Wall clock time and date at job start Tue Mar 31 2020 15:48:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.47193 * 109.51078 * 2 1 4 4 N 2.60794 * 109.51221 * 0.02562 * 2 1 3 5 5 C 1.53295 * 109.50757 * 239.90128 * 2 1 3 6 6 N 1.47158 * 108.37711 * 187.77603 * 5 2 1 7 7 C 1.34777 * 120.97962 * 230.50578 * 6 5 2 8 8 O 1.21282 * 119.99737 * 0.02562 * 7 6 5 9 9 C 1.50700 * 120.00194 * 180.02562 * 7 6 5 10 10 C 1.52999 * 109.47010 * 180.02562 * 9 7 6 11 11 H 1.08995 * 109.47465 * 305.00010 * 10 9 7 12 12 C 1.50698 * 109.47080 * 65.00685 * 10 9 7 13 13 H 1.08002 * 120.00223 * 26.94016 * 12 10 9 14 14 C 1.37886 * 120.00006 * 206.93845 * 12 10 9 15 15 N 1.31507 * 120.00030 * 186.61954 * 14 12 10 16 16 Si 1.86801 * 119.99698 * 6.90022 * 14 12 10 17 17 H 1.48503 * 109.46742 * 274.25466 * 16 14 12 18 18 H 1.48504 * 109.47191 * 34.25328 * 16 14 12 19 19 H 1.48499 * 109.46928 * 154.25467 * 16 14 12 20 20 C 1.50706 * 109.46940 * 184.99987 * 10 9 7 21 21 C 1.38233 * 119.99857 * 297.92917 * 20 10 9 22 22 C 1.38240 * 119.99757 * 179.78388 * 21 20 10 23 23 C 1.38239 * 119.99979 * 0.44453 * 22 21 20 24 24 C 1.38242 * 120.00017 * 359.80708 * 23 22 21 25 25 C 1.38230 * 119.99928 * 118.19592 * 20 10 9 26 26 C 1.47144 * 118.03941 * 50.79041 * 6 5 2 27 27 C 1.53723 * 108.15857 * 309.15427 * 26 6 5 28 28 O 1.42958 * 109.50831 * 120.15484 * 2 1 3 29 29 H 1.08998 * 109.47593 * 180.10216 * 1 2 3 30 30 H 1.09002 * 109.47053 * 300.10079 * 1 2 3 31 31 H 1.09004 * 109.47125 * 60.09745 * 1 2 3 32 32 H 1.08996 * 109.68540 * 68.05338 * 5 2 1 33 33 H 1.08996 * 109.71197 * 307.51251 * 5 2 1 34 34 H 1.09000 * 109.46914 * 60.00574 * 9 7 6 35 35 H 1.09000 * 109.47087 * 300.00639 * 9 7 6 36 36 H 0.96994 * 119.99996 * 180.27656 * 15 14 12 37 37 H 1.07994 * 120.00554 * 359.97438 * 21 20 10 38 38 H 1.07996 * 120.00426 * 180.26872 * 22 21 20 39 39 H 1.08000 * 120.00114 * 179.82966 * 23 22 21 40 40 H 1.07993 * 120.00100 * 180.02562 * 24 23 22 41 41 H 1.07999 * 120.00162 * 359.97438 * 25 20 10 42 42 H 1.08996 * 109.68807 * 68.93055 * 26 6 5 43 43 H 1.09005 * 109.68421 * 189.49130 * 26 6 5 44 44 H 1.09000 * 109.65503 * 292.57249 * 27 26 6 45 45 H 1.08997 * 109.48043 * 172.40055 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0216 1.3874 0.0000 4 7 2.4011 2.4582 0.0011 5 6 2.0419 -0.7246 -1.2501 6 7 3.5011 -0.8757 -1.1340 7 6 4.3192 -0.5033 -2.1382 8 8 3.8553 -0.0354 -3.1564 9 6 5.8104 -0.6684 -1.9959 10 6 6.5020 -0.1723 -3.2673 11 1 6.0879 -0.6906 -4.1321 12 6 6.2775 1.3105 -3.4152 13 1 6.1065 1.9208 -2.5407 14 6 6.2904 1.8882 -4.6672 15 7 6.2250 3.1961 -4.7886 16 14 6.3928 0.8127 -6.1910 17 1 7.8160 0.5109 -6.4891 18 1 5.6574 -0.4552 -5.9524 19 1 5.7866 1.5274 -7.3429 20 6 7.9805 -0.4497 -3.1757 21 6 8.7336 0.1390 -2.1773 22 6 10.0890 -0.1190 -2.0906 23 6 10.6928 -0.9585 -3.0080 24 6 9.9405 -1.5432 -4.0097 25 6 8.5844 -1.2886 -4.0936 26 6 4.0402 -1.4512 0.1084 27 6 3.4311 -0.6861 1.2945 28 8 2.0074 -0.6769 1.1652 29 1 -0.3634 -1.0276 0.0018 30 1 -0.3633 0.5154 0.8891 31 1 -0.3633 0.5123 -0.8909 32 1 1.8030 -0.1389 -2.1377 33 1 1.5757 -1.7072 -1.3223 34 1 6.0462 -1.7213 -1.8409 35 1 6.1603 -0.0882 -1.1422 36 1 6.2301 3.6022 -5.6693 37 1 8.2628 0.7981 -1.4630 38 1 10.6767 0.3375 -1.3080 39 1 11.7522 -1.1580 -2.9420 40 1 10.4121 -2.1994 -4.7261 41 1 7.9966 -1.7455 -4.8760 42 1 3.7717 -2.5057 0.1713 43 1 5.1251 -1.3467 0.1209 44 1 3.8029 0.3385 1.2997 45 1 3.7089 -1.1790 2.2261 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000887684391.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:48:24 Heat of formation + Delta-G solvation = -39.157054 kcal Electronic energy + Delta-G solvation = -28527.931290 eV Core-core repulsion = 24702.973020 eV Total energy + Delta-G solvation = -3824.958270 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.70037 -40.32683 -39.54814 -37.41834 -36.05122 -35.76686 -34.30676 -33.72849 -31.63897 -30.66576 -29.78144 -28.59042 -26.84419 -24.77430 -24.43701 -23.81085 -23.26540 -21.49246 -20.11534 -19.13088 -19.06198 -18.34913 -17.57236 -17.33668 -16.79401 -16.60059 -16.23738 -15.92497 -15.83646 -15.44254 -15.24032 -14.95810 -14.85816 -14.60061 -14.51611 -14.14756 -13.98737 -13.85690 -13.66436 -13.50221 -13.36335 -13.16623 -13.08319 -12.89044 -12.78945 -12.70154 -12.64172 -12.11291 -11.93776 -11.88482 -11.84276 -11.52366 -11.49192 -11.08698 -10.75000 -10.58237 -9.65264 -9.59713 -9.34188 -8.28259 -6.25187 0.65066 0.70014 1.24583 1.29983 1.34146 1.37593 1.53056 1.78182 1.95198 2.34061 2.54125 2.67197 3.03274 3.16678 3.42127 3.68912 3.91000 3.93891 4.07138 4.14473 4.24613 4.27393 4.31633 4.37564 4.41659 4.44438 4.57812 4.65405 4.67688 4.76301 4.82299 4.83976 4.85114 4.89790 5.01669 5.16485 5.23237 5.34196 5.36314 5.47952 5.63348 5.73964 5.78566 5.80774 5.98287 6.25619 6.29889 6.31696 6.38159 6.73775 7.34209 7.37594 8.89632 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.013568 B = 0.004277 C = 0.003707 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2063.173311 B = 6545.554965 C = 7551.032678 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.210 3.790 3 C 0.196 3.804 4 N -0.466 5.466 5 C 0.091 3.909 6 N -0.632 5.632 7 C 0.513 3.487 8 O -0.556 6.556 9 C -0.108 4.108 10 C 0.051 3.949 11 H 0.038 0.962 12 C -0.461 4.461 13 H 0.022 0.978 14 C 0.018 3.982 15 N -0.956 5.956 16 Si 0.925 3.075 17 H -0.257 1.257 18 H -0.251 1.251 19 H -0.298 1.298 20 C -0.062 4.062 21 C -0.119 4.119 22 C -0.124 4.124 23 C -0.139 4.139 24 C -0.122 4.122 25 C -0.155 4.155 26 C 0.070 3.930 27 C 0.037 3.963 28 O -0.343 6.343 29 H 0.121 0.879 30 H 0.081 0.919 31 H 0.086 0.914 32 H 0.080 0.920 33 H 0.136 0.864 34 H 0.113 0.887 35 H 0.088 0.912 36 H 0.259 0.741 37 H 0.105 0.895 38 H 0.139 0.861 39 H 0.148 0.852 40 H 0.142 0.858 41 H 0.109 0.891 42 H 0.119 0.881 43 H 0.106 0.894 44 H 0.028 0.972 45 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.166 -18.586 13.243 23.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.165 3.835 3 C -0.123 4.123 4 N -0.144 5.144 5 C -0.033 4.033 6 N -0.368 5.368 7 C 0.302 3.698 8 O -0.432 6.432 9 C -0.148 4.148 10 C 0.031 3.969 11 H 0.056 0.944 12 C -0.499 4.499 13 H 0.040 0.960 14 C -0.178 4.178 15 N -0.597 5.597 16 Si 0.751 3.249 17 H -0.182 1.182 18 H -0.175 1.175 19 H -0.225 1.225 20 C -0.063 4.063 21 C -0.138 4.138 22 C -0.141 4.141 23 C -0.157 4.157 24 C -0.140 4.140 25 C -0.173 4.173 26 C -0.051 4.051 27 C -0.040 4.040 28 O -0.259 6.259 29 H 0.139 0.861 30 H 0.100 0.900 31 H 0.105 0.895 32 H 0.098 0.902 33 H 0.154 0.846 34 H 0.131 0.869 35 H 0.106 0.894 36 H 0.068 0.932 37 H 0.123 0.877 38 H 0.157 0.843 39 H 0.166 0.834 40 H 0.160 0.840 41 H 0.127 0.873 42 H 0.137 0.863 43 H 0.124 0.876 44 H 0.046 0.954 45 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -3.955 -16.693 12.717 21.355 hybrid contribution -0.002 0.757 -1.263 1.473 sum -3.957 -15.935 11.454 20.020 Atomic orbital electron populations 1.21884 0.85499 1.07043 1.04596 1.19775 0.98070 0.77346 0.88295 1.30771 0.92628 0.96363 0.92531 1.81247 1.09278 1.15329 1.08526 1.22409 0.80866 1.03361 0.96632 1.48372 1.06436 1.64361 1.17643 1.21115 0.90123 0.76012 0.82520 1.90718 1.77729 1.43767 1.31017 1.21573 0.89988 1.03138 1.00096 1.18099 0.88878 0.94773 0.95114 0.94422 1.20763 1.45288 0.91665 0.92181 0.96006 1.25685 0.94607 0.95494 1.02049 1.70062 1.54202 1.11491 1.23977 0.86044 0.79284 0.80189 0.79408 1.18190 1.17541 1.22545 1.20457 0.97215 0.94046 0.94563 1.20963 0.94686 0.99122 0.98991 1.21391 0.94116 0.98599 1.00041 1.21348 1.00722 0.98238 0.95359 1.21350 0.93170 1.00400 0.99055 1.21198 0.96281 1.00289 0.99516 1.22833 1.00978 0.99695 0.81623 1.23415 0.80000 0.99723 1.00858 1.88124 1.22252 1.74006 1.41543 0.86070 0.90008 0.89523 0.90191 0.84636 0.86861 0.89410 0.93241 0.87728 0.84342 0.83433 0.84033 0.87338 0.86338 0.87628 0.95384 0.82656 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.68 8.81 71.98 0.63 -1.04 16 2 C 0.21 4.37 1.05 -12.50 -0.01 4.36 16 3 C 0.20 6.26 12.36 89.44 1.11 7.36 16 4 N -0.47 -18.87 18.54 20.00 0.37 -18.50 16 5 C 0.09 2.11 5.28 86.35 0.46 2.57 16 6 N -0.63 -17.35 2.76 -816.53 -2.25 -19.61 16 7 C 0.51 20.01 7.46 87.66 0.65 20.66 16 8 O -0.56 -28.12 14.45 -3.03 -0.04 -28.17 16 9 C -0.11 -3.96 3.30 29.85 0.10 -3.86 16 10 C 0.05 2.35 1.21 -12.29 -0.01 2.34 16 11 H 0.04 1.87 4.87 -2.39 -0.01 1.86 16 12 C -0.46 -27.24 6.97 25.60 0.18 -27.06 16 13 H 0.02 1.45 8.06 -2.91 -0.02 1.43 16 14 C 0.02 1.10 5.47 84.66 0.46 1.57 16 15 N -0.96 -64.84 13.96 21.45 0.30 -64.54 16 16 Si 0.92 48.95 26.62 68.60 1.83 50.77 16 17 H -0.26 -12.73 7.11 99.48 0.71 -12.02 16 18 H -0.25 -12.70 6.29 99.48 0.63 -12.08 16 19 H -0.30 -15.93 7.11 99.48 0.71 -15.23 16 20 C -0.06 -2.57 4.52 -19.87 -0.09 -2.66 16 21 C -0.12 -4.57 8.86 22.27 0.20 -4.37 16 22 C -0.12 -3.83 10.05 22.27 0.22 -3.61 16 23 C -0.14 -3.87 10.05 22.27 0.22 -3.65 16 24 C -0.12 -3.69 10.05 22.27 0.22 -3.47 16 25 C -0.15 -5.74 9.08 22.27 0.20 -5.54 16 26 C 0.07 1.21 6.57 86.50 0.57 1.77 16 27 C 0.04 0.62 6.71 72.23 0.48 1.10 16 28 O -0.34 -6.09 10.21 -148.98 -1.52 -7.61 16 29 H 0.12 0.78 8.14 -2.39 -0.02 0.76 16 30 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 31 H 0.09 1.10 8.14 -2.38 -0.02 1.08 16 32 H 0.08 2.38 7.07 -2.39 -0.02 2.36 16 33 H 0.14 2.00 8.14 -2.39 -0.02 1.98 16 34 H 0.11 3.15 8.01 -2.39 -0.02 3.13 16 35 H 0.09 3.11 7.21 -2.39 -0.02 3.09 16 36 H 0.26 16.68 8.31 -92.71 -0.77 15.91 16 37 H 0.10 4.17 7.72 -2.91 -0.02 4.15 16 38 H 0.14 3.46 8.06 -2.91 -0.02 3.44 16 39 H 0.15 3.00 8.06 -2.91 -0.02 2.98 16 40 H 0.14 3.34 8.06 -2.91 -0.02 3.31 16 41 H 0.11 3.94 7.91 -2.91 -0.02 3.91 16 42 H 0.12 1.24 8.14 -2.39 -0.02 1.22 16 43 H 0.11 1.72 6.05 -2.38 -0.01 1.70 16 44 H 0.03 0.65 7.02 -2.39 -0.02 0.64 16 45 H 0.16 1.34 8.14 -2.39 -0.02 1.33 16 Total: -1.00 -90.43 370.07 5.19 -85.24 By element: Atomic # 1 Polarization: 15.02 SS G_CDS: 0.92 Total: 15.94 kcal Atomic # 6 Polarization: -19.12 SS G_CDS: 5.59 Total: -13.52 kcal Atomic # 7 Polarization: -101.07 SS G_CDS: -1.58 Total: -102.65 kcal Atomic # 8 Polarization: -34.21 SS G_CDS: -1.56 Total: -35.78 kcal Atomic # 14 Polarization: 48.95 SS G_CDS: 1.83 Total: 50.77 kcal Total: -90.43 5.19 -85.24 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000887684391.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.084 kcal (2) G-P(sol) polarization free energy of solvation -90.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.191 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.241 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds