Wall clock time and date at job start Tue Mar 31 2020 15:48:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.47201 * 109.51530 * 2 1 4 4 N 2.60803 * 109.51385 * 359.97438 * 2 1 3 5 5 C 1.53292 * 109.55510 * 120.12846 * 2 1 3 6 6 N 1.47145 * 108.38597 * 172.24774 * 5 2 1 7 7 C 1.34778 * 120.98395 * 129.48711 * 6 5 2 8 8 O 1.21287 * 119.99982 * 0.02562 * 7 6 5 9 9 C 1.50696 * 120.00217 * 180.02562 * 7 6 5 10 10 C 1.53002 * 109.47226 * 179.97438 * 9 7 6 11 11 H 1.08998 * 109.47114 * 305.36832 * 10 9 7 12 12 C 1.50700 * 109.47352 * 65.36790 * 10 9 7 13 13 H 1.08000 * 119.99623 * 34.61902 * 12 10 9 14 14 C 1.37877 * 120.00432 * 214.62452 * 12 10 9 15 15 N 1.31512 * 120.00111 * 186.44838 * 14 12 10 16 16 Si 1.86800 * 119.99651 * 6.43940 * 14 12 10 17 17 H 1.48503 * 109.46913 * 85.02604 * 16 14 12 18 18 H 1.48501 * 109.46973 * 205.02141 * 16 14 12 19 19 H 1.48496 * 109.47288 * 325.02576 * 16 14 12 20 20 C 1.50698 * 109.47312 * 185.36872 * 10 9 7 21 21 C 1.38239 * 119.99828 * 296.35959 * 20 10 9 22 22 C 1.38233 * 119.99523 * 179.74583 * 21 20 10 23 23 C 1.38237 * 120.00342 * 0.54573 * 22 21 20 24 24 C 1.38233 * 119.99740 * 359.70756 * 23 22 21 25 25 C 1.38233 * 120.00044 * 116.63159 * 20 10 9 26 26 C 1.47155 * 118.03896 * 309.46495 * 6 5 2 27 27 C 1.53294 * 108.38076 * 50.53168 * 26 6 5 28 28 O 1.42961 * 109.50816 * 239.89734 * 2 1 3 29 29 H 1.08994 * 109.47475 * 180.10441 * 1 2 3 30 30 H 1.09008 * 109.46937 * 300.10217 * 1 2 3 31 31 H 1.08995 * 109.47156 * 60.09482 * 1 2 3 32 32 H 1.09003 * 109.68185 * 291.97140 * 5 2 1 33 33 H 1.09004 * 109.68109 * 52.52261 * 5 2 1 34 34 H 1.08997 * 109.47202 * 299.99578 * 9 7 6 35 35 H 1.09000 * 109.47217 * 60.00323 * 9 7 6 36 36 H 0.97002 * 119.99987 * 180.02562 * 15 14 12 37 37 H 1.07995 * 120.00275 * 359.97438 * 21 20 10 38 38 H 1.08006 * 119.99825 * 180.27329 * 22 21 20 39 39 H 1.08007 * 119.99869 * 179.72515 * 23 22 21 40 40 H 1.08000 * 119.99740 * 179.97438 * 24 23 22 41 41 H 1.07998 * 120.00092 * 359.97438 * 25 20 10 42 42 H 1.08994 * 109.68327 * 170.26085 * 26 6 5 43 43 H 1.09003 * 109.68091 * 290.81534 * 26 6 5 44 44 H 1.08997 * 109.51005 * 187.77819 * 27 26 6 45 45 H 1.09004 * 109.51283 * 67.62763 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0218 1.3874 0.0000 4 7 2.4012 2.4582 -0.0011 5 6 2.0431 -0.7251 1.2494 6 7 3.5022 -0.8750 1.1325 7 6 4.3206 -0.5027 2.1366 8 8 3.8568 -0.0364 3.1557 9 6 5.8118 -0.6656 1.9931 10 6 6.5038 -0.1699 3.2645 11 1 6.1913 0.8534 3.4728 12 6 6.1233 -1.0568 4.4219 13 1 5.9649 -2.1133 4.2633 14 6 5.9773 -0.5195 5.6833 15 7 5.7706 -1.3091 6.7145 16 14 6.0732 1.3300 5.9275 17 1 4.7403 1.9328 5.6720 18 1 6.4903 1.6241 7.3220 19 1 7.0650 1.9033 4.9826 20 6 7.9978 -0.2094 3.0714 21 6 8.6368 -1.4184 2.8691 22 6 10.0066 -1.4540 2.6867 23 6 10.7388 -0.2819 2.7178 24 6 10.1004 0.9265 2.9252 25 6 8.7299 0.9628 3.1020 26 6 4.0416 -1.4441 -0.1127 27 6 3.4311 -0.6840 -1.2957 28 8 2.0074 -0.6759 -1.1658 29 1 -0.3634 -1.0276 0.0019 30 1 -0.3633 0.5155 0.8891 31 1 -0.3633 0.5123 -0.8908 32 1 1.8041 -0.1400 2.1375 33 1 1.5775 -1.7081 1.3205 34 1 6.0490 -1.7179 1.8367 35 1 6.1605 -0.0838 1.1398 36 1 5.6675 -0.9311 7.6018 37 1 8.0655 -2.3346 2.8500 38 1 10.5054 -2.3981 2.5243 39 1 11.8097 -0.3103 2.5797 40 1 10.6725 1.8422 2.9499 41 1 8.2311 1.9069 3.2640 42 1 5.1260 -1.3352 -0.1266 43 1 3.7773 -2.4995 -0.1788 44 1 3.7088 -1.1768 -2.2274 45 1 3.8022 0.3409 -1.3005 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000887684389.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:48:19 Heat of formation + Delta-G solvation = -14.840725 kcal Electronic energy + Delta-G solvation = -28462.567721 eV Core-core repulsion = 24638.663885 eV Total energy + Delta-G solvation = -3823.903835 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.65104 -38.93584 -38.18503 -36.29027 -34.72238 -34.20625 -33.40777 -31.69483 -30.23097 -29.27350 -28.96490 -27.12640 -25.37273 -23.88507 -23.14053 -22.47644 -21.85947 -19.99025 -18.73719 -18.18944 -17.09321 -16.98778 -16.44790 -15.99811 -15.62897 -15.45980 -14.93438 -14.60102 -14.25731 -14.22423 -13.86738 -13.78530 -13.52424 -13.26871 -12.81561 -12.76783 -12.71807 -12.58183 -12.51467 -12.39097 -12.19720 -11.96715 -11.94520 -11.79398 -11.70336 -11.10647 -11.03397 -10.79266 -10.56821 -10.52685 -10.37917 -9.91705 -9.63521 -9.25884 -9.04551 -8.49053 -8.40346 -8.22612 -7.84594 -6.01681 -3.98584 2.07810 2.12324 2.36852 2.57554 3.05310 3.24955 3.40583 3.41912 3.45908 3.52184 3.55172 4.30663 4.49910 4.55914 4.59651 4.72130 4.89922 4.98165 5.11993 5.25502 5.30915 5.35465 5.42355 5.49827 5.51070 5.53773 5.64831 5.66611 5.69200 5.78217 5.84187 5.92166 6.03650 6.21418 6.28947 6.45437 6.57615 6.61841 6.67427 6.80598 6.97030 7.12519 7.24086 7.32621 7.54192 7.63840 7.69900 7.79400 8.48967 8.76761 8.97163 9.63715 11.11002 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.012720 B = 0.004287 C = 0.003722 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2200.651540 B = 6529.183623 C = 7521.495731 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.204 3.796 3 C 0.184 3.816 4 N -0.405 5.405 5 C 0.096 3.904 6 N -0.636 5.636 7 C 0.521 3.479 8 O -0.491 6.491 9 C -0.115 4.115 10 C 0.056 3.944 11 H 0.048 0.952 12 C -0.489 4.489 13 H 0.072 0.928 14 C 0.087 3.913 15 N -0.897 5.897 16 Si 0.871 3.129 17 H -0.273 1.273 18 H -0.295 1.295 19 H -0.261 1.261 20 C -0.038 4.038 21 C -0.101 4.101 22 C -0.127 4.127 23 C -0.149 4.149 24 C -0.126 4.126 25 C -0.136 4.136 26 C 0.076 3.924 27 C 0.040 3.960 28 O -0.353 6.353 29 H 0.089 0.911 30 H 0.084 0.916 31 H 0.075 0.925 32 H 0.109 0.891 33 H 0.094 0.906 34 H 0.087 0.913 35 H 0.067 0.933 36 H 0.262 0.738 37 H 0.119 0.881 38 H 0.110 0.890 39 H 0.108 0.892 40 H 0.108 0.892 41 H 0.111 0.889 42 H 0.100 0.900 43 H 0.081 0.919 44 H 0.115 0.885 45 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.314 -1.704 -17.138 17.755 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.160 3.840 3 C -0.136 4.136 4 N -0.082 5.082 5 C -0.028 4.028 6 N -0.375 5.375 7 C 0.310 3.690 8 O -0.362 6.362 9 C -0.155 4.155 10 C 0.036 3.964 11 H 0.066 0.934 12 C -0.525 4.525 13 H 0.090 0.910 14 C -0.115 4.115 15 N -0.534 5.534 16 Si 0.699 3.301 17 H -0.199 1.199 18 H -0.222 1.222 19 H -0.186 1.186 20 C -0.039 4.039 21 C -0.119 4.119 22 C -0.145 4.145 23 C -0.167 4.167 24 C -0.144 4.144 25 C -0.154 4.154 26 C -0.048 4.048 27 C -0.038 4.038 28 O -0.270 6.270 29 H 0.108 0.892 30 H 0.103 0.897 31 H 0.094 0.906 32 H 0.127 0.873 33 H 0.112 0.888 34 H 0.106 0.894 35 H 0.086 0.914 36 H 0.072 0.928 37 H 0.137 0.863 38 H 0.128 0.872 39 H 0.126 0.874 40 H 0.126 0.874 41 H 0.129 0.871 42 H 0.118 0.882 43 H 0.099 0.901 44 H 0.133 0.867 45 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -4.127 0.062 -16.457 16.967 hybrid contribution 0.241 0.633 0.487 0.834 sum -3.885 0.695 -15.970 16.451 Atomic orbital electron populations 1.21782 0.88593 1.04935 1.04085 1.19475 0.96057 0.79923 0.88542 1.29795 0.94066 0.95567 0.94181 1.81170 1.07561 1.12746 1.06719 1.22148 0.82018 1.01738 0.96937 1.48358 1.05676 1.66185 1.17251 1.20941 0.89413 0.76781 0.81898 1.90751 1.76806 1.41666 1.26973 1.21711 0.90455 1.02793 1.00569 1.18134 0.86453 0.98741 0.93057 0.93381 1.20553 1.46312 0.95163 0.90519 0.91028 1.24865 0.93514 0.97369 0.95800 1.69889 1.49226 1.35039 0.99275 0.86967 0.79153 0.87262 0.76729 1.19868 1.22190 1.18621 1.20710 0.98460 0.92114 0.92632 1.20945 0.93684 0.98016 0.99302 1.21050 0.94550 0.97423 1.01503 1.20866 0.98808 0.93020 1.04015 1.20967 0.94700 0.97311 1.01421 1.21155 0.93951 0.98246 1.02068 1.22358 1.00443 0.98296 0.83661 1.23169 0.80501 1.00762 0.99350 1.88104 1.21884 1.74852 1.42126 0.89234 0.89689 0.90607 0.87318 0.88783 0.89430 0.91431 0.92801 0.86272 0.87159 0.87406 0.87385 0.87099 0.88166 0.90108 0.86716 0.92601 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.96 8.81 37.16 0.33 -0.63 16 2 C 0.20 2.14 1.05 -93.25 -0.10 2.04 16 3 C 0.18 2.52 12.35 -20.76 -0.26 2.27 16 4 N -0.40 -6.65 18.54 42.15 0.78 -5.87 16 5 C 0.10 1.17 5.29 -3.54 -0.02 1.16 16 6 N -0.64 -9.05 2.76 -172.28 -0.48 -9.53 16 7 C 0.52 9.94 7.46 -10.99 -0.08 9.86 16 8 O -0.49 -11.79 14.47 5.55 0.08 -11.71 16 9 C -0.12 -2.09 3.31 -27.88 -0.09 -2.19 16 10 C 0.06 1.26 1.28 -92.92 -0.12 1.14 16 11 H 0.05 1.18 4.79 -51.93 -0.25 0.94 16 12 C -0.49 -13.22 6.94 -34.44 -0.24 -13.46 16 13 H 0.07 2.08 8.06 -52.49 -0.42 1.66 16 14 C 0.09 2.55 5.47 -17.82 -0.10 2.45 16 15 N -0.90 -27.79 13.96 55.43 0.77 -27.01 16 16 Si 0.87 22.96 27.04 -169.99 -4.60 18.36 16 17 H -0.27 -7.42 7.11 56.52 0.40 -7.02 16 18 H -0.30 -7.78 7.11 56.52 0.40 -7.37 16 19 H -0.26 -6.44 5.14 56.52 0.29 -6.15 16 20 C -0.04 -0.80 4.77 -104.62 -0.50 -1.30 16 21 C -0.10 -1.94 8.87 -39.58 -0.35 -2.29 16 22 C -0.13 -2.13 10.05 -39.58 -0.40 -2.53 16 23 C -0.15 -2.41 10.05 -39.58 -0.40 -2.81 16 24 C -0.13 -2.17 10.05 -39.58 -0.40 -2.57 16 25 C -0.14 -2.70 9.13 -39.58 -0.36 -3.06 16 26 C 0.08 0.76 6.54 -3.53 -0.02 0.74 16 27 C 0.04 0.35 6.69 37.31 0.25 0.60 16 28 O -0.35 -3.49 10.21 -35.23 -0.36 -3.85 16 29 H 0.09 0.48 8.14 -51.93 -0.42 0.05 16 30 H 0.08 0.55 8.14 -51.92 -0.42 0.13 16 31 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.11 1.55 7.07 -51.93 -0.37 1.18 16 33 H 0.09 0.94 8.14 -51.93 -0.42 0.51 16 34 H 0.09 1.45 7.67 -51.93 -0.40 1.05 16 35 H 0.07 1.06 7.66 -51.93 -0.40 0.66 16 36 H 0.26 7.75 8.31 -40.82 -0.34 7.42 16 37 H 0.12 2.22 7.77 -52.49 -0.41 1.81 16 38 H 0.11 1.54 8.06 -52.48 -0.42 1.12 16 39 H 0.11 1.43 8.06 -52.48 -0.42 1.01 16 40 H 0.11 1.58 8.06 -52.49 -0.42 1.16 16 41 H 0.11 2.20 6.95 -52.49 -0.37 1.84 16 42 H 0.10 0.93 6.05 -51.93 -0.31 0.62 16 43 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 44 H 0.11 0.69 8.14 -51.93 -0.42 0.26 16 45 H 0.06 0.59 7.02 -51.93 -0.36 0.23 16 LS Contribution 368.81 15.07 5.56 5.56 Total: -1.00 -35.76 368.81 -7.43 -43.19 By element: Atomic # 1 Polarization: 7.78 SS G_CDS: -6.34 Total: 1.44 kcal Atomic # 6 Polarization: -7.73 SS G_CDS: -2.85 Total: -10.58 kcal Atomic # 7 Polarization: -43.49 SS G_CDS: 1.08 Total: -42.41 kcal Atomic # 8 Polarization: -15.28 SS G_CDS: -0.28 Total: -15.56 kcal Atomic # 14 Polarization: 22.96 SS G_CDS: -4.60 Total: 18.36 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -35.76 -7.43 -43.19 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000887684389.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.351 kcal (2) G-P(sol) polarization free energy of solvation -35.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.430 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.192 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds