Wall clock time and date at job start Tue Mar 31 2020 16:04:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17397 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 N 1.46504 * 110.01618 * 37.11727 * 3 2 1 5 5 C 1.34781 * 120.00051 * 58.60404 * 4 3 2 6 6 O 1.21582 * 119.99669 * 0.02562 * 5 4 3 7 7 N 1.34771 * 119.99611 * 179.97438 * 5 4 3 8 8 C 1.46505 * 119.99776 * 179.72335 * 7 5 4 9 9 C 1.50701 * 109.47121 * 180.27695 * 8 7 5 10 10 C 1.38298 * 119.92990 * 269.72896 * 9 8 7 11 11 C 1.38111 * 120.06447 * 179.72591 * 10 9 8 12 12 C 1.38881 * 119.92709 * 0.57231 * 11 10 9 13 13 O 1.35753 * 120.06444 * 179.68139 * 12 11 10 14 14 C 1.34828 * 116.99980 * 174.48247 * 13 12 11 15 15 H 1.08007 * 119.99669 * 5.05772 * 14 13 12 16 16 C 1.38650 * 120.00455 * 185.06005 * 14 13 12 17 17 N 1.31553 * 120.00243 * 180.02562 * 16 14 13 18 18 Si 1.86800 * 119.99649 * 359.97438 * 16 14 13 19 19 H 1.48499 * 109.47145 * 90.00390 * 18 16 14 20 20 H 1.48507 * 109.47211 * 210.00378 * 18 16 14 21 21 H 1.48505 * 109.46969 * 330.00051 * 18 16 14 22 22 C 1.38877 * 119.86357 * 359.70135 * 12 11 10 23 23 C 1.38096 * 119.93329 * 0.02562 * 22 12 11 24 24 C 1.54268 * 110.06760 * 158.53022 * 3 2 1 25 25 C 1.54896 * 104.19574 * 95.70199 * 24 3 2 26 26 C 1.54887 * 102.74660 * 37.93892 * 25 24 3 27 27 C 1.53870 * 110.03553 * 275.72353 * 3 2 1 28 28 H 4.41738 * 5.46541 * 179.97438 * 4 1 2 29 29 H 0.96997 * 120.00036 * 238.60166 * 4 3 2 30 30 H 0.96998 * 120.00475 * 0.02562 * 7 5 4 31 31 H 1.09000 * 109.47232 * 300.28185 * 8 7 5 32 32 H 1.09001 * 109.46894 * 60.27844 * 8 7 5 33 33 H 1.07994 * 119.96878 * 359.97438 * 10 9 8 34 34 H 1.07993 * 120.03462 * 180.27464 * 11 10 9 35 35 H 0.97000 * 119.99823 * 179.97438 * 17 16 14 36 36 H 1.08004 * 120.03543 * 179.97438 * 22 12 11 37 37 H 1.08004 * 119.96668 * 180.02562 * 23 22 12 38 38 H 1.09007 * 110.48634 * 214.37204 * 24 3 2 39 39 H 1.08996 * 110.49151 * 337.02172 * 24 3 2 40 40 H 1.09005 * 110.74779 * 279.62722 * 25 24 3 41 41 H 1.08991 * 110.91634 * 156.33018 * 25 24 3 42 42 H 1.09003 * 110.48784 * 203.38518 * 26 25 24 43 43 H 1.09001 * 110.48880 * 80.74046 * 26 25 24 44 44 H 1.09000 * 110.03235 * 359.95352 * 27 3 2 45 45 H 1.08996 * 110.03035 * 121.38545 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1479 -1.0968 -0.8307 5 6 2.8073 -1.1666 -2.1329 6 8 2.0838 -0.3185 -2.6182 7 7 3.2695 -2.1759 -2.8971 8 6 2.8944 -2.2552 -4.3110 9 6 3.5329 -3.4703 -4.9328 10 6 4.7839 -3.3713 -5.5141 11 6 5.3741 -4.4844 -6.0797 12 6 4.7050 -5.7014 -6.0748 13 8 5.2798 -6.7959 -6.6357 14 6 4.6289 -7.9684 -6.4964 15 1 3.6552 -7.9933 -6.0296 16 6 5.2093 -9.1421 -6.9523 17 7 4.5740 -10.2860 -6.8168 18 14 6.8930 -9.0988 -7.7603 19 1 7.9434 -9.2738 -6.7253 20 1 6.9923 -10.1955 -8.7567 21 1 7.0818 -7.7927 -8.4414 22 6 3.4465 -5.7962 -5.4953 23 6 2.8640 -4.6808 -4.9263 24 6 3.1747 1.3494 -0.5304 25 6 3.4448 2.1808 0.7483 26 6 4.0040 1.1230 1.7319 27 6 3.1732 -0.1433 1.4384 28 1 -1.0498 -0.0004 0.0000 29 1 3.7254 -1.7731 -0.4435 30 1 3.8470 -2.8522 -2.5099 31 1 1.8103 -2.3309 -4.3957 32 1 3.2375 -1.3594 -4.8287 33 1 5.3014 -2.4235 -5.5222 34 1 6.3529 -4.4075 -6.5296 35 1 4.9800 -11.1070 -7.1361 36 1 2.9234 -6.7412 -5.4903 37 1 1.8855 -4.7541 -4.4751 38 1 4.0973 1.2031 -1.0922 39 1 2.4225 1.8368 -1.1505 40 1 2.5199 2.6129 1.1305 41 1 4.1833 2.9594 0.5575 42 1 3.8569 1.4452 2.7628 43 1 5.0605 0.9402 1.5355 44 1 2.3391 -0.2128 2.1366 45 1 3.8025 -1.0296 1.5184 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000883313114.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:04:12 Heat of formation + Delta-G solvation = 1.135145 kcal Electronic energy + Delta-G solvation = -26399.213163 eV Core-core repulsion = 22576.002094 eV Total energy + Delta-G solvation = -3823.211069 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.48013 -40.91164 -39.34932 -38.48104 -35.59506 -34.77477 -34.43450 -33.40910 -31.88416 -31.40130 -29.79436 -28.64395 -27.56468 -25.88088 -23.72324 -22.60287 -22.30199 -22.03119 -21.59391 -19.88629 -19.53607 -19.07828 -18.87299 -17.46699 -16.80626 -16.61672 -16.29510 -16.20320 -16.00029 -15.74214 -15.61829 -15.34124 -15.15410 -14.72409 -14.48716 -14.43330 -14.29423 -14.06845 -13.56907 -13.19054 -13.10258 -12.88563 -12.57934 -12.47666 -12.37653 -12.32041 -12.08038 -12.03808 -11.94000 -11.65550 -11.43031 -11.31123 -11.19263 -10.98422 -10.89535 -10.39959 -9.87114 -9.80893 -9.11176 -8.51218 -6.24361 0.46118 0.53907 1.32397 1.35211 1.46664 1.52442 1.89483 2.15822 2.22958 2.27326 2.75519 3.02693 3.12160 3.32602 3.47514 3.59843 3.70691 3.84952 4.00767 4.13394 4.15380 4.43523 4.44363 4.48731 4.53622 4.55730 4.71687 4.73188 4.80887 4.85069 4.88344 4.94966 5.05653 5.18710 5.21400 5.22899 5.26605 5.33019 5.44189 5.48994 5.53477 5.60091 5.70488 5.78173 5.87539 6.01055 6.18638 6.70176 6.82822 7.10973 7.55580 7.62537 8.60009 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.024450 B = 0.002006 C = 0.001988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1144.908216 B =13953.014957 C =14083.534010 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.205 4.205 3 C 0.295 3.705 4 N -0.728 5.728 5 C 0.699 3.301 6 O -0.621 6.621 7 N -0.731 5.731 8 C 0.204 3.796 9 C -0.172 4.172 10 C -0.043 4.043 11 C -0.191 4.191 12 C 0.130 3.870 13 O -0.241 6.241 14 C -0.400 4.400 15 H 0.082 0.918 16 C 0.010 3.990 17 N -0.921 5.921 18 Si 0.971 3.029 19 H -0.264 1.264 20 H -0.269 1.269 21 H -0.262 1.262 22 C -0.238 4.238 23 C -0.050 4.050 24 C -0.115 4.115 25 C -0.122 4.122 26 C -0.116 4.116 27 C -0.117 4.117 28 H 0.238 0.762 29 H 0.413 0.587 30 H 0.407 0.593 31 H 0.060 0.940 32 H 0.074 0.926 33 H 0.154 0.846 34 H 0.132 0.868 35 H 0.285 0.715 36 H 0.109 0.891 37 H 0.131 0.869 38 H 0.073 0.927 39 H 0.049 0.951 40 H 0.066 0.934 41 H 0.083 0.917 42 H 0.086 0.914 43 H 0.082 0.918 44 H 0.080 0.920 45 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.209 23.014 17.583 28.963 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.206 4.206 3 C 0.208 3.792 4 N -0.385 5.385 5 C 0.399 3.601 6 O -0.501 6.501 7 N -0.387 5.387 8 C 0.080 3.920 9 C -0.173 4.173 10 C -0.061 4.061 11 C -0.210 4.210 12 C 0.080 3.920 13 O -0.148 6.148 14 C -0.476 4.476 15 H 0.100 0.900 16 C -0.189 4.189 17 N -0.562 5.562 18 Si 0.793 3.207 19 H -0.189 1.189 20 H -0.194 1.194 21 H -0.186 1.186 22 C -0.257 4.257 23 C -0.069 4.069 24 C -0.154 4.154 25 C -0.160 4.160 26 C -0.154 4.154 27 C -0.155 4.155 28 H 0.254 0.746 29 H 0.250 0.750 30 H 0.243 0.757 31 H 0.079 0.921 32 H 0.092 0.908 33 H 0.172 0.828 34 H 0.150 0.850 35 H 0.095 0.905 36 H 0.127 0.873 37 H 0.148 0.852 38 H 0.091 0.909 39 H 0.068 0.932 40 H 0.085 0.915 41 H 0.102 0.898 42 H 0.105 0.895 43 H 0.101 0.899 44 H 0.099 0.901 45 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -0.228 23.515 16.964 28.996 hybrid contribution 0.138 -1.551 -0.379 1.602 sum -0.091 21.965 16.585 27.523 Atomic orbital electron populations 1.25608 0.96878 0.98969 1.00397 1.23559 0.95112 1.01482 1.00448 1.17791 0.82610 0.87039 0.91743 1.45364 1.54629 1.30790 1.07698 1.16150 0.80158 0.82022 0.81756 1.90902 1.42759 1.42799 1.73688 1.45229 1.54470 1.28419 1.10571 1.19702 0.98289 0.94757 0.79210 1.19525 0.96807 0.94427 1.06578 1.20944 0.93679 0.97534 0.93964 1.20524 1.01891 0.90423 1.08150 1.19740 0.92400 0.87931 0.91946 1.83523 1.48249 1.15008 1.68059 1.20703 1.03064 0.82384 1.41437 0.90025 1.25301 1.03227 0.93056 0.97324 1.69728 1.40595 0.98875 1.46986 0.85209 0.78068 0.78585 0.78813 1.18927 1.19414 1.18607 1.21255 0.97001 1.00273 1.07206 1.20899 0.99091 0.91159 0.95718 1.22655 1.00458 0.93848 0.98443 1.22525 1.01526 0.97954 0.94014 1.22365 0.99792 0.93109 1.00088 1.22463 1.00745 1.00952 0.91307 0.74581 0.74960 0.75725 0.92136 0.90812 0.82805 0.84979 0.90542 0.87327 0.85150 0.90867 0.93248 0.91526 0.89825 0.89515 0.89913 0.90139 0.88480 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -4.32 19.25 74.32 1.43 -2.89 16 2 C -0.20 -4.71 10.26 31.13 0.32 -4.39 16 3 C 0.29 5.32 0.87 2.52 0.00 5.32 16 4 N -0.73 -13.13 5.07 -443.00 -2.24 -15.38 16 5 C 0.70 17.32 8.01 179.05 1.44 18.75 16 6 O -0.62 -20.44 14.57 -3.97 -0.06 -20.50 16 7 N -0.73 -15.85 5.55 -482.29 -2.68 -18.53 16 8 C 0.20 4.95 5.80 85.63 0.50 5.45 16 9 C -0.17 -4.74 5.25 -19.83 -0.10 -4.85 16 10 C -0.04 -1.18 9.69 22.25 0.22 -0.96 16 11 C -0.19 -6.68 9.99 22.39 0.22 -6.46 16 12 C 0.13 5.73 6.65 22.58 0.15 5.88 16 13 O -0.24 -12.63 8.59 -22.76 -0.20 -12.83 16 14 C -0.40 -22.94 9.95 67.92 0.68 -22.27 16 15 H 0.08 4.92 5.44 -2.91 -0.02 4.90 16 16 C 0.01 0.55 5.49 84.83 0.47 1.01 16 17 N -0.92 -54.16 13.96 21.61 0.30 -53.86 16 18 Si 0.97 44.32 28.62 68.60 1.96 46.29 16 19 H -0.26 -11.54 7.11 99.48 0.71 -10.84 16 20 H -0.27 -11.57 7.11 99.48 0.71 -10.87 16 21 H -0.26 -11.89 7.11 99.48 0.71 -11.19 16 22 C -0.24 -9.92 9.17 22.39 0.21 -9.71 16 23 C -0.05 -1.63 9.69 22.25 0.22 -1.41 16 24 C -0.12 -2.13 4.95 31.67 0.16 -1.97 16 25 C -0.12 -1.46 6.91 31.89 0.22 -1.24 16 26 C -0.12 -0.96 6.83 31.67 0.22 -0.75 16 27 C -0.12 -1.27 6.22 31.32 0.19 -1.07 16 28 H 0.24 3.44 7.80 -4.43 -0.03 3.41 16 29 H 0.41 4.82 8.08 -92.71 -0.75 4.07 16 30 H 0.41 7.29 8.48 -92.71 -0.79 6.50 16 31 H 0.06 1.59 8.08 -2.39 -0.02 1.57 16 32 H 0.07 1.76 8.08 -2.39 -0.02 1.74 16 33 H 0.15 3.16 8.06 -2.91 -0.02 3.14 16 34 H 0.13 4.25 8.06 -2.91 -0.02 4.22 16 35 H 0.28 15.36 8.31 -92.71 -0.77 14.59 16 36 H 0.11 5.05 5.64 -2.91 -0.02 5.04 16 37 H 0.13 3.71 8.06 -2.91 -0.02 3.69 16 38 H 0.07 1.37 8.05 -2.38 -0.02 1.36 16 39 H 0.05 1.20 7.68 -2.39 -0.02 1.18 16 40 H 0.07 0.83 8.14 -2.38 -0.02 0.81 16 41 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 42 H 0.09 0.50 8.14 -2.39 -0.02 0.48 16 43 H 0.08 0.54 8.14 -2.39 -0.02 0.52 16 44 H 0.08 0.90 7.66 -2.39 -0.02 0.88 16 45 H 0.10 0.70 7.44 -2.39 -0.02 0.68 16 Total: -1.00 -72.77 380.15 3.10 -69.67 By element: Atomic # 1 Polarization: 27.19 SS G_CDS: -0.51 Total: 26.68 kcal Atomic # 6 Polarization: -28.07 SS G_CDS: 6.52 Total: -21.55 kcal Atomic # 7 Polarization: -83.14 SS G_CDS: -4.62 Total: -87.76 kcal Atomic # 8 Polarization: -33.07 SS G_CDS: -0.25 Total: -33.32 kcal Atomic # 14 Polarization: 44.32 SS G_CDS: 1.96 Total: 46.29 kcal Total: -72.77 3.10 -69.67 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000883313114.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.807 kcal (2) G-P(sol) polarization free energy of solvation -72.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.962 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.097 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.671 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds