Wall clock time and date at job start Tue Mar 31 2020 15:48:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.47200 * 109.51134 * 2 1 4 4 N 2.60802 * 109.50952 * 0.02562 * 2 1 3 5 5 C 1.52884 * 109.58040 * 239.98841 * 2 1 3 6 6 N 1.47148 * 108.60641 * 187.92102 * 5 2 1 7 7 C 1.34776 * 120.98467 * 230.50196 * 6 5 2 8 8 O 1.21277 * 119.99594 * 359.71306 * 7 6 5 9 9 C 1.50698 * 120.00178 * 179.72101 * 7 6 5 10 10 C 1.53006 * 109.47134 * 179.97438 * 9 7 6 11 11 H 1.09001 * 109.47044 * 54.99276 * 10 9 7 12 12 C 1.50706 * 109.46712 * 294.99413 * 10 9 7 13 13 H 1.08001 * 119.99837 * 334.73152 * 12 10 9 14 14 C 1.37875 * 119.99592 * 154.72763 * 12 10 9 15 15 N 1.31514 * 119.99551 * 184.85850 * 14 12 10 16 16 Si 1.86794 * 120.00248 * 4.85852 * 14 12 10 17 17 H 1.48502 * 109.46940 * 84.64422 * 16 14 12 18 18 H 1.48504 * 109.47175 * 204.64139 * 16 14 12 19 19 H 1.48500 * 109.47208 * 324.64209 * 16 14 12 20 20 C 1.50695 * 109.47136 * 174.99596 * 10 9 7 21 21 C 1.38240 * 119.99994 * 55.72762 * 20 10 9 22 22 C 1.38237 * 119.99787 * 180.25803 * 21 20 10 23 23 C 1.38236 * 120.00115 * 359.50702 * 22 21 20 24 24 C 1.38232 * 119.99698 * 0.27762 * 23 22 21 25 25 C 1.38230 * 120.00185 * 359.95698 * 24 23 22 26 26 C 1.47158 * 118.03533 * 50.22433 * 6 5 2 27 27 C 1.53297 * 108.38562 * 309.71657 * 26 6 5 28 28 O 1.42952 * 109.51487 * 120.10431 * 2 1 3 29 29 H 1.08998 * 109.46863 * 299.89486 * 1 2 3 30 30 H 1.09003 * 109.46941 * 59.89653 * 1 2 3 31 31 H 1.09003 * 109.47106 * 179.89545 * 1 2 3 32 32 H 1.08999 * 109.62060 * 68.10213 * 5 2 1 33 33 H 1.09001 * 109.52229 * 307.68397 * 5 2 1 34 34 H 1.09000 * 109.47551 * 59.99393 * 9 7 6 35 35 H 1.09007 * 109.47035 * 299.99431 * 9 7 6 36 36 H 0.97004 * 119.99853 * 180.02562 * 15 14 12 37 37 H 1.07998 * 120.00203 * 0.04014 * 21 20 10 38 38 H 1.08007 * 119.99992 * 179.78797 * 22 21 20 39 39 H 1.07994 * 119.99746 * 180.25713 * 23 22 21 40 40 H 1.07997 * 119.99518 * 179.97438 * 24 23 22 41 41 H 1.08007 * 120.00050 * 179.97438 * 25 24 23 42 42 H 1.08996 * 109.67843 * 69.43963 * 26 6 5 43 43 H 1.09004 * 109.68209 * 189.99307 * 26 6 5 44 44 H 1.08998 * 109.51344 * 172.22613 * 27 26 6 45 45 H 1.08997 * 109.51036 * 292.32715 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0217 1.3875 0.0000 4 7 2.4010 2.4583 0.0011 5 6 2.0424 -0.7205 -1.2473 6 7 3.5011 -0.8766 -1.1334 7 6 4.3193 -0.5041 -2.1375 8 8 3.8554 -0.0371 -3.1561 9 6 5.8105 -0.6682 -1.9947 10 6 6.5022 -0.1732 -3.2666 11 1 6.1953 0.8524 -3.4715 12 6 6.1134 -1.0549 -4.4253 13 1 5.8026 -2.0739 -4.2480 14 6 6.1543 -0.5605 -5.7117 15 7 5.7247 -1.2970 -6.7131 16 14 6.8198 1.1551 -6.0323 17 1 8.2990 1.0980 -6.1511 18 1 6.2418 1.6825 -7.2945 19 1 6.4477 2.0488 -4.9062 20 6 7.9964 -0.2223 -3.0774 21 6 8.6091 -1.4083 -2.7182 22 6 9.9792 -1.4520 -2.5394 23 6 10.7377 -0.3121 -2.7297 24 6 10.1255 0.8728 -3.0932 25 6 8.7550 0.9176 -3.2673 26 6 4.0407 -1.4457 0.1118 27 6 3.4313 -0.6849 1.2950 28 8 2.0076 -0.6758 1.1657 29 1 -0.3633 0.5122 0.8909 30 1 -0.3633 0.5155 -0.8891 31 1 -0.3633 -1.0277 -0.0019 32 1 1.8043 -0.1322 -2.1335 33 1 1.5728 -1.7014 -1.3201 34 1 6.0471 -1.7207 -1.8389 35 1 6.1599 -0.0871 -1.1411 36 1 5.7539 -0.9493 -7.6182 37 1 8.0170 -2.2999 -2.5739 38 1 10.4575 -2.3778 -2.2555 39 1 11.8086 -0.3473 -2.5941 40 1 10.7182 1.7633 -3.2415 41 1 8.2766 1.8435 -3.5509 42 1 3.7756 -2.5009 0.1782 43 1 5.1252 -1.3375 0.1252 44 1 3.7091 -1.1777 2.2267 45 1 3.8037 0.3394 1.2998 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000887684390.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:48:21 Heat of formation + Delta-G solvation = -36.527465 kcal Electronic energy + Delta-G solvation = -28455.882555 eV Core-core repulsion = 24631.038313 eV Total energy + Delta-G solvation = -3824.844243 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.72475 -40.35793 -39.56127 -37.41902 -36.05272 -35.77321 -34.33312 -33.72163 -31.68044 -30.66468 -29.80750 -28.58004 -26.85973 -24.76266 -24.40977 -23.82857 -23.29865 -21.51185 -20.10782 -19.13220 -19.04587 -18.34216 -17.56174 -17.35543 -16.85593 -16.42345 -16.36763 -16.13001 -15.67877 -15.48398 -15.25900 -14.98555 -14.82908 -14.62735 -14.50188 -14.21718 -13.99057 -13.85941 -13.63135 -13.49935 -13.36756 -13.22674 -13.02787 -12.95480 -12.71455 -12.69230 -12.66675 -12.15363 -11.93279 -11.87927 -11.83190 -11.52144 -11.48802 -11.11612 -10.79158 -10.53883 -9.66636 -9.60566 -9.34470 -8.26969 -6.21865 0.62315 0.68479 1.24869 1.26969 1.31858 1.32260 1.49422 1.80102 1.92409 2.32992 2.52718 2.65758 3.02945 3.15921 3.42558 3.68894 3.90970 3.94614 4.03143 4.14149 4.23210 4.25002 4.30674 4.33699 4.41091 4.46819 4.53835 4.67029 4.68218 4.75735 4.80472 4.84095 4.84290 4.90148 5.00718 5.17147 5.23411 5.32072 5.35174 5.47729 5.65301 5.72276 5.77369 5.81493 5.97047 6.25426 6.26623 6.30297 6.38559 6.76090 7.34811 7.39827 8.89901 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.013432 B = 0.004156 C = 0.003654 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2084.070420 B = 6735.002844 C = 7660.031845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.212 3.788 3 C 0.200 3.800 4 N -0.460 5.460 5 C 0.089 3.911 6 N -0.631 5.631 7 C 0.512 3.488 8 O -0.557 6.557 9 C -0.107 4.107 10 C 0.049 3.951 11 H 0.022 0.978 12 C -0.457 4.457 13 H 0.042 0.958 14 C 0.024 3.976 15 N -0.947 5.947 16 Si 0.914 3.086 17 H -0.260 1.260 18 H -0.300 1.300 19 H -0.262 1.262 20 C -0.063 4.063 21 C -0.117 4.117 22 C -0.118 4.118 23 C -0.140 4.140 24 C -0.125 4.125 25 C -0.165 4.165 26 C 0.068 3.932 27 C 0.040 3.960 28 O -0.345 6.345 29 H 0.084 0.916 30 H 0.087 0.913 31 H 0.115 0.885 32 H 0.081 0.919 33 H 0.124 0.876 34 H 0.108 0.892 35 H 0.098 0.902 36 H 0.259 0.741 37 H 0.123 0.877 38 H 0.147 0.853 39 H 0.149 0.851 40 H 0.135 0.865 41 H 0.095 0.905 42 H 0.108 0.892 43 H 0.109 0.891 44 H 0.155 0.845 45 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.404 -3.141 20.465 20.844 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.167 3.833 3 C -0.119 4.119 4 N -0.138 5.138 5 C -0.034 4.034 6 N -0.367 5.367 7 C 0.302 3.698 8 O -0.433 6.433 9 C -0.147 4.147 10 C 0.030 3.970 11 H 0.040 0.960 12 C -0.495 4.495 13 H 0.060 0.940 14 C -0.173 4.173 15 N -0.589 5.589 16 Si 0.742 3.258 17 H -0.185 1.185 18 H -0.227 1.227 19 H -0.187 1.187 20 C -0.063 4.063 21 C -0.135 4.135 22 C -0.136 4.136 23 C -0.158 4.158 24 C -0.143 4.143 25 C -0.184 4.184 26 C -0.054 4.054 27 C -0.037 4.037 28 O -0.261 6.261 29 H 0.103 0.897 30 H 0.106 0.894 31 H 0.134 0.866 32 H 0.100 0.900 33 H 0.142 0.858 34 H 0.126 0.874 35 H 0.116 0.884 36 H 0.068 0.932 37 H 0.141 0.859 38 H 0.165 0.835 39 H 0.166 0.834 40 H 0.153 0.847 41 H 0.113 0.887 42 H 0.126 0.874 43 H 0.128 0.872 44 H 0.173 0.827 45 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -2.209 -1.385 19.872 20.042 hybrid contribution 0.129 0.887 -1.378 1.644 sum -2.080 -0.498 18.494 18.617 Atomic orbital electron populations 1.21888 0.85646 1.06877 1.04742 1.19623 0.97999 0.77713 0.87950 1.30596 0.92627 0.96138 0.92497 1.81173 1.09390 1.14675 1.08547 1.22284 0.81042 1.03180 0.96943 1.48347 1.06353 1.64564 1.17465 1.21129 0.90225 0.76376 0.82084 1.90734 1.77789 1.44842 1.29888 1.21566 0.89869 1.04156 0.99072 1.18108 0.88589 0.96684 0.93613 0.95969 1.20789 1.40788 0.97889 0.90006 0.93993 1.25515 0.95456 0.99667 0.96614 1.70009 1.49808 1.39221 0.99855 0.86304 0.79577 0.83035 0.76870 1.18462 1.22699 1.18687 1.20481 0.96878 0.93738 0.95252 1.21057 0.95381 0.96908 1.00190 1.21460 0.93290 0.99338 0.99489 1.21356 1.00830 0.92461 1.01124 1.21306 0.93654 0.99495 0.99873 1.21163 0.95520 0.97840 1.03845 1.22753 1.01179 0.99667 0.81782 1.23338 0.79858 1.00021 1.00490 1.88138 1.22411 1.74218 1.41369 0.89664 0.89394 0.86645 0.90033 0.85807 0.87428 0.88410 0.93216 0.85950 0.83480 0.83377 0.84702 0.88711 0.87405 0.87239 0.82718 0.94472 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.58 8.80 71.98 0.63 -0.95 16 2 C 0.21 4.08 1.05 -12.64 -0.01 4.07 16 3 C 0.20 5.49 12.35 89.44 1.10 6.59 16 4 N -0.46 -15.52 18.54 20.01 0.37 -15.15 16 5 C 0.09 2.12 5.25 86.22 0.45 2.58 16 6 N -0.63 -17.48 2.77 -818.14 -2.27 -19.75 16 7 C 0.51 20.11 7.46 87.66 0.65 20.76 16 8 O -0.56 -28.53 14.45 -3.02 -0.04 -28.57 16 9 C -0.11 -3.89 3.22 29.85 0.10 -3.79 16 10 C 0.05 2.31 1.24 -12.28 -0.02 2.30 16 11 H 0.02 1.17 5.26 -2.39 -0.01 1.16 16 12 C -0.46 -25.97 7.18 25.60 0.18 -25.79 16 13 H 0.04 2.58 8.05 -2.91 -0.02 2.55 16 14 C 0.02 1.48 5.47 84.65 0.46 1.94 16 15 N -0.95 -61.96 13.96 21.45 0.30 -61.66 16 16 Si 0.91 49.11 24.76 68.60 1.70 50.81 16 17 H -0.26 -13.22 7.11 99.48 0.71 -12.52 16 18 H -0.30 -16.22 7.11 99.48 0.71 -15.52 16 19 H -0.26 -13.78 5.95 99.48 0.59 -13.19 16 20 C -0.06 -2.60 4.30 -19.87 -0.09 -2.69 16 21 C -0.12 -4.17 8.93 22.27 0.20 -3.97 16 22 C -0.12 -3.43 10.05 22.27 0.22 -3.20 16 23 C -0.14 -3.90 10.05 22.27 0.22 -3.68 16 24 C -0.13 -4.04 10.05 22.27 0.22 -3.81 16 25 C -0.17 -6.56 8.15 22.27 0.18 -6.38 16 26 C 0.07 1.17 6.54 86.35 0.57 1.73 16 27 C 0.04 0.59 6.69 72.08 0.48 1.07 16 28 O -0.35 -5.73 10.21 -148.98 -1.52 -7.25 16 29 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 30 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 31 H 0.11 0.81 8.14 -2.39 -0.02 0.79 16 32 H 0.08 2.44 7.06 -2.39 -0.02 2.42 16 33 H 0.12 2.21 8.13 -2.39 -0.02 2.19 16 34 H 0.11 3.43 7.23 -2.39 -0.02 3.41 16 35 H 0.10 2.95 7.66 -2.38 -0.02 2.93 16 36 H 0.26 16.18 8.31 -92.71 -0.77 15.41 16 37 H 0.12 4.15 7.40 -2.91 -0.02 4.13 16 38 H 0.15 3.21 8.06 -2.91 -0.02 3.19 16 39 H 0.15 3.01 8.06 -2.91 -0.02 2.98 16 40 H 0.14 3.56 8.06 -2.91 -0.02 3.54 16 41 H 0.09 3.93 6.76 -2.91 -0.02 3.91 16 42 H 0.11 1.37 8.14 -2.39 -0.02 1.36 16 43 H 0.11 1.69 6.05 -2.39 -0.01 1.67 16 44 H 0.16 1.11 8.14 -2.39 -0.02 1.09 16 45 H 0.04 0.72 7.02 -2.39 -0.02 0.70 16 Total: -1.00 -85.71 365.45 4.99 -80.71 By element: Atomic # 1 Polarization: 13.19 SS G_CDS: 0.89 Total: 14.08 kcal Atomic # 6 Polarization: -18.79 SS G_CDS: 5.57 Total: -13.22 kcal Atomic # 7 Polarization: -94.96 SS G_CDS: -1.60 Total: -96.56 kcal Atomic # 8 Polarization: -34.25 SS G_CDS: -1.56 Total: -35.82 kcal Atomic # 14 Polarization: 49.11 SS G_CDS: 1.70 Total: 50.81 kcal Total: -85.71 4.99 -80.71 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000887684390.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.184 kcal (2) G-P(sol) polarization free energy of solvation -85.706 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.995 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.711 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.527 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds