Wall clock time and date at job start Tue Mar 31 2020 15:34:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38129 * 126.29622 * 2 1 4 4 C 1.47288 * 126.42541 * 359.97438 * 3 2 1 5 5 O 1.21533 * 119.99823 * 0.02562 * 4 3 2 6 6 O 1.34770 * 119.99375 * 180.02562 * 4 3 2 7 7 C 1.35919 * 116.99650 * 185.15808 * 6 4 3 8 8 C 1.38761 * 120.05385 * 266.10241 * 7 6 4 9 9 C 1.38118 * 119.94400 * 179.97438 * 8 7 6 10 10 C 1.38291 * 120.05556 * 0.02562 * 9 8 7 11 11 C 1.38245 * 120.11320 * 359.97438 * 10 9 8 12 12 C 1.38164 * 120.05574 * 359.74659 * 11 10 9 13 13 C 1.50700 * 120.03032 * 180.27646 * 12 11 10 14 14 C 1.53002 * 109.46755 * 300.23127 * 13 12 11 15 15 C 1.52998 * 109.47332 * 60.23053 * 13 12 11 16 16 C 1.41343 * 107.14380 * 179.97438 * 3 2 1 17 17 N 1.30425 * 108.01540 * 359.75630 * 16 3 2 18 18 N 1.34225 * 126.29399 * 179.97438 * 2 1 3 19 19 C 1.46500 * 125.74578 * 359.97438 * 18 2 1 20 20 C 1.50694 * 109.47029 * 90.00935 * 19 18 2 21 21 H 1.08007 * 120.00202 * 359.97438 * 20 19 18 22 22 C 1.37877 * 120.00017 * 179.72648 * 20 19 18 23 23 N 1.31512 * 120.00327 * 0.27088 * 22 20 19 24 24 Si 1.86801 * 119.99950 * 180.27090 * 22 20 19 25 25 H 1.48502 * 109.47087 * 59.99908 * 24 22 20 26 26 H 1.48504 * 109.47026 * 180.02562 * 24 22 20 27 27 H 1.48503 * 109.47414 * 299.99820 * 24 22 20 28 28 H 1.08988 * 109.47336 * 270.02519 * 1 2 3 29 29 H 1.09007 * 109.46939 * 30.02939 * 1 2 3 30 30 H 1.09005 * 109.46966 * 150.02092 * 1 2 3 31 31 H 1.08001 * 120.02718 * 359.97438 * 8 7 6 32 32 H 1.08006 * 119.97567 * 179.97438 * 9 8 7 33 33 H 1.08005 * 119.94591 * 179.97438 * 10 9 8 34 34 H 1.08003 * 119.97019 * 180.02562 * 11 10 9 35 35 H 1.09000 * 109.47040 * 180.23855 * 13 12 11 36 36 H 1.09000 * 109.46793 * 179.97438 * 14 13 12 37 37 H 1.09003 * 109.47368 * 300.00178 * 14 13 12 38 38 H 1.09000 * 109.47493 * 60.00482 * 14 13 12 39 39 H 1.09006 * 109.46694 * 60.00087 * 15 13 12 40 40 H 1.08991 * 109.47290 * 180.02562 * 15 13 12 41 41 H 1.08998 * 109.46978 * 300.00452 * 15 13 12 42 42 H 1.07997 * 125.98776 * 179.97438 * 16 3 2 43 43 H 1.08996 * 109.47160 * 330.00529 * 19 18 2 44 44 H 1.09003 * 109.47033 * 210.00368 * 19 18 2 45 45 H 0.96992 * 120.00286 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3247 1.1133 0.0000 4 6 1.8873 2.5197 -0.0005 5 8 0.7018 2.7873 -0.0006 6 8 2.8017 3.5097 -0.0010 7 6 2.3343 4.7814 0.1074 8 6 2.0926 5.5326 -1.0339 9 6 1.6171 6.8244 -0.9212 10 6 1.3825 7.3695 0.3279 11 6 1.6225 6.6232 1.4666 12 6 2.0927 5.3285 1.3590 13 6 2.3482 4.5133 2.6005 14 6 3.3923 5.2191 3.4680 15 6 1.0460 4.3641 3.3897 16 6 3.6599 0.6496 0.0006 17 7 3.6341 -0.6544 0.0062 18 7 2.3016 -1.0818 0.0005 19 6 1.8498 -2.4754 0.0016 20 6 1.6947 -2.9543 -1.4187 21 1 1.9105 -2.2872 -2.2402 22 6 1.2820 -4.2458 -1.6696 23 7 1.0188 -5.0581 -0.6694 24 14 1.0970 -4.8417 -3.4303 25 1 2.4046 -4.7411 -4.1270 26 1 0.6436 -6.2559 -3.4292 27 1 0.0950 -4.0018 -4.1346 28 1 -0.3633 0.0005 1.0275 29 1 -0.3633 0.8898 -0.5143 30 1 -0.3633 -0.8902 -0.5135 31 1 2.2761 5.1075 -2.0097 32 1 1.4292 7.4097 -1.8092 33 1 1.0111 8.3801 0.4141 34 1 1.4380 7.0511 2.4410 35 1 2.7170 3.5272 2.3181 36 1 3.5768 4.6297 4.3662 37 1 4.3201 5.3254 2.9057 38 1 3.0236 6.2052 3.7504 39 1 0.3021 3.8613 2.7716 40 1 1.2309 3.7750 4.2878 41 1 0.6773 5.3502 3.6720 42 1 4.5461 1.2668 0.0004 43 1 0.8914 -2.5463 0.5158 44 1 2.5846 -3.0951 0.5157 45 1 0.7288 -5.9667 -0.8459 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000887659176.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:34:07 Heat of formation + Delta-G solvation = -11.017427 kcal Electronic energy + Delta-G solvation = -27692.997310 eV Core-core repulsion = 23869.259266 eV Total energy + Delta-G solvation = -3823.738044 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.66211 -41.94159 -39.77018 -37.64751 -36.35576 -35.86524 -33.94972 -32.94579 -31.39151 -30.66501 -29.35469 -28.39513 -28.02714 -25.73597 -24.71812 -24.53547 -23.06565 -21.78456 -21.00416 -20.58992 -19.16938 -18.84796 -18.39538 -17.75076 -16.99969 -16.86960 -16.39930 -16.16888 -15.65448 -15.50856 -15.14618 -14.97077 -14.81814 -14.66296 -14.41029 -14.34688 -14.12674 -13.72239 -13.66440 -13.32485 -13.20724 -13.12821 -13.03380 -12.96534 -12.78595 -12.71959 -12.38142 -12.32998 -12.09763 -11.95339 -11.91070 -11.64250 -11.44014 -11.37387 -10.77514 -10.37403 -9.82455 -9.73770 -9.61266 -8.39952 -6.56497 0.07960 0.34273 0.36766 1.11604 1.37500 1.38734 1.43546 1.50904 1.96252 2.13826 2.31515 2.80472 2.92875 3.60492 3.61146 3.67408 3.78304 3.88483 4.08071 4.09628 4.23398 4.25106 4.33131 4.45235 4.47892 4.51475 4.58006 4.70827 4.76081 4.77204 4.86554 4.88488 4.94363 5.01288 5.05014 5.06228 5.14169 5.24139 5.35420 5.37012 5.45940 5.47637 5.51603 5.53843 5.56760 5.71339 5.91466 5.99785 6.51204 6.67567 6.91186 7.14873 8.67986 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.020930 B = 0.002814 C = 0.002683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1337.463113 B = 9946.970436 C =10432.744542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C 0.166 3.834 3 C -0.321 4.321 4 C 0.555 3.445 5 O -0.526 6.526 6 O -0.291 6.291 7 C 0.054 3.946 8 C -0.133 4.133 9 C -0.114 4.114 10 C -0.109 4.109 11 C -0.108 4.108 12 C -0.085 4.085 13 C -0.064 4.064 14 C -0.134 4.134 15 C -0.139 4.139 16 C 0.097 3.903 17 N -0.330 5.330 18 N -0.331 5.331 19 C 0.266 3.734 20 C -0.560 4.560 21 H 0.053 0.947 22 C 0.027 3.973 23 N -0.915 5.915 24 Si 0.970 3.030 25 H -0.274 1.274 26 H -0.273 1.273 27 H -0.266 1.266 28 H 0.099 0.901 29 H 0.099 0.901 30 H 0.078 0.922 31 H 0.127 0.873 32 H 0.155 0.845 33 H 0.161 0.839 34 H 0.153 0.847 35 H 0.052 0.948 36 H 0.066 0.934 37 H 0.052 0.948 38 H 0.075 0.925 39 H 0.034 0.966 40 H 0.066 0.934 41 H 0.076 0.924 42 H 0.222 0.778 43 H 0.056 0.944 44 H 0.035 0.965 45 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.354 24.604 5.440 25.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.029 3.971 3 C -0.334 4.334 4 C 0.403 3.597 5 O -0.415 6.415 6 O -0.207 6.207 7 C 0.013 3.987 8 C -0.152 4.152 9 C -0.132 4.132 10 C -0.127 4.127 11 C -0.126 4.126 12 C -0.086 4.086 13 C -0.083 4.083 14 C -0.191 4.191 15 C -0.196 4.196 16 C -0.090 4.090 17 N -0.149 5.149 18 N -0.107 5.107 19 C 0.148 3.852 20 C -0.598 4.598 21 H 0.071 0.929 22 C -0.175 4.175 23 N -0.552 5.552 24 Si 0.793 3.207 25 H -0.199 1.199 26 H -0.197 1.197 27 H -0.191 1.191 28 H 0.117 0.883 29 H 0.118 0.882 30 H 0.097 0.903 31 H 0.145 0.855 32 H 0.173 0.827 33 H 0.178 0.822 34 H 0.170 0.830 35 H 0.071 0.929 36 H 0.085 0.915 37 H 0.071 0.929 38 H 0.093 0.907 39 H 0.053 0.947 40 H 0.085 0.915 41 H 0.095 0.905 42 H 0.238 0.762 43 H 0.074 0.926 44 H 0.053 0.947 45 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 0.628 23.226 5.500 23.876 hybrid contribution -0.358 -0.344 -1.006 1.122 sum 0.270 22.882 4.494 23.320 Atomic orbital electron populations 1.20695 0.85109 1.04803 1.04675 1.21912 0.96054 0.86176 0.92966 1.18941 0.94024 0.89401 1.31052 1.20162 0.83389 0.84597 0.71528 1.90762 1.18212 1.84324 1.48218 1.84615 1.38253 1.13773 1.84026 1.18753 1.03057 0.82630 0.94282 1.21470 0.99673 0.96450 0.97570 1.21356 0.98357 0.93917 0.99569 1.21637 0.98148 1.01251 0.91624 1.21198 0.98556 0.92258 1.00589 1.20264 0.98492 0.96506 0.93318 1.20104 0.97621 0.97812 0.92743 1.21782 0.97402 1.01006 0.98872 1.21810 0.95576 1.02814 0.99391 1.24513 0.97669 0.91347 0.95514 1.77181 0.98215 1.13916 1.25624 1.49210 1.03307 1.07918 1.50256 1.19472 0.95622 0.71734 0.98347 1.21365 1.48419 0.98515 0.91497 0.92902 1.25697 0.93722 0.95870 1.02216 1.69975 1.44610 1.07591 1.33061 0.85423 0.78832 0.77730 0.78665 1.19924 1.19729 1.19071 0.88289 0.88227 0.90288 0.85487 0.82741 0.82170 0.82981 0.92901 0.91493 0.92884 0.90654 0.94698 0.91509 0.90472 0.76213 0.92598 0.94652 0.91559 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -3.35 9.34 71.24 0.67 -2.69 16 2 C 0.17 6.77 7.01 42.17 0.30 7.07 16 3 C -0.32 -12.12 6.13 -20.16 -0.12 -12.25 16 4 C 0.55 19.61 7.20 70.20 0.51 20.11 16 5 O -0.53 -19.94 14.62 19.73 0.29 -19.65 16 6 O -0.29 -9.20 8.88 -0.47 0.00 -9.20 16 7 C 0.05 1.50 4.91 22.51 0.11 1.61 16 8 C -0.13 -3.21 9.99 22.37 0.22 -2.99 16 9 C -0.11 -2.00 10.04 22.25 0.22 -1.78 16 10 C -0.11 -1.63 10.04 22.28 0.22 -1.41 16 11 C -0.11 -1.89 8.71 22.25 0.19 -1.69 16 12 C -0.09 -2.01 4.79 -19.77 -0.09 -2.11 16 13 C -0.06 -1.44 2.97 -11.54 -0.03 -1.47 16 14 C -0.13 -2.21 9.00 71.98 0.65 -1.56 16 15 C -0.14 -2.85 9.01 71.98 0.65 -2.20 16 16 C 0.10 3.52 11.87 85.67 1.02 4.54 16 17 N -0.33 -14.51 12.50 -56.25 -0.70 -15.22 16 18 N -0.33 -15.19 3.56 -336.66 -1.20 -16.39 16 19 C 0.27 13.50 5.78 85.63 0.50 13.99 16 20 C -0.56 -30.42 9.39 25.60 0.24 -30.17 16 21 H 0.05 2.95 7.81 -2.91 -0.02 2.93 16 22 C 0.03 1.43 5.46 84.66 0.46 1.89 16 23 N -0.91 -50.45 13.29 21.45 0.28 -50.16 16 24 Si 0.97 42.15 29.54 68.60 2.03 44.18 16 25 H -0.27 -11.88 7.11 99.48 0.71 -11.18 16 26 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 27 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 28 H 0.10 3.09 8.14 -2.39 -0.02 3.07 16 29 H 0.10 3.42 6.51 -2.38 -0.02 3.40 16 30 H 0.08 2.92 7.70 -2.38 -0.02 2.90 16 31 H 0.13 2.95 8.06 -2.91 -0.02 2.93 16 32 H 0.15 1.78 8.06 -2.91 -0.02 1.76 16 33 H 0.16 1.26 8.06 -2.91 -0.02 1.23 16 34 H 0.15 1.80 7.10 -2.91 -0.02 1.78 16 35 H 0.05 1.46 6.53 -2.39 -0.02 1.45 16 36 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 37 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 38 H 0.07 0.95 7.38 -2.39 -0.02 0.93 16 39 H 0.03 0.89 8.14 -2.38 -0.02 0.87 16 40 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 41 H 0.08 1.22 7.40 -2.39 -0.02 1.20 16 42 H 0.22 6.08 8.06 -2.91 -0.02 6.05 16 43 H 0.06 2.80 7.62 -2.39 -0.02 2.78 16 44 H 0.04 1.93 8.14 -2.39 -0.02 1.91 16 45 H 0.28 14.22 8.31 -92.71 -0.77 13.45 16 Total: -1.00 -65.47 382.79 7.39 -58.09 By element: Atomic # 1 Polarization: 18.47 SS G_CDS: 0.99 Total: 19.46 kcal Atomic # 6 Polarization: -16.81 SS G_CDS: 5.70 Total: -11.11 kcal Atomic # 7 Polarization: -80.15 SS G_CDS: -1.62 Total: -81.76 kcal Atomic # 8 Polarization: -29.14 SS G_CDS: 0.28 Total: -28.85 kcal Atomic # 14 Polarization: 42.15 SS G_CDS: 2.03 Total: 44.18 kcal Total: -65.47 7.39 -58.09 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000887659176.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.068 kcal (2) G-P(sol) polarization free energy of solvation -65.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.085 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds