Wall clock time and date at job start Tue Mar 31 2020 15:10:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38129 * 126.29708 * 2 1 4 4 C 1.47275 * 126.42804 * 0.02562 * 3 2 1 5 5 O 1.21533 * 119.99945 * 359.72736 * 4 3 2 6 6 O 1.34783 * 120.00055 * 180.02562 * 4 3 2 7 7 C 1.35915 * 117.00075 * 175.51943 * 6 4 3 8 8 C 1.38753 * 120.05587 * 94.20965 * 7 6 4 9 9 C 1.38122 * 119.93633 * 179.77089 * 8 7 6 10 10 C 1.50704 * 119.97079 * 180.27432 * 9 8 7 11 11 C 1.38286 * 120.06146 * 0.50740 * 9 8 7 12 12 C 1.38249 * 120.11034 * 359.74337 * 11 9 8 13 13 C 1.50704 * 119.97115 * 179.97438 * 12 11 9 14 14 C 1.38159 * 120.05626 * 0.02562 * 12 11 9 15 15 C 1.50701 * 120.02918 * 180.02562 * 14 12 11 16 16 C 1.41354 * 107.14405 * 180.28451 * 3 2 1 17 17 N 1.30431 * 108.01136 * 359.55281 * 16 3 2 18 18 N 1.34229 * 126.29740 * 180.02562 * 2 1 3 19 19 C 1.46507 * 125.74130 * 359.95993 * 18 2 1 20 20 C 1.50702 * 109.46706 * 90.00123 * 19 18 2 21 21 H 1.07997 * 120.00824 * 359.97438 * 20 19 18 22 22 C 1.37879 * 119.99741 * 180.02562 * 20 19 18 23 23 N 1.31519 * 119.99940 * 359.97438 * 22 20 19 24 24 Si 1.86799 * 120.00109 * 180.02562 * 22 20 19 25 25 H 1.48492 * 109.47609 * 59.99480 * 24 22 20 26 26 H 1.48502 * 109.46992 * 179.97438 * 24 22 20 27 27 H 1.48498 * 109.46837 * 299.99171 * 24 22 20 28 28 H 1.09000 * 109.47076 * 89.97685 * 1 2 3 29 29 H 1.08999 * 109.47572 * 209.97642 * 1 2 3 30 30 H 1.09002 * 109.47288 * 329.97679 * 1 2 3 31 31 H 1.07992 * 120.02878 * 0.02562 * 8 7 6 32 32 H 1.09002 * 109.47439 * 270.23396 * 10 9 8 33 33 H 1.09008 * 109.46931 * 30.22865 * 10 9 8 34 34 H 1.08998 * 109.47226 * 150.22544 * 10 9 8 35 35 H 1.07999 * 119.94838 * 179.77429 * 11 9 8 36 36 H 1.08996 * 109.47211 * 270.02079 * 13 12 11 37 37 H 1.08998 * 109.46786 * 30.02398 * 13 12 11 38 38 H 1.09006 * 109.46640 * 150.02472 * 13 12 11 39 39 H 1.09000 * 109.47104 * 269.97875 * 15 14 12 40 40 H 1.08994 * 109.47035 * 29.98339 * 15 14 12 41 41 H 1.08998 * 109.46920 * 149.98051 * 15 14 12 42 42 H 1.07996 * 125.98883 * 179.71720 * 16 3 2 43 43 H 1.08997 * 109.47009 * 209.99387 * 19 18 2 44 44 H 1.08998 * 109.47141 * 329.99952 * 19 18 2 45 45 H 0.96998 * 120.00027 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3246 1.1133 0.0000 4 6 1.8873 2.5196 0.0005 5 8 0.7018 2.7873 -0.0040 6 8 2.8018 3.5097 -0.0001 7 6 2.3334 4.7822 -0.0941 8 6 2.1088 5.5267 1.0550 9 6 1.6373 6.8212 0.9563 10 6 1.3989 7.6328 2.2036 11 6 1.3792 7.3717 -0.2857 12 6 1.5973 6.6301 -1.4319 13 6 1.3145 7.2329 -2.7839 14 6 2.0734 5.3365 -1.3389 15 6 2.3114 4.5288 -2.5888 16 6 3.6599 0.6495 -0.0067 17 7 3.6340 -0.6545 -0.0008 18 7 2.3016 -1.0818 -0.0005 19 6 1.8498 -2.4755 -0.0003 20 6 1.6941 -2.9532 -1.4211 21 1 1.9097 -2.2855 -2.2421 22 6 1.2754 -4.2426 -1.6729 23 7 1.0124 -5.0556 -0.6731 24 14 1.0832 -4.8350 -3.4339 25 1 2.3891 -4.7388 -4.1341 26 1 0.6251 -6.2476 -3.4337 27 1 0.0827 -3.9900 -4.1340 28 1 -0.3633 0.0004 -1.0277 29 1 -0.3634 -0.8902 0.5134 30 1 -0.3634 0.8898 0.5142 31 1 2.3063 5.0959 2.0253 32 1 0.3769 7.4767 2.5489 33 1 2.0966 7.3189 2.9801 34 1 1.5509 8.6895 1.9841 35 1 1.0072 8.3828 -0.3606 36 1 0.2819 7.0261 -3.0651 37 1 1.4704 8.3108 -2.7408 38 1 1.9866 6.7977 -3.5235 39 1 1.4044 3.9820 -2.8463 40 1 2.5779 5.1968 -3.4077 41 1 3.1243 3.8234 -2.4161 42 1 4.5461 1.2668 -0.0128 43 1 2.5847 -3.0956 0.5130 44 1 0.8914 -2.5467 0.5141 45 1 0.7183 -5.9628 -0.8502 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000887759630.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:10:00 Heat of formation + Delta-G solvation = 0.862185 kcal Electronic energy + Delta-G solvation = -27324.330906 eV Core-core repulsion = 23501.108000 eV Total energy + Delta-G solvation = -3823.222906 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.28398 -40.58740 -38.94771 -36.47140 -34.48844 -33.96830 -32.22205 -31.69663 -31.15413 -29.48268 -27.82529 -27.29735 -26.80164 -25.03620 -24.02558 -23.08300 -21.61481 -20.54743 -20.07875 -19.00911 -17.52577 -16.93140 -16.85727 -16.75895 -15.78338 -15.29839 -14.97709 -14.59718 -14.44212 -14.16040 -14.05492 -13.63027 -13.56144 -13.25778 -13.07066 -12.97907 -12.91942 -12.75417 -12.53784 -12.36888 -12.18949 -12.03213 -11.88553 -11.59177 -11.54369 -11.44858 -11.32813 -11.18117 -10.90984 -10.58430 -10.49504 -10.36279 -10.01430 -9.90664 -8.74844 -8.71748 -8.69861 -8.50324 -8.13783 -6.37919 -4.46286 1.01452 1.18027 1.83368 2.64956 2.84690 3.17440 3.21788 3.23725 3.34019 3.58570 3.68097 4.20711 4.54966 4.60770 4.76063 4.89718 4.95271 4.98161 5.09573 5.10308 5.26196 5.30427 5.34827 5.38787 5.40184 5.53306 5.55354 5.60674 5.64331 5.71470 5.76879 5.85091 5.99145 6.01363 6.14311 6.22087 6.32111 6.33719 6.40353 6.45504 6.62256 6.71554 6.83982 6.96413 7.07937 7.48272 7.67261 7.71529 8.17972 8.30825 8.58471 9.20884 10.70320 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.020396 B = 0.002674 C = 0.002531 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1372.515277 B =10469.943837 C =11058.638950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C 0.175 3.825 3 C -0.318 4.318 4 C 0.549 3.451 5 O -0.511 6.511 6 O -0.294 6.294 7 C 0.102 3.898 8 C -0.122 4.122 9 C -0.079 4.079 10 C -0.112 4.112 11 C -0.118 4.118 12 C -0.074 4.074 13 C -0.116 4.116 14 C -0.090 4.090 15 C -0.121 4.121 16 C 0.081 3.919 17 N -0.295 5.295 18 N -0.309 5.309 19 C 0.250 3.750 20 C -0.543 4.543 21 H 0.065 0.935 22 C 0.069 3.931 23 N -0.889 5.889 24 Si 0.909 3.091 25 H -0.273 1.273 26 H -0.283 1.283 27 H -0.273 1.273 28 H 0.087 0.913 29 H 0.078 0.922 30 H 0.092 0.908 31 H 0.128 0.872 32 H 0.071 0.929 33 H 0.067 0.933 34 H 0.067 0.933 35 H 0.124 0.876 36 H 0.072 0.928 37 H 0.066 0.934 38 H 0.072 0.928 39 H 0.073 0.927 40 H 0.073 0.927 41 H 0.072 0.928 42 H 0.186 0.814 43 H 0.060 0.940 44 H 0.058 0.942 45 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.279 23.108 1.249 23.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.037 3.963 3 C -0.331 4.331 4 C 0.397 3.603 5 O -0.399 6.399 6 O -0.210 6.210 7 C 0.061 3.939 8 C -0.140 4.140 9 C -0.079 4.079 10 C -0.168 4.168 11 C -0.136 4.136 12 C -0.075 4.075 13 C -0.172 4.172 14 C -0.091 4.091 15 C -0.177 4.177 16 C -0.107 4.107 17 N -0.114 5.114 18 N -0.085 5.085 19 C 0.134 3.866 20 C -0.581 4.581 21 H 0.084 0.916 22 C -0.136 4.136 23 N -0.526 5.526 24 Si 0.735 3.265 25 H -0.198 1.198 26 H -0.208 1.208 27 H -0.198 1.198 28 H 0.106 0.894 29 H 0.097 0.903 30 H 0.111 0.889 31 H 0.146 0.854 32 H 0.090 0.910 33 H 0.086 0.914 34 H 0.085 0.915 35 H 0.142 0.858 36 H 0.091 0.909 37 H 0.085 0.915 38 H 0.091 0.909 39 H 0.092 0.908 40 H 0.092 0.908 41 H 0.091 0.909 42 H 0.203 0.797 43 H 0.078 0.922 44 H 0.076 0.924 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 0.547 21.709 1.322 21.756 hybrid contribution -0.509 0.261 -0.841 1.017 sum 0.038 21.971 0.480 21.976 Atomic orbital electron populations 1.20633 0.86507 1.04088 1.04249 1.21439 0.94971 0.86379 0.93540 1.18736 0.93910 0.88740 1.31748 1.20388 0.83376 0.84534 0.71958 1.90789 1.17566 1.83983 1.47608 1.84613 1.38827 1.12958 1.84617 1.18249 0.99764 0.83259 0.92651 1.21078 1.00406 0.94655 0.97859 1.19682 0.98879 0.93962 0.95391 1.20773 1.02373 0.99033 0.94652 1.20903 1.01423 0.99956 0.91332 1.19589 0.98921 0.93067 0.95883 1.20852 1.02384 1.00513 0.93462 1.19909 0.99493 0.95065 0.94612 1.20837 1.02884 0.99634 0.94389 1.23944 0.96584 0.92162 0.97964 1.77230 0.98218 1.12265 1.23673 1.49451 1.02608 1.08319 1.48140 1.19921 0.96551 0.70548 0.99614 1.21194 1.47792 0.98254 0.90864 0.91637 1.24921 0.94345 0.95937 0.98372 1.69900 1.44229 1.07253 1.31225 0.86365 0.78923 0.77787 0.83381 1.19844 1.20827 1.19825 0.89437 0.90345 0.88890 0.85400 0.91019 0.91414 0.91450 0.85806 0.90922 0.91507 0.90949 0.90809 0.90796 0.90890 0.79737 0.92241 0.92415 0.91977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.69 9.56 36.00 0.34 -1.34 16 2 C 0.18 3.51 7.01 -81.59 -0.57 2.94 16 3 C -0.32 -5.97 6.13 -105.08 -0.64 -6.62 16 4 C 0.55 9.75 7.68 34.40 0.26 10.01 16 5 O -0.51 -9.80 14.62 -19.29 -0.28 -10.09 16 6 O -0.29 -4.70 8.96 -24.96 -0.22 -4.92 16 7 C 0.10 1.51 4.91 -39.21 -0.19 1.31 16 8 C -0.12 -1.58 9.64 -39.43 -0.38 -1.96 16 9 C -0.08 -0.86 5.88 -104.64 -0.62 -1.48 16 10 C -0.11 -0.86 10.01 36.01 0.36 -0.50 16 11 C -0.12 -1.22 9.35 -39.56 -0.37 -1.59 16 12 C -0.07 -0.83 5.88 -104.64 -0.62 -1.45 16 13 C -0.12 -0.94 9.60 36.01 0.35 -0.60 16 14 C -0.09 -1.20 5.89 -104.47 -0.62 -1.82 16 15 C -0.12 -1.47 9.20 36.01 0.33 -1.14 16 16 C 0.08 1.47 11.87 -16.96 -0.20 1.27 16 17 N -0.29 -6.34 12.50 30.87 0.39 -5.96 16 18 N -0.31 -6.89 3.56 -57.76 -0.21 -7.10 16 19 C 0.25 6.11 5.97 -5.19 -0.03 6.08 16 20 C -0.54 -14.36 9.39 -34.44 -0.32 -14.69 16 21 H 0.07 1.78 7.81 -52.49 -0.41 1.37 16 22 C 0.07 1.81 5.46 -17.82 -0.10 1.71 16 23 N -0.89 -24.22 13.29 55.43 0.74 -23.48 16 24 Si 0.91 20.52 29.54 -169.99 -5.02 15.50 16 25 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 26 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 27 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 28 H 0.09 1.50 8.14 -51.93 -0.42 1.07 16 29 H 0.08 1.32 7.05 -51.93 -0.37 0.96 16 30 H 0.09 1.54 6.51 -51.93 -0.34 1.20 16 31 H 0.13 1.53 8.06 -52.49 -0.42 1.11 16 32 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.07 0.48 8.09 -51.92 -0.42 0.06 16 34 H 0.07 0.41 8.08 -51.93 -0.42 -0.01 16 35 H 0.12 0.96 8.06 -52.49 -0.42 0.53 16 36 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.07 0.43 8.08 -51.93 -0.42 0.01 16 38 H 0.07 0.54 5.95 -51.93 -0.31 0.24 16 39 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 40 H 0.07 0.70 5.95 -51.93 -0.31 0.40 16 41 H 0.07 0.94 7.53 -51.93 -0.39 0.55 16 42 H 0.19 2.65 8.06 -52.49 -0.42 2.22 16 43 H 0.06 1.54 8.14 -51.93 -0.42 1.12 16 44 H 0.06 1.39 7.01 -51.93 -0.36 1.02 16 45 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 LS Contribution 382.46 15.07 5.76 5.76 Total: -1.00 -30.09 382.46 -8.12 -38.21 By element: Atomic # 1 Polarization: 8.20 SS G_CDS: -6.26 Total: 1.93 kcal Atomic # 6 Polarization: -6.85 SS G_CDS: -3.01 Total: -9.86 kcal Atomic # 7 Polarization: -37.46 SS G_CDS: 0.92 Total: -36.54 kcal Atomic # 8 Polarization: -14.50 SS G_CDS: -0.51 Total: -15.01 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -5.02 Total: 15.50 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -30.09 -8.12 -38.21 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000887759630.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.073 kcal (2) G-P(sol) polarization free energy of solvation -30.090 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.984 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.211 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.862 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds