Wall clock time and date at job start Tue Mar 31 2020 15:48:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.47200 * 109.51134 * 2 1 4 4 N 2.60802 * 109.50952 * 0.02562 * 2 1 3 5 5 C 1.52884 * 109.58040 * 239.98841 * 2 1 3 6 6 N 1.47148 * 108.60641 * 187.92102 * 5 2 1 7 7 C 1.34776 * 120.98467 * 230.50196 * 6 5 2 8 8 O 1.21277 * 119.99594 * 359.71306 * 7 6 5 9 9 C 1.50698 * 120.00178 * 179.72101 * 7 6 5 10 10 C 1.53006 * 109.47134 * 179.97438 * 9 7 6 11 11 H 1.09001 * 109.47044 * 54.99276 * 10 9 7 12 12 C 1.50706 * 109.46712 * 294.99413 * 10 9 7 13 13 H 1.08001 * 119.99837 * 334.73152 * 12 10 9 14 14 C 1.37875 * 119.99592 * 154.72763 * 12 10 9 15 15 N 1.31514 * 119.99551 * 184.85850 * 14 12 10 16 16 Si 1.86794 * 120.00248 * 4.85852 * 14 12 10 17 17 H 1.48502 * 109.46940 * 84.64422 * 16 14 12 18 18 H 1.48504 * 109.47175 * 204.64139 * 16 14 12 19 19 H 1.48500 * 109.47208 * 324.64209 * 16 14 12 20 20 C 1.50695 * 109.47136 * 174.99596 * 10 9 7 21 21 C 1.38240 * 119.99994 * 55.72762 * 20 10 9 22 22 C 1.38237 * 119.99787 * 180.25803 * 21 20 10 23 23 C 1.38236 * 120.00115 * 359.50702 * 22 21 20 24 24 C 1.38232 * 119.99698 * 0.27762 * 23 22 21 25 25 C 1.38230 * 120.00185 * 359.95698 * 24 23 22 26 26 C 1.47158 * 118.03533 * 50.22433 * 6 5 2 27 27 C 1.53297 * 108.38562 * 309.71657 * 26 6 5 28 28 O 1.42952 * 109.51487 * 120.10431 * 2 1 3 29 29 H 1.08998 * 109.46863 * 299.89486 * 1 2 3 30 30 H 1.09003 * 109.46941 * 59.89653 * 1 2 3 31 31 H 1.09003 * 109.47106 * 179.89545 * 1 2 3 32 32 H 1.08999 * 109.62060 * 68.10213 * 5 2 1 33 33 H 1.09001 * 109.52229 * 307.68397 * 5 2 1 34 34 H 1.09000 * 109.47551 * 59.99393 * 9 7 6 35 35 H 1.09007 * 109.47035 * 299.99431 * 9 7 6 36 36 H 0.97004 * 119.99853 * 180.02562 * 15 14 12 37 37 H 1.07998 * 120.00203 * 0.04014 * 21 20 10 38 38 H 1.08007 * 119.99992 * 179.78797 * 22 21 20 39 39 H 1.07994 * 119.99746 * 180.25713 * 23 22 21 40 40 H 1.07997 * 119.99518 * 179.97438 * 24 23 22 41 41 H 1.08007 * 120.00050 * 179.97438 * 25 24 23 42 42 H 1.08996 * 109.67843 * 69.43963 * 26 6 5 43 43 H 1.09004 * 109.68209 * 189.99307 * 26 6 5 44 44 H 1.08998 * 109.51344 * 172.22613 * 27 26 6 45 45 H 1.08997 * 109.51036 * 292.32715 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0217 1.3875 0.0000 4 7 2.4010 2.4583 0.0011 5 6 2.0424 -0.7205 -1.2473 6 7 3.5011 -0.8766 -1.1334 7 6 4.3193 -0.5041 -2.1375 8 8 3.8554 -0.0371 -3.1561 9 6 5.8105 -0.6682 -1.9947 10 6 6.5022 -0.1732 -3.2666 11 1 6.1953 0.8524 -3.4715 12 6 6.1134 -1.0549 -4.4253 13 1 5.8026 -2.0739 -4.2480 14 6 6.1543 -0.5605 -5.7117 15 7 5.7247 -1.2970 -6.7131 16 14 6.8198 1.1551 -6.0323 17 1 8.2990 1.0980 -6.1511 18 1 6.2418 1.6825 -7.2945 19 1 6.4477 2.0488 -4.9062 20 6 7.9964 -0.2223 -3.0774 21 6 8.6091 -1.4083 -2.7182 22 6 9.9792 -1.4520 -2.5394 23 6 10.7377 -0.3121 -2.7297 24 6 10.1255 0.8728 -3.0932 25 6 8.7550 0.9176 -3.2673 26 6 4.0407 -1.4457 0.1118 27 6 3.4313 -0.6849 1.2950 28 8 2.0076 -0.6758 1.1657 29 1 -0.3633 0.5122 0.8909 30 1 -0.3633 0.5155 -0.8891 31 1 -0.3633 -1.0277 -0.0019 32 1 1.8043 -0.1322 -2.1335 33 1 1.5728 -1.7014 -1.3201 34 1 6.0471 -1.7207 -1.8389 35 1 6.1599 -0.0871 -1.1411 36 1 5.7539 -0.9493 -7.6182 37 1 8.0170 -2.2999 -2.5739 38 1 10.4575 -2.3778 -2.2555 39 1 11.8086 -0.3473 -2.5941 40 1 10.7182 1.7633 -3.2415 41 1 8.2766 1.8435 -3.5509 42 1 3.7756 -2.5009 0.1782 43 1 5.1252 -1.3375 0.1252 44 1 3.7091 -1.1777 2.2267 45 1 3.8037 0.3394 1.2998 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000887684390.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:48:22 Heat of formation + Delta-G solvation = -11.889757 kcal Electronic energy + Delta-G solvation = -28454.814184 eV Core-core repulsion = 24631.038313 eV Total energy + Delta-G solvation = -3823.775872 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.66102 -38.96709 -38.20120 -36.28568 -34.71553 -34.22587 -33.42335 -31.70652 -30.28632 -29.27723 -28.96059 -27.12891 -25.40141 -23.87971 -23.13790 -22.47679 -21.90195 -20.02994 -18.72486 -18.19003 -17.14953 -16.96422 -16.43404 -16.02298 -15.61922 -15.45380 -14.93540 -14.63659 -14.26918 -14.24492 -13.92411 -13.78246 -13.52073 -13.26608 -12.84906 -12.77539 -12.74257 -12.59649 -12.49587 -12.37417 -12.23892 -11.98936 -11.94320 -11.80500 -11.70356 -11.19338 -11.03094 -10.74675 -10.61045 -10.52636 -10.38838 -9.92956 -9.62676 -9.23481 -9.08572 -8.51314 -8.44489 -8.25315 -7.84310 -6.02107 -3.98485 2.03730 2.09838 2.37375 2.58370 3.05611 3.25713 3.38820 3.40915 3.42698 3.44129 3.55717 4.31900 4.46576 4.52297 4.59834 4.72440 4.90104 4.97875 5.11734 5.25629 5.29483 5.34932 5.42534 5.46982 5.49390 5.51484 5.63281 5.65372 5.69424 5.78549 5.83381 5.90705 5.98556 6.16748 6.26699 6.43123 6.55969 6.62103 6.65720 6.77129 6.99379 7.09446 7.20138 7.33227 7.54205 7.63663 7.67618 7.76494 8.48317 8.77623 8.96566 9.61170 11.10832 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.013432 B = 0.004156 C = 0.003654 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2084.070420 B = 6735.002844 C = 7660.031845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.205 3.795 3 C 0.183 3.817 4 N -0.405 5.405 5 C 0.096 3.904 6 N -0.636 5.636 7 C 0.520 3.480 8 O -0.489 6.489 9 C -0.112 4.112 10 C 0.048 3.952 11 H 0.053 0.947 12 C -0.483 4.483 13 H 0.072 0.928 14 C 0.084 3.916 15 N -0.896 5.896 16 Si 0.866 3.134 17 H -0.272 1.272 18 H -0.292 1.292 19 H -0.263 1.263 20 C -0.039 4.039 21 C -0.107 4.107 22 C -0.124 4.124 23 C -0.150 4.150 24 C -0.122 4.122 25 C -0.141 4.141 26 C 0.076 3.924 27 C 0.039 3.961 28 O -0.353 6.353 29 H 0.075 0.925 30 H 0.085 0.915 31 H 0.089 0.911 32 H 0.109 0.891 33 H 0.094 0.906 34 H 0.087 0.913 35 H 0.069 0.931 36 H 0.262 0.738 37 H 0.119 0.881 38 H 0.111 0.889 39 H 0.109 0.891 40 H 0.109 0.891 41 H 0.109 0.891 42 H 0.081 0.919 43 H 0.100 0.900 44 H 0.115 0.885 45 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.055 -1.804 17.153 17.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.161 3.839 3 C -0.137 4.137 4 N -0.082 5.082 5 C -0.029 4.029 6 N -0.375 5.375 7 C 0.308 3.692 8 O -0.359 6.359 9 C -0.152 4.152 10 C 0.028 3.972 11 H 0.071 0.929 12 C -0.520 4.520 13 H 0.090 0.910 14 C -0.119 4.119 15 N -0.534 5.534 16 Si 0.695 3.305 17 H -0.197 1.197 18 H -0.219 1.219 19 H -0.189 1.189 20 C -0.040 4.040 21 C -0.125 4.125 22 C -0.142 4.142 23 C -0.168 4.168 24 C -0.140 4.140 25 C -0.160 4.160 26 C -0.048 4.048 27 C -0.038 4.038 28 O -0.270 6.270 29 H 0.094 0.906 30 H 0.103 0.897 31 H 0.108 0.892 32 H 0.127 0.873 33 H 0.112 0.888 34 H 0.106 0.894 35 H 0.087 0.913 36 H 0.072 0.928 37 H 0.137 0.863 38 H 0.129 0.871 39 H 0.127 0.873 40 H 0.127 0.873 41 H 0.127 0.873 42 H 0.099 0.901 43 H 0.118 0.882 44 H 0.133 0.867 45 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -3.866 -0.036 16.465 16.913 hybrid contribution 0.599 0.559 -0.539 0.981 sum -3.267 0.523 15.926 16.266 Atomic orbital electron populations 1.21784 0.88569 1.04943 1.04097 1.19402 0.96084 0.79919 0.88543 1.29809 0.94081 0.95580 0.94186 1.81171 1.07548 1.12744 1.06717 1.22065 0.82059 1.01791 0.96971 1.48350 1.05687 1.66174 1.17261 1.20923 0.89390 0.76909 0.81939 1.90760 1.76741 1.41468 1.26952 1.21640 0.90479 1.02733 1.00361 1.18283 0.86189 0.99499 0.93192 0.92854 1.20583 1.43592 0.98951 0.88850 0.90957 1.24854 0.94073 0.96714 0.96217 1.69879 1.46381 1.37500 0.99604 0.87075 0.79624 0.86190 0.77619 1.19728 1.21876 1.18871 1.20756 0.98616 0.92145 0.92439 1.20919 0.93898 0.97753 0.99925 1.21048 0.94374 0.97602 1.01206 1.20862 0.98841 0.93509 1.03594 1.20965 0.94727 0.97595 1.00685 1.21088 0.93961 0.98435 1.02475 1.22359 1.00430 0.98299 0.83683 1.23166 0.80511 1.00765 0.99350 1.88102 1.21869 1.74863 1.42130 0.90602 0.89667 0.89234 0.87300 0.88810 0.89430 0.91301 0.92782 0.86330 0.87081 0.87312 0.87300 0.87309 0.90106 0.88185 0.86722 0.92597 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.96 8.80 37.16 0.33 -0.63 16 2 C 0.20 2.14 1.05 -93.46 -0.10 2.04 16 3 C 0.18 2.51 12.35 -20.76 -0.26 2.25 16 4 N -0.40 -6.64 18.54 42.15 0.78 -5.86 16 5 C 0.10 1.17 5.25 -3.75 -0.02 1.15 16 6 N -0.64 -9.05 2.77 -172.53 -0.48 -9.53 16 7 C 0.52 9.96 7.46 -10.99 -0.08 9.88 16 8 O -0.49 -11.82 14.45 5.56 0.08 -11.74 16 9 C -0.11 -2.04 3.22 -27.88 -0.09 -2.13 16 10 C 0.05 1.09 1.24 -92.92 -0.12 0.97 16 11 H 0.05 1.34 5.26 -51.93 -0.27 1.07 16 12 C -0.48 -13.17 7.18 -34.44 -0.25 -13.42 16 13 H 0.07 2.12 8.05 -52.49 -0.42 1.70 16 14 C 0.08 2.46 5.47 -17.82 -0.10 2.37 16 15 N -0.90 -27.88 13.96 55.43 0.77 -27.10 16 16 Si 0.87 22.74 24.76 -169.99 -4.21 18.53 16 17 H -0.27 -6.97 7.11 56.52 0.40 -6.57 16 18 H -0.29 -7.73 7.11 56.52 0.40 -7.33 16 19 H -0.26 -6.71 5.95 56.52 0.34 -6.38 16 20 C -0.04 -0.81 4.30 -104.63 -0.45 -1.26 16 21 C -0.11 -2.01 8.93 -39.58 -0.35 -2.36 16 22 C -0.12 -2.06 10.05 -39.58 -0.40 -2.46 16 23 C -0.15 -2.44 10.05 -39.58 -0.40 -2.83 16 24 C -0.12 -2.14 10.05 -39.59 -0.40 -2.54 16 25 C -0.14 -2.86 8.15 -39.59 -0.32 -3.19 16 26 C 0.08 0.76 6.54 -3.53 -0.02 0.74 16 27 C 0.04 0.35 6.69 37.31 0.25 0.60 16 28 O -0.35 -3.48 10.21 -35.23 -0.36 -3.84 16 29 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 30 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 31 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.11 1.55 7.06 -51.93 -0.37 1.18 16 33 H 0.09 0.94 8.13 -51.93 -0.42 0.51 16 34 H 0.09 1.44 7.23 -51.93 -0.38 1.07 16 35 H 0.07 1.07 7.66 -51.92 -0.40 0.68 16 36 H 0.26 7.77 8.31 -40.82 -0.34 7.43 16 37 H 0.12 2.11 7.40 -52.49 -0.39 1.72 16 38 H 0.11 1.52 8.06 -52.48 -0.42 1.09 16 39 H 0.11 1.45 8.06 -52.49 -0.42 1.02 16 40 H 0.11 1.63 8.06 -52.49 -0.42 1.21 16 41 H 0.11 2.22 6.76 -52.48 -0.35 1.87 16 42 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 43 H 0.10 0.93 6.05 -51.93 -0.31 0.61 16 44 H 0.11 0.68 8.14 -51.93 -0.42 0.26 16 45 H 0.06 0.59 7.02 -51.93 -0.36 0.23 16 LS Contribution 365.45 15.07 5.51 5.51 Total: -1.00 -36.03 365.45 -6.94 -42.97 By element: Atomic # 1 Polarization: 8.15 SS G_CDS: -6.26 Total: 1.89 kcal Atomic # 6 Polarization: -8.05 SS G_CDS: -2.77 Total: -10.82 kcal Atomic # 7 Polarization: -43.57 SS G_CDS: 1.08 Total: -42.49 kcal Atomic # 8 Polarization: -15.30 SS G_CDS: -0.28 Total: -15.58 kcal Atomic # 14 Polarization: 22.74 SS G_CDS: -4.21 Total: 18.53 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -36.03 -6.94 -42.97 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000887684390.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.082 kcal (2) G-P(sol) polarization free energy of solvation -36.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.951 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.939 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.972 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.890 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds