296 1.5184 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000883313114.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:04:13 Heat of formation + Delta-G solvation = 21.162667 kcal Electronic energy + Delta-G solvation = -26398.344705 eV Core-core repulsion = 22576.002094 eV Total energy + Delta-G solvation = -3822.342611 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.52950 -39.35313 -38.40027 -36.98508 -34.37377 -33.93071 -32.60121 -32.41811 -30.39797 -30.04343 -29.19358 -27.77828 -25.90843 -24.41938 -22.19093 -21.82755 -21.40433 -20.92831 -20.59354 -18.60340 -18.01457 -17.96549 -17.35883 -16.63929 -15.78025 -15.47814 -15.25496 -14.89182 -14.72562 -14.39890 -14.12179 -13.97882 -13.88842 -13.86565 -13.35903 -13.03900 -12.74425 -12.56191 -12.27663 -12.19530 -11.98878 -11.71963 -11.58097 -11.48196 -11.36826 -11.03887 -10.95171 -10.84707 -10.77533 -10.65508 -10.30611 -10.23177 -9.97111 -9.49091 -9.40670 -8.96083 -8.83356 -8.38172 -7.48873 -6.50659 -4.17650 1.89117 2.02394 2.40011 2.73893 3.13461 3.17319 3.20072 3.24781 3.34138 4.04881 4.15906 4.18848 4.23548 4.29476 4.49536 4.69379 4.74364 5.01247 5.05441 5.08200 5.14817 5.17541 5.28628 5.37603 5.38973 5.49785 5.55319 5.56718 5.69298 5.74704 5.86826 5.90004 5.98277 6.00884 6.02966 6.25124 6.38692 6.45315 6.57766 6.67586 6.82838 6.96621 7.12835 7.19078 7.49506 7.54545 7.70028 7.93557 8.02687 8.63594 8.83909 9.44643 10.56498 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.024450 B = 0.002006 C = 0.001988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1144.908216 B =13953.014957 C =14083.534010 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.177 4.177 3 C 0.304 3.696 4 N -0.741 5.741 5 C 0.701 3.299 6 O -0.584 6.584 7 N -0.738 5.738 8 C 0.197 3.803 9 C -0.205 4.205 10 C -0.055 4.055 11 C -0.196 4.196 12 C 0.166 3.834 13 O -0.213 6.213 14 C -0.391 4.391 15 H 0.108 0.892 16 C 0.064 3.936 17 N -0.875 5.875 18 Si 0.906 3.094 19 H -0.273 1.273 20 H -0.281 1.281 21 H -0.259 1.259 22 C -0.224 4.224 23 C -0.052 4.052 24 C -0.116 4.116 25 C -0.126 4.126 26 C -0.122 4.122 27 C -0.122 4.122 28 H 0.215 0.785 29 H 0.398 0.602 30 H 0.397 0.603 31 H 0.064 0.936 32 H 0.065 0.935 33 H 0.114 0.886 34 H 0.118 0.882 35 H 0.281 0.719 36 H 0.134 0.866 37 H 0.111 0.889 38 H 0.077 0.923 39 H 0.079 0.921 40 H 0.069 0.931 41 H 0.072 0.928 42 H 0.071 0.929 43 H 0.071 0.929 44 H 0.080 0.920 45 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.247 20.393 16.028 25.968 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.178 4.178 3 C 0.218 3.782 4 N -0.398 5.398 5 C 0.401 3.599 6 O -0.461 6.461 7 N -0.393 5.393 8 C 0.075 3.925 9 C -0.206 4.206 10 C -0.074 4.074 11 C -0.215 4.215 12 C 0.113 3.887 13 O -0.117 6.117 14 C -0.467 4.467 15 H 0.125 0.875 16 C -0.140 4.140 17 N -0.513 5.513 18 Si 0.731 3.269 19 H -0.198 1.198 20 H -0.207 1.207 21 H -0.183 1.183 22 C -0.243 4.243 23 C -0.071 4.071 24 C -0.155 4.155 25 C -0.164 4.164 26 C -0.160 4.160 27 C -0.160 4.160 28 H 0.232 0.768 29 H 0.233 0.767 30 H 0.230 0.770 31 H 0.083 0.917 32 H 0.083 0.917 33 H 0.132 0.868 34 H 0.136 0.864 35 H 0.091 0.909 36 H 0.152 0.848 37 H 0.129 0.871 38 H 0.096 0.904 39 H 0.098 0.902 40 H 0.088 0.912 41 H 0.090 0.910 42 H 0.089 0.911 43 H 0.090 0.910 44 H 0.098 0.902 45 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -1.694 20.870 15.355 25.965 hybrid contribution 0.785 -1.098 -0.049 1.351 sum -0.910 19.771 15.306 25.020 Atomic orbital electron populations 1.24827 0.95791 0.99449 1.00680 1.22864 0.93922 1.00967 1.00053 1.17473 0.83343 0.87295 0.90135 1.45467 1.55127 1.30398 1.08798 1.16024 0.80514 0.82453 0.80905 1.90918 1.41051 1.41394 1.72718 1.45481 1.54400 1.28264 1.11204 1.19829 0.98640 0.95668 0.78403 1.19301 0.97476 0.94728 1.09128 1.20541 0.93911 0.96966 0.95998 1.20216 1.01373 0.91202 1.08691 1.19185 0.91360 0.87581 0.90536 1.83575 1.47699 1.15019 1.65432 1.20785 1.03583 0.80954 1.41361 0.87508 1.24491 0.99495 0.93497 0.96501 1.69641 1.38711 0.98185 1.44713 0.86172 0.82499 0.78667 0.79519 1.19818 1.20685 1.18319 1.21280 0.97003 0.99971 1.06084 1.20710 0.98246 0.91687 0.96407 1.22718 1.01781 0.93409 0.97591 1.22535 1.01157 0.97601 0.95127 1.22358 0.99541 0.94395 0.99708 1.22449 1.00349 0.99502 0.93661 0.76799 0.76732 0.76955 0.91734 0.91663 0.86756 0.86380 0.90910 0.84814 0.87126 0.90449 0.90190 0.91245 0.90959 0.91053 0.91026 0.90155 0.90306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.12 19.25 29.55 0.57 -1.55 16 2 C -0.18 -2.11 10.26 -37.12 -0.38 -2.49 16 3 C 0.30 3.00 0.87 -133.49 -0.12 2.88 16 4 N -0.74 -7.52 5.07 -53.99 -0.27 -7.79 16 5 C 0.70 9.42 8.01 -86.92 -0.70 8.72 16 6 O -0.58 -9.95 14.57 5.29 0.08 -9.87 16 7 N -0.74 -9.12 5.55 -66.41 -0.37 -9.49 16 8 C 0.20 2.72 5.80 -5.19 -0.03 2.69 16 9 C -0.20 -3.14 5.25 -104.58 -0.55 -3.69 16 10 C -0.06 -0.87 9.69 -39.61 -0.38 -1.25 16 11 C -0.20 -3.62 9.99 -39.39 -0.39 -4.02 16 12 C 0.17 3.65 6.65 -39.11 -0.26 3.39 16 13 O -0.21 -5.41 8.59 0.04 0.00 -5.41 16 14 C -0.39 -10.68 9.95 30.88 0.31 -10.38 16 15 H 0.11 2.97 5.44 -52.48 -0.29 2.69 16 16 C 0.06 1.75 5.49 -17.52 -0.10 1.65 16 17 N -0.88 -24.67 13.96 55.48 0.77 -23.90 16 18 Si 0.91 21.07 28.62 -169.99 -4.86 16.20 16 19 H -0.27 -6.22 7.11 56.52 0.40 -5.81 16 20 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 21 H -0.26 -6.05 7.11 56.52 0.40 -5.65 16 22 C -0.22 -4.57 9.17 -39.40 -0.36 -4.93 16 23 C -0.05 -0.88 9.69 -39.61 -0.38 -1.26 16 24 C -0.12 -1.14 4.95 -25.07 -0.12 -1.26 16 25 C -0.13 -0.88 6.91 -24.74 -0.17 -1.05 16 26 C -0.12 -0.70 6.83 -25.07 -0.17 -0.87 16 27 C -0.12 -0.83 6.22 -25.61 -0.16 -0.98 16 28 H 0.22 1.68 7.80 -54.10 -0.42 1.26 16 29 H 0.40 2.92 8.08 -40.82 -0.33 2.59 16 30 H 0.40 4.25 8.48 -40.82 -0.35 3.90 16 31 H 0.06 0.94 8.08 -51.93 -0.42 0.52 16 32 H 0.07 0.91 8.08 -51.93 -0.42 0.49 16 33 H 0.11 1.50 8.06 -52.49 -0.42 1.08 16 34 H 0.12 2.05 8.06 -52.49 -0.42 1.62 16 35 H 0.28 7.30 8.31 -40.82 -0.34 6.96 16 36 H 0.13 2.90 5.64 -52.48 -0.30 2.60 16 37 H 0.11 1.67 8.06 -52.48 -0.42 1.25 16 38 H 0.08 0.78 8.05 -51.92 -0.42 0.36 16 39 H 0.08 0.96 7.68 -51.93 -0.40 0.56 16 40 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 41 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 42 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 43 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 44 H 0.08 0.55 7.66 -51.93 -0.40 0.15 16 45 H 0.08 0.42 7.44 -51.93 -0.39 0.04 16 LS Contribution 380.15 15.07 5.73 5.73 Total: -1.00 -31.79 380.15 -8.54 -40.33 By element: Atomic # 1 Polarization: 14.82 SS G_CDS: -6.21 Total: 8.60 kcal Atomic # 6 Polarization: -10.99 SS G_CDS: -3.40 Total: -14.40 kcal Atomic # 7 Polarization: -41.32 SS G_CDS: 0.13 Total: -41.18 kcal Atomic # 8 Polarization: -15.36 SS G_CDS: 0.08 Total: -15.28 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -4.86 Total: 16.20 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -31.79 -8.54 -40.33 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000883313114.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.492 kcal (2) G-P(sol) polarization free energy of solvation -31.787 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.704 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.329 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.163 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds