Wall clock time and date at job start Tue Mar 31 2020 15:48:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.47193 * 109.51078 * 2 1 4 4 N 2.60794 * 109.51221 * 0.02562 * 2 1 3 5 5 C 1.53295 * 109.50757 * 239.90128 * 2 1 3 6 6 N 1.47158 * 108.37711 * 187.77603 * 5 2 1 7 7 C 1.34777 * 120.97962 * 230.50578 * 6 5 2 8 8 O 1.21282 * 119.99737 * 0.02562 * 7 6 5 9 9 C 1.50700 * 120.00194 * 180.02562 * 7 6 5 10 10 C 1.52999 * 109.47010 * 180.02562 * 9 7 6 11 11 H 1.08995 * 109.47465 * 305.00010 * 10 9 7 12 12 C 1.50698 * 109.47080 * 65.00685 * 10 9 7 13 13 H 1.08002 * 120.00223 * 26.94016 * 12 10 9 14 14 C 1.37886 * 120.00006 * 206.93845 * 12 10 9 15 15 N 1.31507 * 120.00030 * 186.61954 * 14 12 10 16 16 Si 1.86801 * 119.99698 * 6.90022 * 14 12 10 17 17 H 1.48503 * 109.46742 * 274.25466 * 16 14 12 18 18 H 1.48504 * 109.47191 * 34.25328 * 16 14 12 19 19 H 1.48499 * 109.46928 * 154.25467 * 16 14 12 20 20 C 1.50706 * 109.46940 * 184.99987 * 10 9 7 21 21 C 1.38233 * 119.99857 * 297.92917 * 20 10 9 22 22 C 1.38240 * 119.99757 * 179.78388 * 21 20 10 23 23 C 1.38239 * 119.99979 * 0.44453 * 22 21 20 24 24 C 1.38242 * 120.00017 * 359.80708 * 23 22 21 25 25 C 1.38230 * 119.99928 * 118.19592 * 20 10 9 26 26 C 1.47144 * 118.03941 * 50.79041 * 6 5 2 27 27 C 1.53723 * 108.15857 * 309.15427 * 26 6 5 28 28 O 1.42958 * 109.50831 * 120.15484 * 2 1 3 29 29 H 1.08998 * 109.47593 * 180.10216 * 1 2 3 30 30 H 1.09002 * 109.47053 * 300.10079 * 1 2 3 31 31 H 1.09004 * 109.47125 * 60.09745 * 1 2 3 32 32 H 1.08996 * 109.68540 * 68.05338 * 5 2 1 33 33 H 1.08996 * 109.71197 * 307.51251 * 5 2 1 34 34 H 1.09000 * 109.46914 * 60.00574 * 9 7 6 35 35 H 1.09000 * 109.47087 * 300.00639 * 9 7 6 36 36 H 0.96994 * 119.99996 * 180.27656 * 15 14 12 37 37 H 1.07994 * 120.00554 * 359.97438 * 21 20 10 38 38 H 1.07996 * 120.00426 * 180.26872 * 22 21 20 39 39 H 1.08000 * 120.00114 * 179.82966 * 23 22 21 40 40 H 1.07993 * 120.00100 * 180.02562 * 24 23 22 41 41 H 1.07999 * 120.00162 * 359.97438 * 25 20 10 42 42 H 1.08996 * 109.68807 * 68.93055 * 26 6 5 43 43 H 1.09005 * 109.68421 * 189.49130 * 26 6 5 44 44 H 1.09000 * 109.65503 * 292.57249 * 27 26 6 45 45 H 1.08997 * 109.48043 * 172.40055 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0216 1.3874 0.0000 4 7 2.4011 2.4582 0.0011 5 6 2.0419 -0.7246 -1.2501 6 7 3.5011 -0.8757 -1.1340 7 6 4.3192 -0.5033 -2.1382 8 8 3.8553 -0.0354 -3.1564 9 6 5.8104 -0.6684 -1.9959 10 6 6.5020 -0.1723 -3.2673 11 1 6.0879 -0.6906 -4.1321 12 6 6.2775 1.3105 -3.4152 13 1 6.1065 1.9208 -2.5407 14 6 6.2904 1.8882 -4.6672 15 7 6.2250 3.1961 -4.7886 16 14 6.3928 0.8127 -6.1910 17 1 7.8160 0.5109 -6.4891 18 1 5.6574 -0.4552 -5.9524 19 1 5.7866 1.5274 -7.3429 20 6 7.9805 -0.4497 -3.1757 21 6 8.7336 0.1390 -2.1773 22 6 10.0890 -0.1190 -2.0906 23 6 10.6928 -0.9585 -3.0080 24 6 9.9405 -1.5432 -4.0097 25 6 8.5844 -1.2886 -4.0936 26 6 4.0402 -1.4512 0.1084 27 6 3.4311 -0.6861 1.2945 28 8 2.0074 -0.6769 1.1652 29 1 -0.3634 -1.0276 0.0018 30 1 -0.3633 0.5154 0.8891 31 1 -0.3633 0.5123 -0.8909 32 1 1.8030 -0.1389 -2.1377 33 1 1.5757 -1.7072 -1.3223 34 1 6.0462 -1.7213 -1.8409 35 1 6.1603 -0.0882 -1.1422 36 1 6.2301 3.6022 -5.6693 37 1 8.2628 0.7981 -1.4630 38 1 10.6767 0.3375 -1.3080 39 1 11.7522 -1.1580 -2.9420 40 1 10.4121 -2.1994 -4.7261 41 1 7.9966 -1.7455 -4.8760 42 1 3.7717 -2.5057 0.1713 43 1 5.1251 -1.3467 0.1209 44 1 3.8029 0.3385 1.2997 45 1 3.7089 -1.1790 2.2261 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000887684391.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:48:25 Heat of formation + Delta-G solvation = -13.634314 kcal Electronic energy + Delta-G solvation = -28526.824541 eV Core-core repulsion = 24702.973020 eV Total energy + Delta-G solvation = -3823.851521 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.59996 -38.92751 -38.17830 -36.12753 -34.70282 -34.20244 -33.34002 -31.68315 -30.24239 -29.27514 -28.90403 -27.11213 -25.35383 -23.84099 -23.11990 -22.45119 -21.85680 -20.00097 -18.71380 -18.13328 -17.10799 -16.93477 -16.45909 -15.99622 -15.59562 -15.39177 -14.92394 -14.51588 -14.29272 -14.12529 -13.90011 -13.69325 -13.43704 -13.29663 -12.76648 -12.69552 -12.67210 -12.57783 -12.48442 -12.28863 -12.19611 -11.94043 -11.89785 -11.76101 -11.72672 -11.17734 -10.97936 -10.82445 -10.53582 -10.48065 -10.37727 -9.93263 -9.63630 -9.20916 -9.03803 -8.50585 -8.42008 -8.23970 -7.85380 -5.99769 -3.96539 2.06318 2.11635 2.51805 2.75836 3.07254 3.25391 3.39084 3.44611 3.46997 3.50058 3.67152 4.35593 4.49048 4.54128 4.64215 4.76004 4.94978 4.99158 5.15267 5.29828 5.31826 5.37901 5.46452 5.48481 5.49558 5.52978 5.64954 5.65702 5.70084 5.81613 5.84825 5.90134 6.01294 6.19972 6.28372 6.44162 6.57720 6.66352 6.67915 6.79298 6.99490 7.11384 7.22593 7.51983 7.55270 7.63817 7.68834 7.79321 8.50639 8.76728 8.99560 9.63558 11.13312 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.013568 B = 0.004277 C = 0.003707 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2063.173311 B = 6545.554965 C = 7551.032678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.207 3.793 3 C 0.173 3.827 4 N -0.390 5.390 5 C 0.096 3.904 6 N -0.636 5.636 7 C 0.520 3.480 8 O -0.491 6.491 9 C -0.113 4.113 10 C 0.048 3.952 11 H 0.054 0.946 12 C -0.485 4.485 13 H 0.070 0.930 14 C 0.084 3.916 15 N -0.896 5.896 16 Si 0.867 3.133 17 H -0.274 1.274 18 H -0.261 1.261 19 H -0.291 1.291 20 C -0.039 4.039 21 C -0.101 4.101 22 C -0.126 4.126 23 C -0.149 4.149 24 C -0.124 4.124 25 C -0.138 4.138 26 C 0.077 3.923 27 C 0.039 3.961 28 O -0.354 6.354 29 H 0.087 0.913 30 H 0.075 0.925 31 H 0.084 0.916 32 H 0.109 0.891 33 H 0.092 0.908 34 H 0.072 0.928 35 H 0.084 0.916 36 H 0.262 0.738 37 H 0.118 0.882 38 H 0.110 0.890 39 H 0.108 0.892 40 H 0.109 0.891 41 H 0.108 0.892 42 H 0.079 0.921 43 H 0.100 0.900 44 H 0.059 0.941 45 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.336 -14.106 11.802 19.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.162 3.838 3 C -0.147 4.147 4 N -0.067 5.067 5 C -0.029 4.029 6 N -0.375 5.375 7 C 0.309 3.691 8 O -0.362 6.362 9 C -0.153 4.153 10 C 0.029 3.971 11 H 0.072 0.928 12 C -0.522 4.522 13 H 0.088 0.912 14 C -0.118 4.118 15 N -0.534 5.534 16 Si 0.695 3.305 17 H -0.200 1.200 18 H -0.186 1.186 19 H -0.218 1.218 20 C -0.040 4.040 21 C -0.119 4.119 22 C -0.144 4.144 23 C -0.167 4.167 24 C -0.142 4.142 25 C -0.157 4.157 26 C -0.047 4.047 27 C -0.039 4.039 28 O -0.271 6.271 29 H 0.106 0.894 30 H 0.094 0.906 31 H 0.103 0.897 32 H 0.127 0.873 33 H 0.110 0.890 34 H 0.090 0.910 35 H 0.102 0.898 36 H 0.072 0.928 37 H 0.136 0.864 38 H 0.128 0.872 39 H 0.126 0.874 40 H 0.127 0.873 41 H 0.126 0.874 42 H 0.097 0.903 43 H 0.118 0.882 44 H 0.077 0.923 45 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -5.124 -12.151 11.198 17.300 hybrid contribution 0.311 -0.547 -1.022 1.200 sum -4.813 -12.698 10.175 16.968 Atomic orbital electron populations 1.21776 0.88730 1.04699 1.04162 1.19385 0.95922 0.80128 0.88317 1.29684 0.94584 0.95590 0.94813 1.81241 1.06781 1.12681 1.06023 1.22148 0.81923 1.01465 0.97322 1.48371 1.05716 1.65912 1.17512 1.20941 0.89368 0.76538 0.82275 1.90747 1.76717 1.40507 1.28184 1.21652 0.90531 1.00825 1.02282 1.18251 0.86544 0.98774 0.93532 0.92785 1.20576 1.48134 0.89095 0.94358 0.91209 1.24878 0.93741 0.94523 0.98699 1.69895 1.50305 1.09479 1.23706 0.86960 0.78489 0.81704 0.83304 1.19971 1.18600 1.21777 1.20748 0.98861 0.91671 0.92712 1.20941 0.93197 0.98751 0.99030 1.21057 0.95196 0.98931 0.99207 1.20866 0.98875 1.00107 0.96866 1.20958 0.94265 1.00551 0.98417 1.21052 0.94797 0.99954 0.99862 1.22438 1.00501 0.97902 0.83841 1.23239 0.80502 1.00975 0.99151 1.88086 1.21873 1.74840 1.42291 0.89429 0.90587 0.89695 0.87306 0.89041 0.90990 0.89787 0.92799 0.86355 0.87154 0.87360 0.87309 0.87372 0.90259 0.88181 0.92309 0.86819 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.02 8.81 37.16 0.33 -0.69 16 2 C 0.21 2.30 1.05 -93.26 -0.10 2.20 16 3 C 0.17 2.66 12.36 -20.76 -0.26 2.41 16 4 N -0.39 -7.36 18.54 42.15 0.78 -6.58 16 5 C 0.10 1.17 5.28 -3.53 -0.02 1.15 16 6 N -0.64 -9.05 2.76 -172.02 -0.47 -9.52 16 7 C 0.52 9.93 7.46 -10.99 -0.08 9.85 16 8 O -0.49 -11.78 14.45 5.56 0.08 -11.70 16 9 C -0.11 -2.05 3.30 -27.88 -0.09 -2.15 16 10 C 0.05 1.10 1.21 -92.92 -0.11 0.98 16 11 H 0.05 1.32 4.87 -51.93 -0.25 1.07 16 12 C -0.48 -13.50 6.97 -34.44 -0.24 -13.74 16 13 H 0.07 2.14 8.06 -52.49 -0.42 1.72 16 14 C 0.08 2.51 5.47 -17.82 -0.10 2.41 16 15 N -0.90 -28.53 13.96 55.43 0.77 -27.75 16 16 Si 0.87 22.81 26.62 -169.99 -4.52 18.28 16 17 H -0.27 -7.00 7.11 56.52 0.40 -6.60 16 18 H -0.26 -6.65 6.29 56.52 0.36 -6.29 16 19 H -0.29 -7.72 7.11 56.52 0.40 -7.32 16 20 C -0.04 -0.82 4.52 -104.62 -0.47 -1.29 16 21 C -0.10 -1.96 8.86 -39.58 -0.35 -2.31 16 22 C -0.13 -2.14 10.05 -39.58 -0.40 -2.53 16 23 C -0.15 -2.42 10.05 -39.58 -0.40 -2.82 16 24 C -0.12 -2.12 10.05 -39.58 -0.40 -2.52 16 25 C -0.14 -2.71 9.08 -39.58 -0.36 -3.07 16 26 C 0.08 0.77 6.57 -3.31 -0.02 0.75 16 27 C 0.04 0.37 6.71 37.53 0.25 0.62 16 28 O -0.35 -3.67 10.21 -35.23 -0.36 -4.03 16 29 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 31 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 32 H 0.11 1.57 7.07 -51.93 -0.37 1.20 16 33 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.07 1.07 8.01 -51.93 -0.42 0.66 16 35 H 0.08 1.45 7.21 -51.93 -0.37 1.08 16 36 H 0.26 7.92 8.31 -40.82 -0.34 7.58 16 37 H 0.12 2.28 7.72 -52.49 -0.40 1.88 16 38 H 0.11 1.58 8.06 -52.49 -0.42 1.15 16 39 H 0.11 1.44 8.06 -52.49 -0.42 1.02 16 40 H 0.11 1.57 8.06 -52.49 -0.42 1.14 16 41 H 0.11 2.06 7.91 -52.49 -0.42 1.64 16 42 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 43 H 0.10 0.95 6.05 -51.93 -0.31 0.63 16 44 H 0.06 0.70 7.02 -51.93 -0.36 0.33 16 45 H 0.11 0.73 8.14 -51.93 -0.42 0.31 16 LS Contribution 370.07 15.07 5.58 5.58 Total: -1.00 -37.02 370.07 -7.28 -44.30 By element: Atomic # 1 Polarization: 8.49 SS G_CDS: -6.32 Total: 2.17 kcal Atomic # 6 Polarization: -7.93 SS G_CDS: -2.82 Total: -10.75 kcal Atomic # 7 Polarization: -44.94 SS G_CDS: 1.08 Total: -43.85 kcal Atomic # 8 Polarization: -15.46 SS G_CDS: -0.28 Total: -15.74 kcal Atomic # 14 Polarization: 22.81 SS G_CDS: -4.52 Total: 18.28 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -37.02 -7.28 -44.30 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000887684391.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.670 kcal (2) G-P(sol) polarization free energy of solvation -37.022 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.352 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.304 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds