Wall clock time and date at job start Tue Mar 31 2020 14:53:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38378 * 119.92780 * 2 1 4 4 C 1.38338 * 120.30527 * 180.02562 * 3 2 1 5 5 C 1.37972 * 120.14528 * 359.97438 * 4 3 2 6 6 C 1.50701 * 120.07431 * 179.97438 * 5 4 3 7 7 C 1.39586 * 119.85258 * 0.26388 * 5 4 3 8 8 C 1.47641 * 120.15301 * 179.72318 * 7 5 4 9 9 N 1.29086 * 125.86352 * 0.02562 * 8 7 5 10 10 O 1.41398 * 112.87591 * 179.64790 * 9 8 7 11 11 C 1.44207 * 107.59072 * 17.48860 * 10 9 8 12 12 H 1.08995 * 110.97405 * 92.71994 * 11 10 9 13 13 C 1.50703 * 110.97016 * 216.44966 * 11 10 9 14 14 O 1.21291 * 120.00162 * 3.54411 * 13 11 10 15 15 N 1.34778 * 119.99784 * 183.54969 * 13 11 10 16 16 C 1.37100 * 119.99552 * 179.97438 * 15 13 11 17 17 H 1.08007 * 119.99479 * 222.67571 * 16 15 13 18 18 C 1.38945 * 120.00240 * 42.67871 * 16 15 13 19 19 N 1.31410 * 119.99998 * 19.27605 * 18 16 15 20 20 Si 1.86800 * 119.99956 * 199.27529 * 18 16 15 21 21 H 1.48497 * 109.47175 * 359.97438 * 20 18 16 22 22 H 1.48498 * 109.47109 * 120.00292 * 20 18 16 23 23 H 1.48500 * 109.46938 * 239.99663 * 20 18 16 24 24 C 1.46497 * 120.00118 * 0.02562 * 15 13 11 25 25 C 1.52999 * 117.49851 * 191.77734 * 24 15 13 26 26 C 1.52997 * 60.00029 * 252.50736 * 25 24 15 27 27 C 1.51693 * 125.87199 * 179.70763 * 8 7 5 28 28 C 1.37941 * 119.92679 * 179.97438 * 2 1 3 29 29 H 1.08994 * 109.47108 * 90.00075 * 1 2 3 30 30 H 1.09003 * 109.47089 * 209.99865 * 1 2 3 31 31 H 1.08995 * 109.47124 * 329.99614 * 1 2 3 32 32 H 1.08000 * 119.84467 * 359.97438 * 3 2 1 33 33 H 1.08000 * 119.92467 * 179.97438 * 4 3 2 34 34 H 1.09000 * 109.46819 * 90.00530 * 6 5 4 35 35 H 1.08993 * 109.47851 * 210.00391 * 6 5 4 36 36 H 1.09004 * 109.47169 * 330.00813 * 6 5 4 37 37 H 0.96999 * 120.00282 * 174.87571 * 19 18 16 38 38 H 1.09004 * 115.54970 * 337.48619 * 24 15 13 39 39 H 1.08998 * 117.49591 * 0.02562 * 25 24 15 40 40 H 1.09006 * 117.49721 * 145.01257 * 25 24 15 41 41 H 1.08996 * 117.49559 * 252.50935 * 26 25 24 42 42 H 1.09000 * 117.49673 * 107.48723 * 26 25 24 43 43 H 1.08997 * 110.79492 * 282.91305 * 27 8 7 44 44 H 1.08998 * 110.78598 * 46.37954 * 27 8 7 45 45 H 1.08007 * 120.07087 * 359.97438 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1974 1.1993 0.0000 4 6 3.5807 1.2084 -0.0005 5 6 4.2815 0.0198 -0.0005 6 6 5.7884 0.0316 -0.0017 7 6 3.5915 -1.1935 -0.0056 8 6 4.3346 -2.4693 -0.0118 9 7 5.6192 -2.5961 -0.0127 10 8 6.0382 -3.9466 -0.0112 11 6 4.9148 -4.7519 -0.4222 12 1 4.9287 -4.9204 -1.4989 13 6 4.8867 -6.0602 0.3253 14 8 5.7061 -6.2812 1.1918 15 7 3.9511 -6.9845 0.0310 16 6 3.9260 -8.1749 0.7107 17 1 3.7599 -9.0986 0.1761 18 6 4.1140 -8.1930 2.0872 19 7 3.9393 -7.0957 2.7888 20 14 4.6152 -9.7773 2.9407 21 1 4.7454 -10.8617 1.9346 22 1 5.9169 -9.5793 3.6272 23 1 3.5809 -10.1504 3.9388 24 6 2.9618 -6.7178 -1.0161 25 6 1.7683 -7.6695 -1.1192 26 6 2.8744 -7.7124 -2.1754 27 6 3.7200 -3.8561 -0.0114 28 6 2.1952 -1.1955 0.0005 29 1 -0.3633 0.0000 -1.0276 30 1 -0.3633 -0.8900 0.5138 31 1 -0.3633 0.8899 0.5139 32 1 1.6537 2.1324 -0.0004 33 1 4.1133 2.1479 -0.0009 34 1 6.1525 0.0349 1.0257 35 1 6.1584 -0.8556 -0.5154 36 1 6.1444 0.9243 -0.5161 37 1 3.9975 -7.1243 3.7566 38 1 2.7879 -5.6656 -1.2415 39 1 1.7190 -8.4938 -0.4078 40 1 0.8087 -7.2435 -1.4123 41 1 2.6425 -7.3146 -3.1633 42 1 3.5530 -8.5652 -2.1591 43 1 3.3600 -4.1195 0.9831 44 1 2.9168 -3.9234 -0.7452 45 1 1.6551 -2.1308 0.0014 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000888556382.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:53:42 Heat of formation + Delta-G solvation = 37.790532 kcal Electronic energy + Delta-G solvation = -28189.123506 eV Core-core repulsion = 24367.501934 eV Total energy + Delta-G solvation = -3821.621573 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.74592 -40.49544 -39.65572 -37.77435 -35.44048 -34.79959 -34.06818 -33.19628 -31.78551 -31.29182 -30.08624 -27.35092 -25.89754 -25.20906 -24.44557 -23.09299 -22.84507 -22.13963 -21.61401 -20.20632 -18.82080 -17.96409 -17.76819 -17.30798 -16.75298 -16.51544 -16.26348 -15.99264 -15.74720 -15.44854 -15.21213 -14.93083 -14.80260 -14.36983 -14.14698 -14.07532 -13.94901 -13.70263 -13.56096 -13.35980 -13.12440 -12.96768 -12.92107 -12.77146 -12.62388 -12.41553 -12.26993 -12.24108 -12.09032 -12.00431 -11.78814 -11.39385 -11.24865 -11.03261 -10.75134 -10.04452 -9.67378 -9.35549 -9.05679 -8.27459 -6.04245 -0.31971 0.39690 1.18798 1.31865 1.41446 1.48460 1.74000 2.03080 2.34186 2.77195 2.82932 3.00638 3.08548 3.30093 3.42378 3.44492 3.77978 3.86486 3.93303 3.98784 4.04973 4.11646 4.23088 4.29458 4.31010 4.41217 4.48083 4.52715 4.61853 4.74644 4.76800 4.83948 4.91168 4.91481 4.94852 5.02436 5.05351 5.26523 5.27916 5.38432 5.43504 5.44523 5.50451 5.60795 5.64929 6.01249 6.10974 6.23042 6.92092 7.10447 7.56122 8.20562 8.81231 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.014730 B = 0.003548 C = 0.003309 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1900.408697 B = 7888.946643 C = 8460.765650 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.099 4.099 3 C -0.090 4.090 4 C -0.123 4.123 5 C -0.064 4.064 6 C -0.132 4.132 7 C -0.066 4.066 8 C 0.139 3.861 9 N -0.304 5.304 10 O -0.221 6.221 11 C 0.039 3.961 12 H 0.119 0.881 13 C 0.468 3.532 14 O -0.576 6.576 15 N -0.427 5.427 16 C -0.356 4.356 17 H 0.086 0.914 18 C 0.022 3.978 19 N -0.866 5.866 20 Si 0.968 3.032 21 H -0.255 1.255 22 H -0.300 1.300 23 H -0.269 1.269 24 C 0.031 3.969 25 C -0.164 4.164 26 C -0.182 4.182 27 C -0.121 4.121 28 C -0.087 4.087 29 H 0.084 0.916 30 H 0.068 0.932 31 H 0.082 0.918 32 H 0.158 0.842 33 H 0.152 0.848 34 H 0.064 0.936 35 H 0.076 0.924 36 H 0.088 0.912 37 H 0.259 0.741 38 H 0.133 0.867 39 H 0.081 0.919 40 H 0.123 0.877 41 H 0.127 0.873 42 H 0.073 0.927 43 H 0.086 0.914 44 H 0.143 0.857 45 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.628 16.890 -10.655 23.109 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.099 4.099 3 C -0.109 4.109 4 C -0.141 4.141 5 C -0.066 4.066 6 C -0.188 4.188 7 C -0.067 4.067 8 C -0.049 4.049 9 N -0.049 5.049 10 O -0.235 6.235 11 C -0.023 4.023 12 H 0.137 0.863 13 C 0.254 3.746 14 O -0.456 6.456 15 N -0.148 5.148 16 C -0.483 4.483 17 H 0.103 0.897 18 C -0.185 4.185 19 N -0.501 5.501 20 Si 0.794 3.206 21 H -0.178 1.178 22 H -0.227 1.227 23 H -0.194 1.194 24 C -0.074 4.074 25 C -0.201 4.201 26 C -0.220 4.220 27 C -0.160 4.160 28 C -0.107 4.107 29 H 0.103 0.897 30 H 0.087 0.913 31 H 0.101 0.899 32 H 0.176 0.824 33 H 0.170 0.830 34 H 0.082 0.918 35 H 0.095 0.905 36 H 0.107 0.893 37 H 0.069 0.931 38 H 0.150 0.850 39 H 0.099 0.901 40 H 0.141 0.859 41 H 0.145 0.855 42 H 0.092 0.908 43 H 0.104 0.896 44 H 0.161 0.839 45 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -9.922 17.178 -9.976 22.204 hybrid contribution 0.155 -1.706 1.018 1.992 sum -9.767 15.472 -8.958 20.372 Atomic orbital electron populations 1.20849 0.88625 1.03875 1.03539 1.20158 0.97832 0.92165 0.99715 1.21611 0.93866 0.98770 0.96611 1.21270 0.94723 0.97335 1.00745 1.20286 0.96747 0.92448 0.97127 1.21181 0.90794 1.04177 1.02661 1.17869 0.93229 0.87646 1.07952 1.24714 0.91847 0.95610 0.92699 1.78450 1.14343 0.96221 1.15896 1.91297 1.32244 1.11713 1.88254 1.23569 0.86900 0.91787 1.00046 0.86317 1.20059 0.82690 0.86159 0.85656 1.90527 1.41510 1.79269 1.34301 1.42824 1.24038 1.15149 1.32757 1.19173 1.54209 0.85333 0.89602 0.89664 1.26047 0.94813 0.99851 0.97760 1.69924 1.43991 1.29980 1.06216 0.85279 0.77398 0.79288 0.78683 1.17801 1.22728 1.19411 1.22241 0.95170 0.96880 0.93102 1.23148 0.93525 1.02038 1.01426 1.23337 1.02049 1.01794 0.94866 1.22926 0.99734 0.88003 1.05352 1.21335 0.91369 0.99857 0.98148 0.89724 0.91285 0.89866 0.82410 0.82990 0.91768 0.90528 0.89287 0.93145 0.84954 0.90053 0.85851 0.85460 0.90800 0.89565 0.83874 0.84330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.19 10.01 71.24 0.71 -0.48 16 2 C -0.10 -1.62 5.87 -19.90 -0.12 -1.74 16 3 C -0.09 -1.31 9.69 22.33 0.22 -1.09 16 4 C -0.12 -2.14 9.69 22.23 0.22 -1.93 16 5 C -0.06 -1.55 5.91 -19.60 -0.12 -1.67 16 6 C -0.13 -3.31 9.19 71.24 0.65 -2.66 16 7 C -0.07 -1.78 5.87 -20.13 -0.12 -1.90 16 8 C 0.14 4.74 7.05 45.76 0.32 5.07 16 9 N -0.30 -12.26 8.97 -42.23 -0.38 -12.64 16 10 O -0.22 -10.75 11.82 -20.32 -0.24 -10.99 16 11 C 0.04 1.68 3.23 30.49 0.10 1.78 16 12 H 0.12 4.32 7.89 -2.39 -0.02 4.30 16 13 C 0.47 25.28 6.30 87.66 0.55 25.83 16 14 O -0.58 -37.96 14.23 14.95 0.21 -37.75 16 15 N -0.43 -21.24 2.86 -613.13 -1.76 -23.00 16 16 C -0.36 -19.52 7.72 84.04 0.65 -18.87 16 17 H 0.09 4.47 7.55 -2.91 -0.02 4.45 16 18 C 0.02 1.27 4.35 84.93 0.37 1.64 16 19 N -0.87 -53.35 11.67 21.66 0.25 -53.10 16 20 Si 0.97 46.35 29.60 68.60 2.03 48.38 16 21 H -0.25 -11.34 7.11 99.48 0.71 -10.64 16 22 H -0.30 -15.27 7.11 99.48 0.71 -14.56 16 23 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 24 C 0.03 1.10 5.81 44.99 0.26 1.37 16 25 C -0.16 -5.14 9.82 30.59 0.30 -4.84 16 26 C -0.18 -5.42 10.19 30.59 0.31 -5.11 16 27 C -0.12 -4.23 4.93 30.81 0.15 -4.08 16 28 C -0.09 -1.87 9.26 22.54 0.21 -1.66 16 29 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 30 H 0.07 0.77 8.08 -2.39 -0.02 0.75 16 31 H 0.08 0.63 8.08 -2.39 -0.02 0.62 16 32 H 0.16 1.24 8.06 -2.91 -0.02 1.21 16 33 H 0.15 1.82 8.06 -2.91 -0.02 1.79 16 34 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 35 H 0.08 2.35 5.17 -2.39 -0.01 2.34 16 36 H 0.09 1.68 8.09 -2.39 -0.02 1.66 16 37 H 0.26 15.47 8.32 -92.71 -0.77 14.70 16 38 H 0.13 3.91 4.96 -2.38 -0.01 3.90 16 39 H 0.08 3.04 6.97 -2.39 -0.02 3.02 16 40 H 0.12 2.90 8.14 -2.38 -0.02 2.88 16 41 H 0.13 2.76 8.14 -2.39 -0.02 2.74 16 42 H 0.07 2.52 8.14 -2.39 -0.02 2.50 16 43 H 0.09 3.59 7.91 -2.39 -0.02 3.57 16 44 H 0.14 3.59 6.50 -2.39 -0.02 3.58 16 45 H 0.14 2.64 7.37 -2.91 -0.02 2.62 16 Total: -1.00 -82.73 369.07 5.80 -76.93 By element: Atomic # 1 Polarization: 21.50 SS G_CDS: 1.01 Total: 22.51 kcal Atomic # 6 Polarization: -15.01 SS G_CDS: 4.67 Total: -10.33 kcal Atomic # 7 Polarization: -86.85 SS G_CDS: -1.88 Total: -88.73 kcal Atomic # 8 Polarization: -48.71 SS G_CDS: -0.03 Total: -48.74 kcal Atomic # 14 Polarization: 46.35 SS G_CDS: 2.03 Total: 48.38 kcal Total: -82.73 5.80 -76.93 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000888556382.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.717 kcal (2) G-P(sol) polarization free energy of solvation -82.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.805 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.926 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds