Wall clock time and date at job start Tue Mar 31 2020 15:34:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38129 * 126.29622 * 2 1 4 4 C 1.47288 * 126.42541 * 359.97438 * 3 2 1 5 5 O 1.21533 * 119.99823 * 0.02562 * 4 3 2 6 6 O 1.34770 * 119.99375 * 180.02562 * 4 3 2 7 7 C 1.35919 * 116.99650 * 185.15808 * 6 4 3 8 8 C 1.38761 * 120.05385 * 266.10241 * 7 6 4 9 9 C 1.38118 * 119.94400 * 179.97438 * 8 7 6 10 10 C 1.38291 * 120.05556 * 0.02562 * 9 8 7 11 11 C 1.38245 * 120.11320 * 359.97438 * 10 9 8 12 12 C 1.38164 * 120.05574 * 359.74659 * 11 10 9 13 13 C 1.50700 * 120.03032 * 180.27646 * 12 11 10 14 14 C 1.53002 * 109.46755 * 300.23127 * 13 12 11 15 15 C 1.52998 * 109.47332 * 60.23053 * 13 12 11 16 16 C 1.41343 * 107.14380 * 179.97438 * 3 2 1 17 17 N 1.30425 * 108.01540 * 359.75630 * 16 3 2 18 18 N 1.34225 * 126.29399 * 179.97438 * 2 1 3 19 19 C 1.46500 * 125.74578 * 359.97438 * 18 2 1 20 20 C 1.50694 * 109.47029 * 90.00935 * 19 18 2 21 21 H 1.08007 * 120.00202 * 359.97438 * 20 19 18 22 22 C 1.37877 * 120.00017 * 179.72648 * 20 19 18 23 23 N 1.31512 * 120.00327 * 0.27088 * 22 20 19 24 24 Si 1.86801 * 119.99950 * 180.27090 * 22 20 19 25 25 H 1.48502 * 109.47087 * 59.99908 * 24 22 20 26 26 H 1.48504 * 109.47026 * 180.02562 * 24 22 20 27 27 H 1.48503 * 109.47414 * 299.99820 * 24 22 20 28 28 H 1.08988 * 109.47336 * 270.02519 * 1 2 3 29 29 H 1.09007 * 109.46939 * 30.02939 * 1 2 3 30 30 H 1.09005 * 109.46966 * 150.02092 * 1 2 3 31 31 H 1.08001 * 120.02718 * 359.97438 * 8 7 6 32 32 H 1.08006 * 119.97567 * 179.97438 * 9 8 7 33 33 H 1.08005 * 119.94591 * 179.97438 * 10 9 8 34 34 H 1.08003 * 119.97019 * 180.02562 * 11 10 9 35 35 H 1.09000 * 109.47040 * 180.23855 * 13 12 11 36 36 H 1.09000 * 109.46793 * 179.97438 * 14 13 12 37 37 H 1.09003 * 109.47368 * 300.00178 * 14 13 12 38 38 H 1.09000 * 109.47493 * 60.00482 * 14 13 12 39 39 H 1.09006 * 109.46694 * 60.00087 * 15 13 12 40 40 H 1.08991 * 109.47290 * 180.02562 * 15 13 12 41 41 H 1.08998 * 109.46978 * 300.00452 * 15 13 12 42 42 H 1.07997 * 125.98776 * 179.97438 * 16 3 2 43 43 H 1.08996 * 109.47160 * 330.00529 * 19 18 2 44 44 H 1.09003 * 109.47033 * 210.00368 * 19 18 2 45 45 H 0.96992 * 120.00286 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3247 1.1133 0.0000 4 6 1.8873 2.5197 -0.0005 5 8 0.7018 2.7873 -0.0006 6 8 2.8017 3.5097 -0.0010 7 6 2.3343 4.7814 0.1074 8 6 2.0926 5.5326 -1.0339 9 6 1.6171 6.8244 -0.9212 10 6 1.3825 7.3695 0.3279 11 6 1.6225 6.6232 1.4666 12 6 2.0927 5.3285 1.3590 13 6 2.3482 4.5133 2.6005 14 6 3.3923 5.2191 3.4680 15 6 1.0460 4.3641 3.3897 16 6 3.6599 0.6496 0.0006 17 7 3.6341 -0.6544 0.0062 18 7 2.3016 -1.0818 0.0005 19 6 1.8498 -2.4754 0.0016 20 6 1.6947 -2.9543 -1.4187 21 1 1.9105 -2.2872 -2.2402 22 6 1.2820 -4.2458 -1.6696 23 7 1.0188 -5.0581 -0.6694 24 14 1.0970 -4.8417 -3.4303 25 1 2.4046 -4.7411 -4.1270 26 1 0.6436 -6.2559 -3.4292 27 1 0.0950 -4.0018 -4.1346 28 1 -0.3633 0.0005 1.0275 29 1 -0.3633 0.8898 -0.5143 30 1 -0.3633 -0.8902 -0.5135 31 1 2.2761 5.1075 -2.0097 32 1 1.4292 7.4097 -1.8092 33 1 1.0111 8.3801 0.4141 34 1 1.4380 7.0511 2.4410 35 1 2.7170 3.5272 2.3181 36 1 3.5768 4.6297 4.3662 37 1 4.3201 5.3254 2.9057 38 1 3.0236 6.2052 3.7504 39 1 0.3021 3.8613 2.7716 40 1 1.2309 3.7750 4.2878 41 1 0.6773 5.3502 3.6720 42 1 4.5461 1.2668 0.0004 43 1 0.8914 -2.5463 0.5158 44 1 2.5846 -3.0951 0.5157 45 1 0.7288 -5.9667 -0.8459 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000887659176.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:34:08 Heat of formation + Delta-G solvation = 2.251664 kcal Electronic energy + Delta-G solvation = -27692.421919 eV Core-core repulsion = 23869.259266 eV Total energy + Delta-G solvation = -3823.162654 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.32498 -40.59146 -38.72060 -36.37971 -35.52748 -33.97156 -32.20189 -31.37418 -30.46549 -29.76194 -27.66596 -27.24406 -26.80527 -24.16462 -23.72508 -23.14490 -21.84582 -20.47329 -20.10635 -19.01678 -17.90992 -17.09642 -16.82505 -16.66764 -16.02971 -15.26499 -14.87285 -14.65042 -14.53986 -14.31942 -13.99168 -13.92925 -13.75968 -13.50612 -13.26855 -12.75713 -12.58888 -12.52558 -12.31950 -12.17576 -12.16077 -11.92666 -11.84498 -11.59426 -11.40439 -11.25554 -11.18144 -10.91924 -10.79734 -10.53622 -10.45443 -10.36244 -10.01767 -9.91510 -8.97352 -8.75391 -8.72382 -8.69741 -8.14473 -6.38275 -4.46892 1.00398 1.19937 1.82425 2.65042 2.85476 3.17570 3.21841 3.24213 3.35373 3.57793 3.71800 4.20627 4.46169 4.60134 4.85708 4.92323 4.96550 4.99581 5.08333 5.09744 5.18861 5.27283 5.34076 5.36443 5.50071 5.56524 5.68753 5.71336 5.71900 5.85233 5.91841 5.95333 5.99778 6.03960 6.17285 6.21801 6.31471 6.34305 6.41770 6.42738 6.60129 6.70008 6.82865 6.92881 7.07706 7.48102 7.67154 7.71168 8.16915 8.30200 8.58319 9.20558 10.69887 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.020930 B = 0.002814 C = 0.002683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1337.463113 B = 9946.970436 C =10432.744542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C 0.176 3.824 3 C -0.318 4.318 4 C 0.548 3.452 5 O -0.510 6.510 6 O -0.295 6.295 7 C 0.097 3.903 8 C -0.117 4.117 9 C -0.113 4.113 10 C -0.119 4.119 11 C -0.106 4.106 12 C -0.075 4.075 13 C -0.062 4.062 14 C -0.139 4.139 15 C -0.143 4.143 16 C 0.081 3.919 17 N -0.295 5.295 18 N -0.309 5.309 19 C 0.251 3.749 20 C -0.544 4.544 21 H 0.066 0.934 22 C 0.069 3.931 23 N -0.889 5.889 24 Si 0.909 3.091 25 H -0.273 1.273 26 H -0.283 1.283 27 H -0.273 1.273 28 H 0.080 0.920 29 H 0.095 0.905 30 H 0.087 0.913 31 H 0.129 0.871 32 H 0.127 0.873 33 H 0.124 0.876 34 H 0.126 0.874 35 H 0.081 0.919 36 H 0.059 0.941 37 H 0.057 0.943 38 H 0.055 0.945 39 H 0.060 0.940 40 H 0.059 0.941 41 H 0.055 0.945 42 H 0.185 0.815 43 H 0.058 0.942 44 H 0.060 0.940 45 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.754 21.710 5.474 22.402 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.037 3.963 3 C -0.332 4.332 4 C 0.397 3.603 5 O -0.398 6.398 6 O -0.211 6.211 7 C 0.055 3.945 8 C -0.135 4.135 9 C -0.131 4.131 10 C -0.137 4.137 11 C -0.124 4.124 12 C -0.076 4.076 13 C -0.080 4.080 14 C -0.197 4.197 15 C -0.200 4.200 16 C -0.107 4.107 17 N -0.114 5.114 18 N -0.085 5.085 19 C 0.134 3.866 20 C -0.582 4.582 21 H 0.084 0.916 22 C -0.135 4.135 23 N -0.526 5.526 24 Si 0.735 3.265 25 H -0.198 1.198 26 H -0.208 1.208 27 H -0.198 1.198 28 H 0.099 0.901 29 H 0.113 0.887 30 H 0.106 0.894 31 H 0.147 0.853 32 H 0.145 0.855 33 H 0.142 0.858 34 H 0.144 0.856 35 H 0.100 0.900 36 H 0.078 0.922 37 H 0.076 0.924 38 H 0.074 0.926 39 H 0.080 0.920 40 H 0.078 0.922 41 H 0.074 0.926 42 H 0.202 0.798 43 H 0.076 0.924 44 H 0.078 0.922 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 1.019 20.307 5.527 21.071 hybrid contribution -0.499 0.346 -1.059 1.220 sum 0.520 20.654 4.468 21.138 Atomic orbital electron populations 1.20682 0.86546 1.05177 1.03588 1.21439 0.94973 0.86345 0.93497 1.18746 0.93920 0.88767 1.31733 1.20390 0.83403 0.84555 0.71983 1.90788 1.17518 1.83972 1.47536 1.84636 1.38889 1.13047 1.84491 1.18345 1.00038 0.83364 0.92741 1.21277 0.98987 0.95209 0.98039 1.20981 0.99514 0.94786 0.97857 1.21168 1.00127 0.99957 0.92442 1.20842 0.99486 0.93198 0.98848 1.20063 0.98289 0.95371 0.93851 1.20095 0.96715 0.98929 0.92290 1.21820 0.98398 1.00195 0.99255 1.21843 0.96621 1.01782 0.99791 1.23938 0.96586 0.92172 0.97999 1.77229 0.98247 1.12258 1.23636 1.49455 1.02599 1.08314 1.48138 1.19914 0.96552 0.70561 0.99598 1.21209 1.47973 0.98166 0.90900 0.91608 1.24919 0.94323 0.95927 0.98373 1.69895 1.44252 1.07201 1.31226 0.86369 0.78945 0.77787 0.83374 1.19831 1.20828 1.19805 0.90116 0.88668 0.89380 0.85303 0.85489 0.85755 0.85572 0.90046 0.92169 0.92395 0.92586 0.92045 0.92241 0.92611 0.79768 0.92419 0.92234 0.91965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.77 9.34 36.01 0.34 -1.43 16 2 C 0.18 3.50 7.01 -81.58 -0.57 2.93 16 3 C -0.32 -5.93 6.13 -105.08 -0.64 -6.57 16 4 C 0.55 9.58 7.20 34.41 0.25 9.83 16 5 O -0.51 -9.57 14.62 -19.29 -0.28 -9.85 16 6 O -0.29 -4.61 8.88 -24.93 -0.22 -4.84 16 7 C 0.10 1.37 4.91 -39.21 -0.19 1.18 16 8 C -0.12 -1.46 9.99 -39.43 -0.39 -1.86 16 9 C -0.11 -1.15 10.04 -39.61 -0.40 -1.55 16 10 C -0.12 -1.11 10.04 -39.56 -0.40 -1.51 16 11 C -0.11 -1.08 8.71 -39.61 -0.35 -1.43 16 12 C -0.08 -0.94 4.79 -104.47 -0.50 -1.44 16 13 C -0.06 -0.72 2.97 -91.77 -0.27 -0.99 16 14 C -0.14 -1.29 9.00 37.16 0.33 -0.95 16 15 C -0.14 -1.55 9.01 37.16 0.33 -1.22 16 16 C 0.08 1.46 11.87 -16.97 -0.20 1.26 16 17 N -0.29 -6.31 12.50 30.87 0.39 -5.93 16 18 N -0.31 -6.86 3.56 -57.76 -0.21 -7.06 16 19 C 0.25 6.09 5.78 -5.20 -0.03 6.06 16 20 C -0.54 -14.38 9.39 -34.44 -0.32 -14.70 16 21 H 0.07 1.79 7.81 -52.48 -0.41 1.37 16 22 C 0.07 1.81 5.46 -17.82 -0.10 1.72 16 23 N -0.89 -24.17 13.29 55.43 0.74 -23.43 16 24 Si 0.91 20.51 29.54 -169.99 -5.02 15.49 16 25 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 26 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 27 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 28 H 0.08 1.25 8.14 -51.94 -0.42 0.82 16 29 H 0.09 1.61 6.51 -51.93 -0.34 1.28 16 30 H 0.09 1.58 7.70 -51.93 -0.40 1.18 16 31 H 0.13 1.50 8.06 -52.49 -0.42 1.08 16 32 H 0.13 0.96 8.06 -52.48 -0.42 0.53 16 33 H 0.12 0.82 8.06 -52.48 -0.42 0.40 16 34 H 0.13 1.02 7.10 -52.48 -0.37 0.64 16 35 H 0.08 1.11 6.53 -51.93 -0.34 0.77 16 36 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 37 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.06 0.44 7.38 -51.93 -0.38 0.06 16 39 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 40 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 41 H 0.05 0.51 7.40 -51.93 -0.38 0.13 16 42 H 0.19 2.63 8.06 -52.49 -0.42 2.21 16 43 H 0.06 1.38 7.62 -51.93 -0.40 0.98 16 44 H 0.06 1.54 8.14 -51.93 -0.42 1.12 16 45 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 LS Contribution 382.79 15.07 5.77 5.77 Total: -1.00 -29.58 382.79 -8.34 -37.92 By element: Atomic # 1 Polarization: 9.00 SS G_CDS: -6.39 Total: 2.61 kcal Atomic # 6 Polarization: -7.56 SS G_CDS: -3.11 Total: -10.68 kcal Atomic # 7 Polarization: -37.33 SS G_CDS: 0.92 Total: -36.42 kcal Atomic # 8 Polarization: -14.19 SS G_CDS: -0.50 Total: -14.69 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -5.02 Total: 15.49 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -29.58 -8.34 -37.92 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000887659176.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.168 kcal (2) G-P(sol) polarization free energy of solvation -29.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.339 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.917 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds