Wall clock time and date at job start Tue Mar 31 2020 15:10:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35995 * 116.99898 * 2 1 4 4 C 1.38565 * 120.07155 * 0.02562 * 3 2 1 5 5 C 1.38243 * 119.99788 * 180.02562 * 4 3 2 6 6 C 1.50709 * 119.92382 * 179.97438 * 5 4 3 7 7 C 1.38249 * 120.14768 * 0.02562 * 5 4 3 8 8 C 1.38236 * 120.14650 * 0.02562 * 7 5 4 9 9 C 1.50705 * 120.00186 * 180.02562 * 8 7 5 10 10 N 1.46496 * 109.46914 * 259.97854 * 9 8 7 11 11 C 1.38821 * 119.99854 * 180.02562 * 10 9 8 12 12 C 1.39799 * 119.58679 * 359.97438 * 11 10 9 13 13 C 1.38596 * 119.49219 * 179.97438 * 12 11 10 14 14 C 1.38387 * 118.68260 * 0.02562 * 13 12 11 15 15 C 1.40555 * 119.14660 * 359.97438 * 14 13 12 16 16 C 1.41311 * 119.78222 * 180.02562 * 15 14 13 17 17 H 1.08010 * 119.99800 * 359.97438 * 16 15 14 18 18 C 1.40030 * 120.00463 * 179.97438 * 16 15 14 19 19 N 1.30742 * 119.99616 * 0.02562 * 18 16 15 20 20 Si 1.86798 * 120.00416 * 179.97438 * 18 16 15 21 21 H 1.48504 * 109.46933 * 0.02562 * 20 18 16 22 22 H 1.48499 * 109.47158 * 120.00218 * 20 18 16 23 23 H 1.48503 * 109.46900 * 240.00519 * 20 18 16 24 24 N 1.31964 * 119.58477 * 179.72474 * 11 10 9 25 25 C 1.38566 * 120.00196 * 359.97438 * 8 7 5 26 26 O 1.35992 * 120.07720 * 180.02562 * 25 8 7 27 27 C 1.42903 * 116.99883 * 269.98063 * 26 25 8 28 28 H 1.09007 * 109.47188 * 299.99161 * 1 2 3 29 29 H 1.08994 * 109.47700 * 59.99882 * 1 2 3 30 30 H 1.09007 * 109.46974 * 179.97438 * 1 2 3 31 31 H 1.08000 * 120.00430 * 359.74911 * 4 3 2 32 32 H 1.09001 * 109.47036 * 90.00154 * 6 5 4 33 33 H 1.09004 * 109.46774 * 210.00151 * 6 5 4 34 34 H 1.08997 * 109.47133 * 329.99913 * 6 5 4 35 35 H 1.07996 * 119.92650 * 180.02562 * 7 5 4 36 36 H 1.09003 * 109.46878 * 19.97573 * 9 8 7 37 37 H 1.08990 * 109.47010 * 139.97698 * 9 8 7 38 38 H 0.97008 * 120.00387 * 359.97438 * 10 9 8 39 39 H 1.07999 * 120.25140 * 359.95806 * 12 11 10 40 40 H 1.08001 * 120.65727 * 180.02562 * 13 12 11 41 41 H 1.08000 * 120.42139 * 179.97438 * 14 13 12 42 42 H 0.96999 * 120.00144 * 179.97438 * 19 18 16 43 43 H 1.09006 * 109.46860 * 179.97438 * 27 26 25 44 44 H 1.08995 * 109.46986 * 299.99522 * 27 26 25 45 45 H 1.08998 * 109.47292 * 60.00131 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 1.2931 2.3748 0.0005 5 6 1.9223 3.6057 0.0000 6 6 1.1014 4.8696 0.0000 7 6 3.3028 3.6799 -0.0016 8 6 4.0602 2.5235 -0.0032 9 6 5.5648 2.6081 -0.0044 10 7 6.0647 2.3967 -1.3651 11 6 7.4297 2.4290 -1.6159 12 6 8.3195 2.6644 -0.5637 13 6 9.6819 2.6957 -0.8162 14 6 10.1220 2.4918 -2.1123 15 6 9.1779 2.2599 -3.1273 16 6 9.6125 2.0495 -4.4554 17 1 10.6671 2.0676 -4.6877 18 6 8.6759 1.8175 -5.4702 19 7 7.3993 1.7960 -5.1890 20 14 9.2504 1.5401 -7.2259 21 1 10.7326 1.6137 -7.2791 22 1 8.8049 0.2005 -7.6866 23 1 8.6703 2.5850 -8.1074 24 7 7.8714 2.2321 -2.8438 25 6 3.4359 1.2864 -0.0027 26 8 4.1795 0.1477 -0.0037 27 6 4.5324 -0.3955 -1.2775 28 1 -0.3634 0.5137 0.8901 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 0.2146 2.3197 -0.0031 32 1 0.9039 5.1746 1.0277 33 1 1.6497 5.6589 -0.5143 34 1 0.1570 4.6894 -0.5134 35 1 3.7906 4.6434 -0.0016 36 1 5.8736 3.5926 0.3473 37 1 5.9723 1.8423 0.6555 38 1 5.4420 2.2335 -2.0908 39 1 7.9480 2.8210 0.4383 40 1 10.3861 2.8756 -0.0173 41 1 11.1774 2.5107 -2.3407 42 1 6.7504 1.6357 -5.8920 43 1 5.1238 -1.3000 -1.1355 44 1 3.6263 -0.6369 -1.8331 45 1 5.1166 0.3363 -1.8354 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000886188604.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:10:06 Heat of formation + Delta-G solvation = -7.002543 kcal Electronic energy + Delta-G solvation = -27728.309433 eV Core-core repulsion = 23904.745487 eV Total energy + Delta-G solvation = -3823.563946 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.66790 -38.50709 -37.96601 -37.27579 -35.11017 -33.33689 -32.10237 -30.79946 -30.20950 -28.65519 -28.03282 -27.29030 -25.76852 -25.25717 -25.01734 -22.03491 -21.48572 -20.88623 -20.10031 -18.03140 -17.32892 -17.08909 -16.90843 -16.27161 -16.03422 -15.10128 -14.87241 -14.70474 -14.61577 -14.34849 -14.13836 -13.74532 -13.65082 -13.53745 -13.31271 -13.16226 -12.77187 -12.40300 -12.21752 -12.14842 -11.88223 -11.79712 -11.69479 -11.42328 -11.18467 -10.96640 -10.93808 -10.87961 -10.57760 -10.40906 -9.88403 -9.74339 -9.46307 -8.85123 -8.71199 -8.10244 -7.87276 -7.48094 -6.47822 -6.30338 -4.44153 1.05562 1.29743 2.88833 3.10193 3.12934 3.17362 3.27429 3.32455 3.35603 4.00338 4.03229 4.39950 4.58617 4.70586 4.85681 4.87519 4.93674 4.97763 5.20816 5.26162 5.30114 5.34852 5.42974 5.53415 5.62805 5.74200 5.79456 5.82827 6.03227 6.08009 6.11583 6.15923 6.20932 6.37157 6.53251 6.59792 6.62431 6.89125 6.93061 6.97356 7.10393 7.27539 7.62981 7.74503 7.84549 7.95591 8.19336 8.38741 8.69750 8.83294 9.15128 10.27170 10.43026 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.013366 B = 0.003272 C = 0.003054 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2094.422750 B = 8556.334983 C = 9166.374216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.306 6.306 3 C 0.108 3.892 4 C -0.197 4.197 5 C -0.058 4.058 6 C -0.113 4.113 7 C -0.124 4.124 8 C -0.074 4.074 9 C 0.185 3.815 10 N -0.732 5.732 11 C 0.413 3.587 12 C -0.364 4.364 13 C -0.032 4.032 14 C -0.317 4.317 15 C 0.293 3.707 16 C -0.435 4.435 17 H 0.083 0.917 18 C 0.072 3.928 19 N -0.717 5.717 20 Si 0.903 3.097 21 H -0.261 1.261 22 H -0.275 1.275 23 H -0.275 1.275 24 N -0.531 5.531 25 C 0.080 3.920 26 O -0.324 6.324 27 C 0.034 3.966 28 H 0.054 0.946 29 H 0.054 0.946 30 H 0.099 0.901 31 H 0.130 0.870 32 H 0.072 0.928 33 H 0.070 0.930 34 H 0.065 0.935 35 H 0.131 0.869 36 H 0.063 0.937 37 H 0.069 0.931 38 H 0.393 0.607 39 H 0.090 0.910 40 H 0.092 0.908 41 H 0.094 0.906 42 H 0.268 0.732 43 H 0.090 0.910 44 H 0.039 0.961 45 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.790 0.847 8.187 17.806 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.219 6.219 3 C 0.062 3.938 4 C -0.216 4.216 5 C -0.059 4.059 6 C -0.169 4.169 7 C -0.143 4.143 8 C -0.075 4.075 9 C 0.060 3.940 10 N -0.370 5.370 11 C 0.173 3.827 12 C -0.390 4.390 13 C -0.056 4.056 14 C -0.340 4.340 15 C 0.166 3.834 16 C -0.467 4.467 17 H 0.101 0.899 18 C -0.152 4.152 19 N -0.339 5.339 20 Si 0.728 3.272 21 H -0.185 1.185 22 H -0.200 1.200 23 H -0.200 1.200 24 N -0.253 5.253 25 C 0.035 3.965 26 O -0.240 6.240 27 C -0.061 4.061 28 H 0.072 0.928 29 H 0.072 0.928 30 H 0.117 0.883 31 H 0.148 0.852 32 H 0.090 0.910 33 H 0.089 0.911 34 H 0.084 0.916 35 H 0.149 0.851 36 H 0.081 0.919 37 H 0.087 0.913 38 H 0.229 0.771 39 H 0.108 0.892 40 H 0.110 0.890 41 H 0.112 0.888 42 H 0.079 0.921 43 H 0.108 0.892 44 H 0.058 0.942 45 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -16.388 0.395 7.766 18.139 hybrid contribution 0.196 0.113 -0.527 0.573 sum -16.192 0.508 7.239 17.744 Atomic orbital electron populations 1.23061 0.78844 1.03861 1.01150 1.86184 1.20877 1.26234 1.88617 1.19387 0.91549 0.84767 0.98075 1.20980 0.99723 0.91384 1.09519 1.19677 0.93797 0.94554 0.97832 1.20788 0.99200 0.94560 1.02391 1.20833 0.92698 0.97946 1.02827 1.20143 0.96504 0.91574 0.99239 1.19858 0.86848 1.01198 0.86118 1.44188 1.04136 1.81472 1.07236 1.18483 0.83623 0.89900 0.90690 1.20612 0.93664 1.27225 0.97527 1.20595 0.94239 0.95260 0.95517 1.21532 0.98702 1.19661 0.94064 1.18186 0.85879 0.86666 0.92657 1.19604 0.94288 1.41768 0.91035 0.89919 1.26032 0.94651 0.93778 1.00779 1.70162 1.01352 1.29303 1.33053 0.86349 0.80236 0.78481 0.82162 1.18459 1.19992 1.20000 1.68204 1.16286 1.25153 1.15627 1.17833 0.86207 0.86814 1.05688 1.86021 1.70143 1.38096 1.29770 1.23145 0.99378 0.99521 0.84020 0.92757 0.92779 0.88294 0.85243 0.90982 0.91090 0.91641 0.85136 0.91921 0.91284 0.77108 0.89150 0.88963 0.88767 0.92108 0.89180 0.94207 0.91568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 9.81 101.05 0.99 1.21 16 2 O -0.31 -4.08 10.28 -34.23 -0.35 -4.44 16 3 C 0.11 1.52 6.70 -39.12 -0.26 1.26 16 4 C -0.20 -2.29 8.69 -39.46 -0.34 -2.63 16 5 C -0.06 -0.67 5.88 -104.61 -0.62 -1.28 16 6 C -0.11 -0.93 10.01 36.01 0.36 -0.56 16 7 C -0.12 -1.62 9.31 -39.58 -0.37 -1.99 16 8 C -0.07 -1.12 5.26 -104.50 -0.55 -1.67 16 9 C 0.18 3.13 4.67 -5.19 -0.02 3.11 16 10 N -0.73 -14.95 4.55 -61.57 -0.28 -15.23 16 11 C 0.41 10.10 7.65 -155.32 -1.19 8.91 16 12 C -0.36 -8.50 9.34 -38.87 -0.36 -8.86 16 13 C -0.03 -0.74 10.15 -39.39 -0.40 -1.14 16 14 C -0.32 -8.09 9.83 -38.65 -0.38 -8.47 16 15 C 0.29 8.20 6.55 -85.00 -0.56 7.64 16 16 C -0.43 -11.83 9.14 -37.74 -0.34 -12.18 16 17 H 0.08 2.12 7.85 -52.48 -0.41 1.71 16 18 C 0.07 1.86 5.50 -17.34 -0.10 1.76 16 19 N -0.72 -19.04 11.46 55.55 0.64 -18.40 16 20 Si 0.90 18.82 29.56 -169.99 -5.02 13.80 16 21 H -0.26 -5.35 7.11 56.52 0.40 -4.95 16 22 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 23 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 24 N -0.53 -14.66 7.89 -10.33 -0.08 -14.74 16 25 C 0.08 1.27 5.71 -39.12 -0.22 1.05 16 26 O -0.32 -5.61 9.43 -34.22 -0.32 -5.93 16 27 C 0.03 0.55 11.13 101.05 1.12 1.68 16 28 H 0.05 0.38 7.67 -51.92 -0.40 -0.02 16 29 H 0.05 0.39 7.66 -51.93 -0.40 -0.01 16 30 H 0.10 0.63 8.14 -51.93 -0.42 0.20 16 31 H 0.13 1.15 6.30 -52.49 -0.33 0.82 16 32 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 33 H 0.07 0.56 8.08 -51.93 -0.42 0.14 16 34 H 0.06 0.46 8.08 -51.93 -0.42 0.04 16 35 H 0.13 1.53 8.03 -52.49 -0.42 1.11 16 36 H 0.06 1.01 7.78 -51.93 -0.40 0.60 16 37 H 0.07 1.23 7.63 -51.93 -0.40 0.83 16 38 H 0.39 8.22 7.44 -40.82 -0.30 7.91 16 39 H 0.09 1.89 6.68 -52.49 -0.35 1.54 16 40 H 0.09 1.86 8.06 -52.49 -0.42 1.44 16 41 H 0.09 2.24 8.06 -52.49 -0.42 1.82 16 42 H 0.27 6.46 8.29 -40.82 -0.34 6.13 16 43 H 0.09 1.37 8.14 -51.93 -0.42 0.95 16 44 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 45 H 0.07 1.22 5.61 -51.93 -0.29 0.93 16 LS Contribution 375.61 15.07 5.66 5.66 Total: -1.00 -31.27 375.61 -9.22 -40.48 By element: Atomic # 1 Polarization: 17.19 SS G_CDS: -6.22 Total: 10.97 kcal Atomic # 6 Polarization: -8.93 SS G_CDS: -3.24 Total: -12.17 kcal Atomic # 7 Polarization: -48.65 SS G_CDS: 0.27 Total: -48.37 kcal Atomic # 8 Polarization: -9.70 SS G_CDS: -0.67 Total: -10.37 kcal Atomic # 14 Polarization: 18.82 SS G_CDS: -5.02 Total: 13.80 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -31.27 -9.22 -40.48 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000886188604.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.482 kcal (2) G-P(sol) polarization free energy of solvation -31.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.484 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.003 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds