Wall clock time and date at job start Tue Mar 31 2020 15:09:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38129 * 126.29708 * 2 1 4 4 C 1.47275 * 126.42804 * 0.02562 * 3 2 1 5 5 O 1.21533 * 119.99945 * 359.72736 * 4 3 2 6 6 O 1.34783 * 120.00055 * 180.02562 * 4 3 2 7 7 C 1.35915 * 117.00075 * 175.51943 * 6 4 3 8 8 C 1.38753 * 120.05587 * 94.20965 * 7 6 4 9 9 C 1.38122 * 119.93633 * 179.77089 * 8 7 6 10 10 C 1.50704 * 119.97079 * 180.27432 * 9 8 7 11 11 C 1.38286 * 120.06146 * 0.50740 * 9 8 7 12 12 C 1.38249 * 120.11034 * 359.74337 * 11 9 8 13 13 C 1.50704 * 119.97115 * 179.97438 * 12 11 9 14 14 C 1.38159 * 120.05626 * 0.02562 * 12 11 9 15 15 C 1.50701 * 120.02918 * 180.02562 * 14 12 11 16 16 C 1.41354 * 107.14405 * 180.28451 * 3 2 1 17 17 N 1.30431 * 108.01136 * 359.55281 * 16 3 2 18 18 N 1.34229 * 126.29740 * 180.02562 * 2 1 3 19 19 C 1.46507 * 125.74130 * 359.95993 * 18 2 1 20 20 C 1.50702 * 109.46706 * 90.00123 * 19 18 2 21 21 H 1.07997 * 120.00824 * 359.97438 * 20 19 18 22 22 C 1.37879 * 119.99741 * 180.02562 * 20 19 18 23 23 N 1.31519 * 119.99940 * 359.97438 * 22 20 19 24 24 Si 1.86799 * 120.00109 * 180.02562 * 22 20 19 25 25 H 1.48492 * 109.47609 * 59.99480 * 24 22 20 26 26 H 1.48502 * 109.46992 * 179.97438 * 24 22 20 27 27 H 1.48498 * 109.46837 * 299.99171 * 24 22 20 28 28 H 1.09000 * 109.47076 * 89.97685 * 1 2 3 29 29 H 1.08999 * 109.47572 * 209.97642 * 1 2 3 30 30 H 1.09002 * 109.47288 * 329.97679 * 1 2 3 31 31 H 1.07992 * 120.02878 * 0.02562 * 8 7 6 32 32 H 1.09002 * 109.47439 * 270.23396 * 10 9 8 33 33 H 1.09008 * 109.46931 * 30.22865 * 10 9 8 34 34 H 1.08998 * 109.47226 * 150.22544 * 10 9 8 35 35 H 1.07999 * 119.94838 * 179.77429 * 11 9 8 36 36 H 1.08996 * 109.47211 * 270.02079 * 13 12 11 37 37 H 1.08998 * 109.46786 * 30.02398 * 13 12 11 38 38 H 1.09006 * 109.46640 * 150.02472 * 13 12 11 39 39 H 1.09000 * 109.47104 * 269.97875 * 15 14 12 40 40 H 1.08994 * 109.47035 * 29.98339 * 15 14 12 41 41 H 1.08998 * 109.46920 * 149.98051 * 15 14 12 42 42 H 1.07996 * 125.98883 * 179.71720 * 16 3 2 43 43 H 1.08997 * 109.47009 * 209.99387 * 19 18 2 44 44 H 1.08998 * 109.47141 * 329.99952 * 19 18 2 45 45 H 0.96998 * 120.00027 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3246 1.1133 0.0000 4 6 1.8873 2.5196 0.0005 5 8 0.7018 2.7873 -0.0040 6 8 2.8018 3.5097 -0.0001 7 6 2.3334 4.7822 -0.0941 8 6 2.1088 5.5267 1.0550 9 6 1.6373 6.8212 0.9563 10 6 1.3989 7.6328 2.2036 11 6 1.3792 7.3717 -0.2857 12 6 1.5973 6.6301 -1.4319 13 6 1.3145 7.2329 -2.7839 14 6 2.0734 5.3365 -1.3389 15 6 2.3114 4.5288 -2.5888 16 6 3.6599 0.6495 -0.0067 17 7 3.6340 -0.6545 -0.0008 18 7 2.3016 -1.0818 -0.0005 19 6 1.8498 -2.4755 -0.0003 20 6 1.6941 -2.9532 -1.4211 21 1 1.9097 -2.2855 -2.2421 22 6 1.2754 -4.2426 -1.6729 23 7 1.0124 -5.0556 -0.6731 24 14 1.0832 -4.8350 -3.4339 25 1 2.3891 -4.7388 -4.1341 26 1 0.6251 -6.2476 -3.4337 27 1 0.0827 -3.9900 -4.1340 28 1 -0.3633 0.0004 -1.0277 29 1 -0.3634 -0.8902 0.5134 30 1 -0.3634 0.8898 0.5142 31 1 2.3063 5.0959 2.0253 32 1 0.3769 7.4767 2.5489 33 1 2.0966 7.3189 2.9801 34 1 1.5509 8.6895 1.9841 35 1 1.0072 8.3828 -0.3606 36 1 0.2819 7.0261 -3.0651 37 1 1.4704 8.3108 -2.7408 38 1 1.9866 6.7977 -3.5235 39 1 1.4044 3.9820 -2.8463 40 1 2.5779 5.1968 -3.4077 41 1 3.1243 3.8234 -2.4161 42 1 4.5461 1.2668 -0.0128 43 1 2.5847 -3.0956 0.5130 44 1 0.8914 -2.5467 0.5141 45 1 0.7183 -5.9628 -0.8502 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000887759630.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:09:59 Heat of formation + Delta-G solvation = -12.810698 kcal Electronic energy + Delta-G solvation = -27324.923806 eV Core-core repulsion = 23501.108000 eV Total energy + Delta-G solvation = -3823.815807 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.65708 -41.94079 -40.00692 -37.78182 -35.86213 -35.29786 -33.96351 -33.01130 -32.38732 -30.31831 -29.46175 -28.44709 -28.05585 -26.03743 -25.53411 -24.60701 -22.90271 -21.61810 -21.20321 -20.58840 -18.98694 -18.77453 -18.10804 -17.92901 -16.97547 -16.66242 -16.48004 -16.21324 -15.60705 -15.52478 -15.14300 -14.93826 -14.43471 -14.35678 -14.23715 -14.15015 -13.84213 -13.82826 -13.77362 -13.65705 -13.63863 -13.26047 -13.19395 -13.03249 -12.76974 -12.70483 -12.43428 -12.34088 -12.32200 -12.17994 -11.91365 -11.90579 -11.57158 -11.41045 -10.76903 -10.38236 -9.74260 -9.63221 -9.39966 -8.39492 -6.55821 0.03448 0.29312 0.33213 1.11042 1.37693 1.39069 1.42985 1.50443 1.92085 2.13127 2.31824 2.69744 2.93447 3.59787 3.62902 3.77159 3.78123 3.86952 3.98261 4.07937 4.13665 4.29642 4.33987 4.51720 4.56093 4.59401 4.63291 4.67031 4.73089 4.78429 4.82972 4.84710 4.89042 4.89878 4.98789 5.05641 5.08693 5.14009 5.30804 5.37390 5.42075 5.46777 5.52739 5.56144 5.59608 5.71627 5.91051 6.00057 6.51519 6.67231 6.89476 7.15321 8.68505 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.020396 B = 0.002674 C = 0.002531 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1372.515277 B =10469.943837 C =11058.638950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C 0.166 3.834 3 C -0.320 4.320 4 C 0.556 3.444 5 O -0.528 6.528 6 O -0.290 6.290 7 C 0.065 3.935 8 C -0.139 4.139 9 C -0.080 4.080 10 C -0.110 4.110 11 C -0.115 4.115 12 C -0.078 4.078 13 C -0.115 4.115 14 C -0.110 4.110 15 C -0.118 4.118 16 C 0.098 3.902 17 N -0.330 5.330 18 N -0.331 5.331 19 C 0.266 3.734 20 C -0.558 4.558 21 H 0.053 0.947 22 C 0.026 3.974 23 N -0.915 5.915 24 Si 0.970 3.030 25 H -0.274 1.274 26 H -0.273 1.273 27 H -0.266 1.266 28 H 0.090 0.910 29 H 0.080 0.920 30 H 0.102 0.898 31 H 0.129 0.871 32 H 0.077 0.923 33 H 0.071 0.929 34 H 0.088 0.912 35 H 0.157 0.843 36 H 0.077 0.923 37 H 0.089 0.911 38 H 0.077 0.923 39 H 0.060 0.940 40 H 0.099 0.901 41 H 0.059 0.941 42 H 0.223 0.777 43 H 0.035 0.965 44 H 0.057 0.943 45 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.119 25.876 0.328 25.879 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.029 3.971 3 C -0.334 4.334 4 C 0.404 3.596 5 O -0.417 6.417 6 O -0.205 6.205 7 C 0.024 3.976 8 C -0.157 4.157 9 C -0.081 4.081 10 C -0.167 4.167 11 C -0.133 4.133 12 C -0.078 4.078 13 C -0.171 4.171 14 C -0.111 4.111 15 C -0.175 4.175 16 C -0.089 4.089 17 N -0.149 5.149 18 N -0.107 5.107 19 C 0.147 3.853 20 C -0.596 4.596 21 H 0.072 0.928 22 C -0.176 4.176 23 N -0.553 5.553 24 Si 0.794 3.206 25 H -0.199 1.199 26 H -0.198 1.198 27 H -0.190 1.190 28 H 0.109 0.891 29 H 0.099 0.901 30 H 0.120 0.880 31 H 0.147 0.853 32 H 0.096 0.904 33 H 0.090 0.910 34 H 0.107 0.893 35 H 0.174 0.826 36 H 0.096 0.904 37 H 0.107 0.893 38 H 0.095 0.905 39 H 0.079 0.921 40 H 0.118 0.882 41 H 0.078 0.922 42 H 0.239 0.761 43 H 0.053 0.947 44 H 0.074 0.926 45 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 0.158 24.502 0.410 24.506 hybrid contribution -0.363 -0.392 -0.506 0.736 sum -0.204 24.111 -0.097 24.112 Atomic orbital electron populations 1.20661 0.85085 1.04604 1.04561 1.21909 0.96051 0.86203 0.92983 1.18916 0.94058 0.89263 1.31134 1.20177 0.83328 0.84577 0.71481 1.90765 1.18305 1.84335 1.48344 1.84591 1.38183 1.13575 1.84156 1.18640 1.02317 0.82586 0.94071 1.21270 1.01215 0.95801 0.97449 1.20094 0.97511 0.93322 0.97129 1.20842 1.02812 0.99730 0.93282 1.21350 1.00056 1.01203 0.90699 1.20011 0.97734 0.92290 0.97814 1.20925 1.02713 1.01749 0.91711 1.20144 1.00334 0.96312 0.94273 1.20822 1.01728 0.99767 0.95133 1.24532 0.97655 0.91329 0.95414 1.77187 0.98173 1.13931 1.25645 1.49213 1.03325 1.07931 1.50201 1.19489 0.95645 0.71709 0.98415 1.21351 1.48224 0.98602 0.91446 0.92849 1.25706 0.93753 0.95880 1.02235 1.69981 1.44599 1.07643 1.33081 0.85416 0.78835 0.77716 0.78648 1.19906 1.19789 1.19032 0.89118 0.90092 0.87975 0.85349 0.90409 0.90979 0.89286 0.82583 0.90435 0.89261 0.90471 0.92122 0.88217 0.92220 0.76094 0.94660 0.92572 0.91585 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -3.23 9.56 71.23 0.68 -2.55 16 2 C 0.17 6.76 7.01 42.16 0.30 7.05 16 3 C -0.32 -12.10 6.13 -20.16 -0.12 -12.23 16 4 C 0.56 19.80 7.68 70.20 0.54 20.34 16 5 O -0.53 -20.33 14.62 19.73 0.29 -20.04 16 6 O -0.29 -9.27 8.96 -0.56 -0.01 -9.27 16 7 C 0.06 1.89 4.91 22.51 0.11 2.00 16 8 C -0.14 -3.53 9.64 22.37 0.22 -3.31 16 9 C -0.08 -1.58 5.88 -19.88 -0.12 -1.70 16 10 C -0.11 -1.40 10.01 71.24 0.71 -0.68 16 11 C -0.12 -2.04 9.35 22.28 0.21 -1.83 16 12 C -0.08 -1.58 5.88 -19.88 -0.12 -1.69 16 13 C -0.11 -1.52 9.60 71.24 0.68 -0.83 16 14 C -0.11 -2.84 5.89 -19.77 -0.12 -2.96 16 15 C -0.12 -2.81 9.20 71.24 0.66 -2.16 16 16 C 0.10 3.55 11.87 85.67 1.02 4.56 16 17 N -0.33 -14.49 12.50 -56.24 -0.70 -15.19 16 18 N -0.33 -15.17 3.56 -336.64 -1.20 -16.36 16 19 C 0.27 13.44 5.97 85.63 0.51 13.95 16 20 C -0.56 -30.22 9.39 25.60 0.24 -29.97 16 21 H 0.05 2.96 7.81 -2.91 -0.02 2.94 16 22 C 0.03 1.38 5.46 84.65 0.46 1.85 16 23 N -0.92 -50.44 13.29 21.45 0.28 -50.16 16 24 Si 0.97 42.01 29.54 68.60 2.03 44.04 16 25 H -0.27 -11.82 7.11 99.48 0.71 -11.11 16 26 H -0.27 -11.32 7.11 99.48 0.71 -10.61 16 27 H -0.27 -11.12 7.11 99.48 0.71 -10.41 16 28 H 0.09 3.13 8.14 -2.39 -0.02 3.12 16 29 H 0.08 2.79 7.05 -2.39 -0.02 2.77 16 30 H 0.10 3.40 6.51 -2.39 -0.02 3.38 16 31 H 0.13 3.08 8.06 -2.91 -0.02 3.05 16 32 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 33 H 0.07 0.86 8.09 -2.38 -0.02 0.84 16 34 H 0.09 0.75 8.08 -2.39 -0.02 0.74 16 35 H 0.16 1.70 8.06 -2.91 -0.02 1.68 16 36 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 37 H 0.09 0.79 8.08 -2.39 -0.02 0.77 16 38 H 0.08 0.94 5.95 -2.38 -0.01 0.93 16 39 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 40 H 0.10 1.75 5.95 -2.39 -0.01 1.74 16 41 H 0.06 1.54 7.53 -2.39 -0.02 1.52 16 42 H 0.22 6.05 8.06 -2.91 -0.02 6.02 16 43 H 0.04 1.92 8.14 -2.39 -0.02 1.90 16 44 H 0.06 2.81 7.01 -2.39 -0.02 2.79 16 45 H 0.27 14.21 8.31 -92.71 -0.77 13.44 16 Total: -1.00 -65.80 382.46 7.56 -58.24 By element: Atomic # 1 Polarization: 17.91 SS G_CDS: 1.01 Total: 18.92 kcal Atomic # 6 Polarization: -16.02 SS G_CDS: 5.86 Total: -10.16 kcal Atomic # 7 Polarization: -80.10 SS G_CDS: -1.62 Total: -81.71 kcal Atomic # 8 Polarization: -29.60 SS G_CDS: 0.28 Total: -29.32 kcal Atomic # 14 Polarization: 42.01 SS G_CDS: 2.03 Total: 44.04 kcal Total: -65.80 7.56 -58.24 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000887759630.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.428 kcal (2) G-P(sol) polarization free energy of solvation -65.797 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.239 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds