Wall clock time and date at job start Tue Mar 31 2020 15:10:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35995 * 116.99898 * 2 1 4 4 C 1.38565 * 120.07155 * 0.02562 * 3 2 1 5 5 C 1.38243 * 119.99788 * 180.02562 * 4 3 2 6 6 C 1.50709 * 119.92382 * 179.97438 * 5 4 3 7 7 C 1.38249 * 120.14768 * 0.02562 * 5 4 3 8 8 C 1.38236 * 120.14650 * 0.02562 * 7 5 4 9 9 C 1.50705 * 120.00186 * 180.02562 * 8 7 5 10 10 N 1.46496 * 109.46914 * 259.97854 * 9 8 7 11 11 C 1.38821 * 119.99854 * 180.02562 * 10 9 8 12 12 C 1.39799 * 119.58679 * 359.97438 * 11 10 9 13 13 C 1.38596 * 119.49219 * 179.97438 * 12 11 10 14 14 C 1.38387 * 118.68260 * 0.02562 * 13 12 11 15 15 C 1.40555 * 119.14660 * 359.97438 * 14 13 12 16 16 C 1.41311 * 119.78222 * 180.02562 * 15 14 13 17 17 H 1.08010 * 119.99800 * 359.97438 * 16 15 14 18 18 C 1.40030 * 120.00463 * 179.97438 * 16 15 14 19 19 N 1.30742 * 119.99616 * 0.02562 * 18 16 15 20 20 Si 1.86798 * 120.00416 * 179.97438 * 18 16 15 21 21 H 1.48504 * 109.46933 * 0.02562 * 20 18 16 22 22 H 1.48499 * 109.47158 * 120.00218 * 20 18 16 23 23 H 1.48503 * 109.46900 * 240.00519 * 20 18 16 24 24 N 1.31964 * 119.58477 * 179.72474 * 11 10 9 25 25 C 1.38566 * 120.00196 * 359.97438 * 8 7 5 26 26 O 1.35992 * 120.07720 * 180.02562 * 25 8 7 27 27 C 1.42903 * 116.99883 * 269.98063 * 26 25 8 28 28 H 1.09007 * 109.47188 * 299.99161 * 1 2 3 29 29 H 1.08994 * 109.47700 * 59.99882 * 1 2 3 30 30 H 1.09007 * 109.46974 * 179.97438 * 1 2 3 31 31 H 1.08000 * 120.00430 * 359.74911 * 4 3 2 32 32 H 1.09001 * 109.47036 * 90.00154 * 6 5 4 33 33 H 1.09004 * 109.46774 * 210.00151 * 6 5 4 34 34 H 1.08997 * 109.47133 * 329.99913 * 6 5 4 35 35 H 1.07996 * 119.92650 * 180.02562 * 7 5 4 36 36 H 1.09003 * 109.46878 * 19.97573 * 9 8 7 37 37 H 1.08990 * 109.47010 * 139.97698 * 9 8 7 38 38 H 0.97008 * 120.00387 * 359.97438 * 10 9 8 39 39 H 1.07999 * 120.25140 * 359.95806 * 12 11 10 40 40 H 1.08001 * 120.65727 * 180.02562 * 13 12 11 41 41 H 1.08000 * 120.42139 * 179.97438 * 14 13 12 42 42 H 0.96999 * 120.00144 * 179.97438 * 19 18 16 43 43 H 1.09006 * 109.46860 * 179.97438 * 27 26 25 44 44 H 1.08995 * 109.46986 * 299.99522 * 27 26 25 45 45 H 1.08998 * 109.47292 * 60.00131 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 1.2931 2.3748 0.0005 5 6 1.9223 3.6057 0.0000 6 6 1.1014 4.8696 0.0000 7 6 3.3028 3.6799 -0.0016 8 6 4.0602 2.5235 -0.0032 9 6 5.5648 2.6081 -0.0044 10 7 6.0647 2.3967 -1.3651 11 6 7.4297 2.4290 -1.6159 12 6 8.3195 2.6644 -0.5637 13 6 9.6819 2.6957 -0.8162 14 6 10.1220 2.4918 -2.1123 15 6 9.1779 2.2599 -3.1273 16 6 9.6125 2.0495 -4.4554 17 1 10.6671 2.0676 -4.6877 18 6 8.6759 1.8175 -5.4702 19 7 7.3993 1.7960 -5.1890 20 14 9.2504 1.5401 -7.2259 21 1 10.7326 1.6137 -7.2791 22 1 8.8049 0.2005 -7.6866 23 1 8.6703 2.5850 -8.1074 24 7 7.8714 2.2321 -2.8438 25 6 3.4359 1.2864 -0.0027 26 8 4.1795 0.1477 -0.0037 27 6 4.5324 -0.3955 -1.2775 28 1 -0.3634 0.5137 0.8901 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 0.2146 2.3197 -0.0031 32 1 0.9039 5.1746 1.0277 33 1 1.6497 5.6589 -0.5143 34 1 0.1570 4.6894 -0.5134 35 1 3.7906 4.6434 -0.0016 36 1 5.8736 3.5926 0.3473 37 1 5.9723 1.8423 0.6555 38 1 5.4420 2.2335 -2.0908 39 1 7.9480 2.8210 0.4383 40 1 10.3861 2.8756 -0.0173 41 1 11.1774 2.5107 -2.3407 42 1 6.7504 1.6357 -5.8920 43 1 5.1238 -1.3000 -1.1355 44 1 3.6263 -0.6369 -1.8331 45 1 5.1166 0.3363 -1.8354 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000886188604.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:10:05 Heat of formation + Delta-G solvation = -24.198810 kcal Electronic energy + Delta-G solvation = -27729.055119 eV Core-core repulsion = 23904.745487 eV Total energy + Delta-G solvation = -3824.309632 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.71273 -40.12349 -39.27268 -38.36243 -36.70287 -35.16571 -33.30780 -32.28485 -31.77460 -30.33213 -28.85353 -28.30998 -27.34562 -26.87526 -26.16995 -23.44582 -22.91872 -22.45965 -21.52409 -19.29426 -19.10329 -18.16322 -17.98389 -17.88404 -17.05015 -16.64993 -16.45523 -16.14612 -15.92409 -15.65398 -15.30671 -15.09809 -14.98009 -14.87000 -14.56538 -14.41127 -14.22527 -13.67930 -13.62390 -13.16704 -13.10289 -12.94264 -12.82987 -12.72193 -12.67442 -12.58283 -12.38893 -12.24289 -11.96642 -11.81108 -11.67680 -11.31107 -10.98945 -10.64615 -9.82490 -9.74362 -9.43350 -9.11363 -8.29567 -8.21751 -6.46297 0.00265 0.27810 1.06758 1.35896 1.41887 1.56801 1.57722 2.23929 2.25629 2.28596 2.73304 2.93896 3.02330 3.57403 3.76683 4.00643 4.08003 4.19574 4.25644 4.30848 4.35050 4.36561 4.37601 4.40879 4.44809 4.59385 4.64091 4.69323 4.76323 4.79383 4.83192 4.86398 4.99854 5.02002 5.09330 5.11597 5.20017 5.34380 5.37434 5.52580 5.66220 5.72837 5.97822 6.07014 6.14110 6.23591 6.54005 6.60971 6.82821 6.91851 7.21546 8.34978 8.52293 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.013366 B = 0.003272 C = 0.003054 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2094.422750 B = 8556.334983 C = 9166.374216 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.331 6.331 3 C 0.102 3.898 4 C -0.190 4.190 5 C -0.051 4.051 6 C -0.111 4.111 7 C -0.132 4.132 8 C -0.086 4.086 9 C 0.190 3.810 10 N -0.723 5.723 11 C 0.399 3.601 12 C -0.366 4.366 13 C -0.029 4.029 14 C -0.343 4.343 15 C 0.260 3.740 16 C -0.470 4.470 17 H 0.085 0.915 18 C 0.028 3.972 19 N -0.751 5.751 20 Si 0.984 3.016 21 H -0.256 1.256 22 H -0.268 1.268 23 H -0.267 1.267 24 N -0.562 5.562 25 C 0.045 3.955 26 O -0.339 6.339 27 C 0.041 3.959 28 H 0.070 0.930 29 H 0.066 0.934 30 H 0.116 0.884 31 H 0.162 0.838 32 H 0.089 0.911 33 H 0.074 0.926 34 H 0.082 0.918 35 H 0.142 0.858 36 H 0.074 0.926 37 H 0.057 0.943 38 H 0.389 0.611 39 H 0.115 0.885 40 H 0.129 0.871 41 H 0.102 0.898 42 H 0.275 0.725 43 H 0.095 0.905 44 H 0.047 0.953 45 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.857 1.755 8.520 19.864 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.245 6.245 3 C 0.056 3.944 4 C -0.209 4.209 5 C -0.051 4.051 6 C -0.168 4.168 7 C -0.150 4.150 8 C -0.087 4.087 9 C 0.066 3.934 10 N -0.359 5.359 11 C 0.158 3.842 12 C -0.392 4.392 13 C -0.053 4.053 14 C -0.366 4.366 15 C 0.133 3.867 16 C -0.502 4.502 17 H 0.104 0.896 18 C -0.194 4.194 19 N -0.374 5.374 20 Si 0.805 3.195 21 H -0.179 1.179 22 H -0.192 1.192 23 H -0.192 1.192 24 N -0.285 5.285 25 C 0.000 4.000 26 O -0.256 6.256 27 C -0.054 4.054 28 H 0.089 0.911 29 H 0.085 0.915 30 H 0.134 0.866 31 H 0.180 0.820 32 H 0.108 0.892 33 H 0.093 0.907 34 H 0.101 0.899 35 H 0.160 0.840 36 H 0.092 0.908 37 H 0.075 0.925 38 H 0.223 0.777 39 H 0.133 0.867 40 H 0.146 0.854 41 H 0.120 0.880 42 H 0.085 0.915 43 H 0.113 0.887 44 H 0.066 0.934 45 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -18.487 1.312 8.146 20.245 hybrid contribution 0.668 -0.151 -0.481 0.837 sum -17.819 1.162 7.665 19.432 Atomic orbital electron populations 1.23400 0.76274 1.05617 1.02523 1.86150 1.23597 1.26214 1.88506 1.19488 0.91101 0.85962 0.97881 1.21349 1.01227 0.90445 1.07845 1.20094 0.93386 0.96035 0.95578 1.20877 0.99349 0.92750 1.03803 1.21039 0.93673 0.97555 1.02767 1.20007 0.95304 0.92396 1.00968 1.19897 0.88478 1.01156 0.83897 1.44299 1.02622 1.80422 1.08554 1.18883 0.85365 0.89500 0.90429 1.20937 0.93714 1.26192 0.98344 1.20993 0.95014 0.93655 0.95679 1.21693 0.98882 1.21224 0.94801 1.18661 0.86746 0.87433 0.93841 1.19943 0.94938 1.43450 0.91889 0.89645 1.26922 0.94478 0.92884 1.05093 1.70258 1.02563 1.29731 1.34799 0.85137 0.79804 0.78578 0.76004 1.17911 1.19246 1.19178 1.68181 1.16528 1.26506 1.17302 1.18122 0.87311 0.86439 1.08089 1.85994 1.70745 1.39027 1.29807 1.23031 0.99400 0.98891 0.84065 0.91100 0.91497 0.86586 0.82024 0.89245 0.90703 0.89877 0.84009 0.90790 0.92452 0.77658 0.86679 0.85365 0.87974 0.91479 0.88698 0.93391 0.94114 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.22 9.81 113.37 1.11 1.34 16 2 O -0.33 -8.48 10.28 -79.63 -0.82 -9.30 16 3 C 0.10 2.76 6.70 22.57 0.15 2.91 16 4 C -0.19 -3.91 8.69 22.35 0.19 -3.71 16 5 C -0.05 -1.03 5.88 -19.86 -0.12 -1.14 16 6 C -0.11 -1.40 10.01 71.24 0.71 -0.69 16 7 C -0.13 -3.26 9.31 22.27 0.21 -3.05 16 8 C -0.09 -2.61 5.26 -19.78 -0.10 -2.72 16 9 C 0.19 6.51 4.67 85.64 0.40 6.91 16 10 N -0.72 -30.45 4.55 -348.72 -1.59 -32.04 16 11 C 0.40 20.04 7.65 133.42 1.02 21.06 16 12 C -0.37 -17.07 9.34 22.73 0.21 -16.85 16 13 C -0.03 -1.36 10.15 22.39 0.23 -1.13 16 14 C -0.34 -17.92 9.83 22.87 0.22 -17.69 16 15 C 0.26 15.11 6.55 40.18 0.26 15.37 16 16 C -0.47 -26.48 9.14 23.46 0.21 -26.27 16 17 H 0.09 4.54 7.85 -2.91 -0.02 4.52 16 18 C 0.03 1.46 5.50 85.29 0.47 1.93 16 19 N -0.75 -41.14 11.46 21.84 0.25 -40.89 16 20 Si 0.98 39.18 29.56 68.60 2.03 41.21 16 21 H -0.26 -9.84 7.11 99.48 0.71 -9.13 16 22 H -0.27 -10.25 7.11 99.48 0.71 -9.55 16 23 H -0.27 -10.20 7.11 99.48 0.71 -9.50 16 24 N -0.56 -32.25 7.89 -186.59 -1.47 -33.72 16 25 C 0.05 1.45 5.71 22.57 0.13 1.58 16 26 O -0.34 -12.16 9.43 -79.60 -0.75 -12.91 16 27 C 0.04 1.39 11.13 113.37 1.26 2.66 16 28 H 0.07 0.76 7.67 -2.38 -0.02 0.74 16 29 H 0.07 0.77 7.66 -2.39 -0.02 0.75 16 30 H 0.12 1.20 8.14 -2.38 -0.02 1.18 16 31 H 0.16 2.19 6.30 -2.91 -0.02 2.18 16 32 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 33 H 0.07 0.93 8.08 -2.38 -0.02 0.91 16 34 H 0.08 0.80 8.08 -2.39 -0.02 0.78 16 35 H 0.14 3.10 8.03 -2.91 -0.02 3.08 16 36 H 0.07 2.35 7.78 -2.39 -0.02 2.33 16 37 H 0.06 2.09 7.63 -2.39 -0.02 2.07 16 38 H 0.39 17.02 7.44 -92.70 -0.69 16.33 16 39 H 0.12 4.70 6.68 -2.91 -0.02 4.68 16 40 H 0.13 4.93 8.06 -2.91 -0.02 4.90 16 41 H 0.10 4.98 8.06 -2.91 -0.02 4.96 16 42 H 0.27 13.59 8.29 -92.71 -0.77 12.82 16 43 H 0.09 3.05 8.14 -2.38 -0.02 3.03 16 44 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 45 H 0.04 1.59 5.61 -2.39 -0.01 1.58 16 Total: -1.00 -70.71 375.61 4.56 -66.15 By element: Atomic # 1 Polarization: 40.68 SS G_CDS: 0.33 Total: 41.00 kcal Atomic # 6 Polarization: -26.08 SS G_CDS: 6.58 Total: -19.50 kcal Atomic # 7 Polarization: -103.84 SS G_CDS: -2.81 Total: -106.65 kcal Atomic # 8 Polarization: -20.64 SS G_CDS: -1.57 Total: -22.21 kcal Atomic # 14 Polarization: 39.18 SS G_CDS: 2.03 Total: 41.21 kcal Total: -70.71 4.56 -66.15 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000886188604.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.951 kcal (2) G-P(sol) polarization free energy of solvation -70.706 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.755 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.556 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.149 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds