Wall clock time and date at job start Tue Mar 31 2020 14:53:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38378 * 119.92780 * 2 1 4 4 C 1.38338 * 120.30527 * 180.02562 * 3 2 1 5 5 C 1.37972 * 120.14528 * 359.97438 * 4 3 2 6 6 C 1.50701 * 120.07431 * 179.97438 * 5 4 3 7 7 C 1.39586 * 119.85258 * 0.26388 * 5 4 3 8 8 C 1.47641 * 120.15301 * 179.72318 * 7 5 4 9 9 N 1.29086 * 125.86352 * 0.02562 * 8 7 5 10 10 O 1.41398 * 112.87591 * 179.64790 * 9 8 7 11 11 C 1.44207 * 107.59072 * 17.48860 * 10 9 8 12 12 H 1.08995 * 110.97405 * 92.71994 * 11 10 9 13 13 C 1.50703 * 110.97016 * 216.44966 * 11 10 9 14 14 O 1.21291 * 120.00162 * 3.54411 * 13 11 10 15 15 N 1.34778 * 119.99784 * 183.54969 * 13 11 10 16 16 C 1.37100 * 119.99552 * 179.97438 * 15 13 11 17 17 H 1.08007 * 119.99479 * 222.67571 * 16 15 13 18 18 C 1.38945 * 120.00240 * 42.67871 * 16 15 13 19 19 N 1.31410 * 119.99998 * 19.27605 * 18 16 15 20 20 Si 1.86800 * 119.99956 * 199.27529 * 18 16 15 21 21 H 1.48497 * 109.47175 * 359.97438 * 20 18 16 22 22 H 1.48498 * 109.47109 * 120.00292 * 20 18 16 23 23 H 1.48500 * 109.46938 * 239.99663 * 20 18 16 24 24 C 1.46497 * 120.00118 * 0.02562 * 15 13 11 25 25 C 1.52999 * 117.49851 * 191.77734 * 24 15 13 26 26 C 1.52997 * 60.00029 * 252.50736 * 25 24 15 27 27 C 1.51693 * 125.87199 * 179.70763 * 8 7 5 28 28 C 1.37941 * 119.92679 * 179.97438 * 2 1 3 29 29 H 1.08994 * 109.47108 * 90.00075 * 1 2 3 30 30 H 1.09003 * 109.47089 * 209.99865 * 1 2 3 31 31 H 1.08995 * 109.47124 * 329.99614 * 1 2 3 32 32 H 1.08000 * 119.84467 * 359.97438 * 3 2 1 33 33 H 1.08000 * 119.92467 * 179.97438 * 4 3 2 34 34 H 1.09000 * 109.46819 * 90.00530 * 6 5 4 35 35 H 1.08993 * 109.47851 * 210.00391 * 6 5 4 36 36 H 1.09004 * 109.47169 * 330.00813 * 6 5 4 37 37 H 0.96999 * 120.00282 * 174.87571 * 19 18 16 38 38 H 1.09004 * 115.54970 * 337.48619 * 24 15 13 39 39 H 1.08998 * 117.49591 * 0.02562 * 25 24 15 40 40 H 1.09006 * 117.49721 * 145.01257 * 25 24 15 41 41 H 1.08996 * 117.49559 * 252.50935 * 26 25 24 42 42 H 1.09000 * 117.49673 * 107.48723 * 26 25 24 43 43 H 1.08997 * 110.79492 * 282.91305 * 27 8 7 44 44 H 1.08998 * 110.78598 * 46.37954 * 27 8 7 45 45 H 1.08007 * 120.07087 * 359.97438 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1974 1.1993 0.0000 4 6 3.5807 1.2084 -0.0005 5 6 4.2815 0.0198 -0.0005 6 6 5.7884 0.0316 -0.0017 7 6 3.5915 -1.1935 -0.0056 8 6 4.3346 -2.4693 -0.0118 9 7 5.6192 -2.5961 -0.0127 10 8 6.0382 -3.9466 -0.0112 11 6 4.9148 -4.7519 -0.4222 12 1 4.9287 -4.9204 -1.4989 13 6 4.8867 -6.0602 0.3253 14 8 5.7061 -6.2812 1.1918 15 7 3.9511 -6.9845 0.0310 16 6 3.9260 -8.1749 0.7107 17 1 3.7599 -9.0986 0.1761 18 6 4.1140 -8.1930 2.0872 19 7 3.9393 -7.0957 2.7888 20 14 4.6152 -9.7773 2.9407 21 1 4.7454 -10.8617 1.9346 22 1 5.9169 -9.5793 3.6272 23 1 3.5809 -10.1504 3.9388 24 6 2.9618 -6.7178 -1.0161 25 6 1.7683 -7.6695 -1.1192 26 6 2.8744 -7.7124 -2.1754 27 6 3.7200 -3.8561 -0.0114 28 6 2.1952 -1.1955 0.0005 29 1 -0.3633 0.0000 -1.0276 30 1 -0.3633 -0.8900 0.5138 31 1 -0.3633 0.8899 0.5139 32 1 1.6537 2.1324 -0.0004 33 1 4.1133 2.1479 -0.0009 34 1 6.1525 0.0349 1.0257 35 1 6.1584 -0.8556 -0.5154 36 1 6.1444 0.9243 -0.5161 37 1 3.9975 -7.1243 3.7566 38 1 2.7879 -5.6656 -1.2415 39 1 1.7190 -8.4938 -0.4078 40 1 0.8087 -7.2435 -1.4123 41 1 2.6425 -7.3146 -3.1633 42 1 3.5530 -8.5652 -2.1591 43 1 3.3600 -4.1195 0.9831 44 1 2.9168 -3.9234 -0.7452 45 1 1.6551 -2.1308 0.0014 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000888556382.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:53:43 Heat of formation + Delta-G solvation = 57.211958 kcal Electronic energy + Delta-G solvation = -28188.281330 eV Core-core repulsion = 24367.501934 eV Total energy + Delta-G solvation = -3820.779396 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.35969 -39.30495 -38.09316 -36.05658 -34.40439 -33.01134 -32.76697 -31.39691 -30.30345 -30.11588 -29.21316 -25.46521 -25.06075 -23.62560 -23.39747 -21.74919 -21.40622 -21.01711 -19.94269 -18.90584 -17.04797 -16.42397 -16.18064 -16.04533 -15.72535 -15.00007 -14.90828 -14.62142 -14.30582 -14.17568 -13.70508 -13.64298 -13.38113 -13.24731 -13.05730 -12.82642 -12.63291 -12.54560 -12.36542 -12.03267 -11.78741 -11.61960 -11.44872 -11.38875 -11.20367 -11.09752 -10.95089 -10.87675 -10.64416 -10.20974 -10.15939 -10.04444 -9.84064 -9.68092 -8.81225 -8.72602 -8.39959 -8.04183 -7.11618 -6.18922 -3.93510 0.71325 1.22761 2.33827 3.23517 3.27340 3.37587 3.40229 3.65855 3.85177 4.15861 4.26834 4.49826 4.65898 4.66230 4.76350 4.88103 4.92482 4.98020 5.05405 5.17514 5.20530 5.33244 5.40014 5.43068 5.44899 5.53613 5.59943 5.64847 5.66129 5.70146 5.78997 5.86923 5.90969 5.93850 5.97865 6.14155 6.16608 6.24666 6.32895 6.37685 6.44371 6.58143 6.65981 6.84349 6.87964 7.54844 7.64312 8.17938 8.93730 9.06048 9.54675 10.15456 10.90197 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.014730 B = 0.003548 C = 0.003309 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1900.408697 B = 7888.946643 C = 8460.765650 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.098 4.098 3 C -0.102 4.102 4 C -0.124 4.124 5 C -0.050 4.050 6 C -0.133 4.133 7 C -0.034 4.034 8 C 0.117 3.883 9 N -0.284 5.284 10 O -0.168 6.168 11 C 0.034 3.966 12 H 0.093 0.907 13 C 0.484 3.516 14 O -0.506 6.506 15 N -0.419 5.419 16 C -0.350 4.350 17 H 0.082 0.918 18 C 0.073 3.927 19 N -0.830 5.830 20 Si 0.913 3.087 21 H -0.270 1.270 22 H -0.280 1.280 23 H -0.285 1.285 24 C 0.064 3.936 25 C -0.173 4.173 26 C -0.205 4.205 27 C -0.132 4.132 28 C -0.082 4.082 29 H 0.070 0.930 30 H 0.069 0.931 31 H 0.066 0.934 32 H 0.124 0.876 33 H 0.126 0.874 34 H 0.074 0.926 35 H 0.101 0.899 36 H 0.062 0.938 37 H 0.265 0.735 38 H 0.104 0.896 39 H 0.109 0.891 40 H 0.084 0.916 41 H 0.084 0.916 42 H 0.093 0.907 43 H 0.115 0.885 44 H 0.100 0.900 45 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.346 14.718 -8.422 18.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.098 4.098 3 C -0.121 4.121 4 C -0.142 4.142 5 C -0.052 4.052 6 C -0.190 4.190 7 C -0.035 4.035 8 C -0.071 4.071 9 N -0.024 5.024 10 O -0.186 6.186 11 C -0.029 4.029 12 H 0.110 0.890 13 C 0.268 3.732 14 O -0.381 6.381 15 N -0.141 5.141 16 C -0.476 4.476 17 H 0.099 0.901 18 C -0.138 4.138 19 N -0.463 5.463 20 Si 0.740 3.260 21 H -0.195 1.195 22 H -0.205 1.205 23 H -0.211 1.211 24 C -0.042 4.042 25 C -0.210 4.210 26 C -0.244 4.244 27 C -0.172 4.172 28 C -0.102 4.102 29 H 0.089 0.911 30 H 0.088 0.912 31 H 0.085 0.915 32 H 0.142 0.858 33 H 0.144 0.856 34 H 0.093 0.907 35 H 0.119 0.881 36 H 0.081 0.919 37 H 0.075 0.925 38 H 0.121 0.879 39 H 0.127 0.873 40 H 0.102 0.898 41 H 0.103 0.897 42 H 0.112 0.888 43 H 0.133 0.867 44 H 0.118 0.882 45 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -6.594 15.061 -7.689 18.150 hybrid contribution -0.729 -1.177 0.407 1.443 sum -7.322 13.884 -7.282 17.303 Atomic orbital electron populations 1.20781 0.90778 1.03015 1.02403 1.19783 0.96278 0.92688 1.01048 1.21152 0.94120 0.97553 0.99235 1.20960 0.94030 0.97388 1.01786 1.20139 0.96809 0.91779 0.96475 1.21239 0.90245 1.04138 1.03336 1.17749 0.92330 0.88724 1.04689 1.24236 0.92506 0.94653 0.95724 1.78298 1.13040 0.98900 1.12169 1.91335 1.30556 1.09449 1.87309 1.23692 0.85648 0.93843 0.99722 0.88960 1.19198 0.83464 0.84395 0.86097 1.90589 1.38898 1.77463 1.31146 1.42644 1.23212 1.16002 1.32262 1.18906 1.55324 0.83981 0.89401 0.90058 1.25232 0.94660 0.97179 0.96703 1.69811 1.41892 1.27987 1.06567 0.86130 0.78578 0.82027 0.79221 1.19485 1.20541 1.21129 1.21848 0.94840 0.94424 0.93130 1.23086 0.92178 1.03788 1.01996 1.23295 1.03491 1.03889 0.93735 1.23016 0.99888 0.88439 1.05851 1.21147 0.92303 0.98426 0.98354 0.91121 0.91229 0.91530 0.85846 0.85585 0.90700 0.88096 0.91912 0.92455 0.87860 0.87315 0.89789 0.89727 0.88833 0.86686 0.88222 0.85101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.84 10.01 36.01 0.36 -0.48 16 2 C -0.10 -0.99 5.87 -104.68 -0.61 -1.60 16 3 C -0.10 -0.96 9.69 -39.49 -0.38 -1.34 16 4 C -0.12 -1.28 9.69 -39.64 -0.38 -1.67 16 5 C -0.05 -0.64 5.91 -104.22 -0.62 -1.26 16 6 C -0.13 -1.68 9.19 36.01 0.33 -1.35 16 7 C -0.03 -0.47 5.87 -105.04 -0.62 -1.09 16 8 C 0.12 1.97 7.05 -79.42 -0.56 1.41 16 9 N -0.28 -5.46 8.97 35.30 0.32 -5.14 16 10 O -0.17 -3.85 11.82 -30.21 -0.36 -4.21 16 11 C 0.03 0.70 3.23 -26.89 -0.09 0.61 16 12 H 0.09 1.69 7.89 -51.93 -0.41 1.28 16 13 C 0.48 12.50 6.30 -10.98 -0.07 12.43 16 14 O -0.51 -15.62 14.23 -13.29 -0.19 -15.81 16 15 N -0.42 -10.21 2.86 -107.73 -0.31 -10.52 16 16 C -0.35 -9.33 7.72 -14.93 -0.12 -9.45 16 17 H 0.08 2.09 7.55 -52.48 -0.40 1.70 16 18 C 0.07 2.04 4.35 -17.47 -0.08 1.96 16 19 N -0.83 -24.30 11.67 55.50 0.65 -23.65 16 20 Si 0.91 21.82 29.60 -169.99 -5.03 16.79 16 21 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 22 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 23 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 24 C 0.06 1.20 5.81 -67.93 -0.39 0.81 16 25 C -0.17 -2.93 9.82 -26.73 -0.26 -3.19 16 26 C -0.21 -3.35 10.19 -26.73 -0.27 -3.62 16 27 C -0.13 -2.31 4.93 -26.40 -0.13 -2.44 16 28 C -0.08 -0.98 9.26 -39.17 -0.36 -1.34 16 29 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 30 H 0.07 0.51 8.08 -51.93 -0.42 0.09 16 31 H 0.07 0.41 8.08 -51.93 -0.42 -0.01 16 32 H 0.12 0.85 8.06 -52.49 -0.42 0.42 16 33 H 0.13 1.02 8.06 -52.49 -0.42 0.59 16 34 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 35 H 0.10 1.50 5.17 -51.93 -0.27 1.23 16 36 H 0.06 0.63 8.09 -51.93 -0.42 0.21 16 37 H 0.27 7.48 8.32 -40.82 -0.34 7.14 16 38 H 0.10 1.68 4.96 -51.93 -0.26 1.42 16 39 H 0.11 2.08 6.97 -51.93 -0.36 1.72 16 40 H 0.08 1.18 8.14 -51.93 -0.42 0.75 16 41 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 42 H 0.09 1.67 8.14 -51.93 -0.42 1.24 16 43 H 0.12 2.30 7.91 -51.93 -0.41 1.89 16 44 H 0.10 1.37 6.50 -51.93 -0.34 1.03 16 45 H 0.13 1.40 7.37 -52.48 -0.39 1.02 16 LS Contribution 369.07 15.07 5.56 5.56 Total: -1.00 -34.30 369.07 -9.80 -44.10 By element: Atomic # 1 Polarization: 10.65 SS G_CDS: -6.18 Total: 4.47 kcal Atomic # 6 Polarization: -7.35 SS G_CDS: -4.25 Total: -11.60 kcal Atomic # 7 Polarization: -39.96 SS G_CDS: 0.66 Total: -39.31 kcal Atomic # 8 Polarization: -19.47 SS G_CDS: -0.55 Total: -20.01 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.03 Total: 16.79 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -34.30 -9.80 -44.10 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000888556382.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.312 kcal (2) G-P(sol) polarization free energy of solvation -34.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.008 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.796 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.100 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.212 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds