Wall clock time and date at job start Tue Mar 31 2020 14:56:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38121 * 126.29526 * 2 1 4 4 C 1.47284 * 126.43061 * 0.02562 * 3 2 1 5 5 O 1.21524 * 119.99624 * 0.02562 * 4 3 2 6 6 O 1.34756 * 120.00155 * 180.02562 * 4 3 2 7 7 C 1.45194 * 117.00057 * 180.02562 * 6 4 3 8 8 C 1.52997 * 109.47339 * 179.97438 * 7 6 4 9 9 C 1.50701 * 109.47212 * 179.97438 * 8 7 6 10 10 C 1.38233 * 120.00099 * 269.72808 * 9 8 7 11 11 C 1.38236 * 119.99664 * 179.74641 * 10 9 8 12 12 C 1.38232 * 120.00296 * 0.54723 * 11 10 9 13 13 C 1.50697 * 120.00042 * 179.72841 * 12 11 10 14 14 C 1.38238 * 119.99892 * 359.70748 * 12 11 10 15 15 C 1.38238 * 120.00072 * 0.02562 * 14 12 11 16 16 C 1.41347 * 107.14485 * 180.27817 * 3 2 1 17 17 N 1.30434 * 108.01305 * 359.55248 * 16 3 2 18 18 N 1.34225 * 126.29267 * 180.02562 * 2 1 3 19 19 C 1.46503 * 125.74664 * 359.94805 * 18 2 1 20 20 C 1.50706 * 109.46875 * 89.99816 * 19 18 2 21 21 H 1.07998 * 120.00114 * 0.02562 * 20 19 18 22 22 C 1.37877 * 119.99728 * 179.97438 * 20 19 18 23 23 N 1.31510 * 120.00186 * 0.02562 * 22 20 19 24 24 Si 1.86804 * 119.99666 * 179.97438 * 22 20 19 25 25 H 1.48500 * 109.46945 * 60.00362 * 24 22 20 26 26 H 1.48495 * 109.46868 * 180.02562 * 24 22 20 27 27 H 1.48498 * 109.47180 * 300.00603 * 24 22 20 28 28 H 1.09000 * 109.46688 * 89.98045 * 1 2 3 29 29 H 1.08999 * 109.47718 * 209.97516 * 1 2 3 30 30 H 1.09000 * 109.47642 * 329.98440 * 1 2 3 31 31 H 1.09002 * 109.47239 * 59.99594 * 7 6 4 32 32 H 1.08998 * 109.46869 * 300.00319 * 7 6 4 33 33 H 1.09002 * 109.47153 * 59.99705 * 8 7 6 34 34 H 1.09001 * 109.46832 * 299.99896 * 8 7 6 35 35 H 1.08003 * 119.99927 * 359.97438 * 10 9 8 36 36 H 1.08004 * 119.99448 * 180.27540 * 11 10 9 37 37 H 1.09003 * 109.46652 * 269.97322 * 13 12 11 38 38 H 1.08995 * 109.47599 * 29.97594 * 13 12 11 39 39 H 1.09002 * 109.47019 * 149.97996 * 13 12 11 40 40 H 1.08002 * 119.99952 * 180.02562 * 14 12 11 41 41 H 1.07991 * 120.00062 * 179.97438 * 15 14 12 42 42 H 1.07996 * 125.99807 * 179.73608 * 16 3 2 43 43 H 1.08996 * 109.47179 * 209.99990 * 19 18 2 44 44 H 1.08999 * 109.47091 * 330.00123 * 19 18 2 45 45 H 0.96996 * 120.00364 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3246 1.1132 0.0000 4 6 1.8872 2.5196 0.0005 5 8 0.7018 2.7873 0.0015 6 8 2.8015 3.5096 -0.0001 7 6 2.2984 4.8716 0.0011 8 6 3.4747 5.8499 0.0009 9 6 2.9525 7.2635 0.0014 10 6 2.7178 7.9141 -1.1954 11 6 2.2337 9.2090 -1.1948 12 6 1.9951 9.8572 0.0025 13 6 1.4733 11.2709 0.0031 14 6 2.2348 9.2084 1.1994 15 6 2.7136 7.9116 1.1989 16 6 3.6598 0.6495 -0.0066 17 7 3.6340 -0.6545 -0.0005 18 7 2.3015 -1.0819 -0.0005 19 6 1.8497 -2.4755 0.0000 20 6 1.6937 -2.9534 -1.4208 21 1 1.9099 -2.2860 -2.2418 22 6 1.2761 -4.2431 -1.6723 23 7 1.0133 -5.0560 -0.6725 24 14 1.0820 -4.8353 -3.4333 25 1 2.3872 -4.7376 -4.1350 26 1 0.6242 -6.2479 -3.4329 27 1 0.0800 -3.9908 -4.1320 28 1 -0.3633 0.0004 -1.0277 29 1 -0.3634 -0.8902 0.5134 30 1 -0.3634 0.8898 0.5141 31 1 1.6914 5.0339 0.8918 32 1 1.6895 5.0347 -0.8881 33 1 4.0820 5.6876 -0.8896 34 1 4.0832 5.6866 0.8903 35 1 2.9091 7.4095 -2.1310 36 1 2.0462 9.7157 -2.1300 37 1 2.3116 11.9676 0.0032 38 1 0.8652 11.4342 -0.8866 39 1 0.8657 11.4335 0.8933 40 1 2.0480 9.7146 2.1350 41 1 2.9013 7.4049 2.1339 42 1 4.5461 1.2667 -0.0123 43 1 2.5846 -3.0955 0.5133 44 1 0.8914 -2.5466 0.5145 45 1 0.7191 -5.9632 -0.8494 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000889030617.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:56:10 Heat of formation + Delta-G solvation = -12.363717 kcal Electronic energy + Delta-G solvation = -25966.021751 eV Core-core repulsion = 22142.225327 eV Total energy + Delta-G solvation = -3823.796424 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.88150 -39.91572 -39.41633 -36.29652 -34.48180 -33.92059 -32.16087 -31.33432 -31.22167 -30.76557 -27.81637 -26.84540 -26.44981 -23.84553 -23.13813 -23.02676 -22.11074 -20.87304 -20.28045 -18.90920 -17.41611 -16.81661 -16.46087 -16.30280 -16.19689 -15.60499 -15.33055 -15.14990 -14.59734 -14.41753 -14.16328 -13.75803 -13.69641 -13.56251 -13.29624 -13.07912 -12.73730 -12.63591 -12.50084 -12.30173 -12.15569 -11.83781 -11.79932 -11.64724 -11.54840 -11.37573 -11.22399 -11.15875 -10.89044 -10.42928 -10.40042 -10.30278 -9.98564 -9.80508 -9.21371 -8.80934 -8.72925 -8.65220 -8.07176 -6.35907 -4.44121 0.98262 1.11375 1.92590 2.71196 2.81410 3.18878 3.23016 3.25590 3.37094 3.50424 3.68202 4.22470 4.47157 4.48228 4.67454 4.72464 4.76985 4.91905 4.98955 5.03851 5.14387 5.16828 5.21077 5.22429 5.29484 5.36809 5.42478 5.49660 5.58505 5.63561 5.75592 5.80660 5.84866 5.97939 6.04063 6.11876 6.28999 6.33904 6.36209 6.39280 6.70732 6.72508 6.79342 6.87006 7.13140 7.51446 7.70945 7.74099 8.19178 8.35012 8.60823 9.22937 10.72278 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.028433 B = 0.001859 C = 0.001834 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 984.544031 B =15059.201257 C =15266.370028 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C 0.172 3.828 3 C -0.319 4.319 4 C 0.551 3.449 5 O -0.530 6.530 6 O -0.357 6.357 7 C 0.076 3.924 8 C -0.079 4.079 9 C -0.087 4.087 10 C -0.108 4.108 11 C -0.120 4.120 12 C -0.090 4.090 13 C -0.115 4.115 14 C -0.120 4.120 15 C -0.108 4.108 16 C 0.080 3.920 17 N -0.297 5.297 18 N -0.311 5.311 19 C 0.251 3.749 20 C -0.542 4.542 21 H 0.065 0.935 22 C 0.068 3.932 23 N -0.889 5.889 24 Si 0.909 3.091 25 H -0.273 1.273 26 H -0.283 1.283 27 H -0.273 1.273 28 H 0.086 0.914 29 H 0.077 0.923 30 H 0.093 0.907 31 H 0.068 0.932 32 H 0.068 0.932 33 H 0.085 0.915 34 H 0.084 0.916 35 H 0.124 0.876 36 H 0.122 0.878 37 H 0.069 0.931 38 H 0.066 0.934 39 H 0.066 0.934 40 H 0.122 0.878 41 H 0.124 0.876 42 H 0.185 0.815 43 H 0.059 0.941 44 H 0.058 0.942 45 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.962 27.015 2.722 27.223 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.034 3.966 3 C -0.332 4.332 4 C 0.399 3.601 5 O -0.421 6.421 6 O -0.274 6.274 7 C 0.002 3.998 8 C -0.117 4.117 9 C -0.087 4.087 10 C -0.126 4.126 11 C -0.138 4.138 12 C -0.090 4.090 13 C -0.172 4.172 14 C -0.138 4.138 15 C -0.126 4.126 16 C -0.107 4.107 17 N -0.116 5.116 18 N -0.087 5.087 19 C 0.134 3.866 20 C -0.581 4.581 21 H 0.084 0.916 22 C -0.136 4.136 23 N -0.526 5.526 24 Si 0.735 3.265 25 H -0.199 1.199 26 H -0.208 1.208 27 H -0.198 1.198 28 H 0.105 0.895 29 H 0.095 0.905 30 H 0.111 0.889 31 H 0.087 0.913 32 H 0.087 0.913 33 H 0.103 0.897 34 H 0.103 0.897 35 H 0.142 0.858 36 H 0.140 0.860 37 H 0.088 0.912 38 H 0.085 0.915 39 H 0.085 0.915 40 H 0.140 0.860 41 H 0.142 0.858 42 H 0.202 0.798 43 H 0.077 0.923 44 H 0.076 0.924 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 2.248 25.652 2.787 25.901 hybrid contribution -0.601 0.356 -0.961 1.187 sum 1.647 26.008 1.826 26.124 Atomic orbital electron populations 1.20619 0.86575 1.04007 1.04179 1.21451 0.94969 0.86460 0.93728 1.18834 0.93790 0.89290 1.31320 1.20032 0.83364 0.84920 0.71797 1.90761 1.18003 1.84566 1.48747 1.86506 1.40078 1.15685 1.85158 1.22873 0.96131 0.78081 1.02728 1.20500 0.97162 0.89284 1.04722 1.19662 1.00303 0.95325 0.93428 1.21106 0.98936 0.94860 0.97714 1.21035 1.00177 0.94988 0.97579 1.19956 0.99231 0.96542 0.93287 1.20797 1.00870 0.92666 1.02820 1.21033 1.00238 0.94959 0.97572 1.21097 0.99003 0.94848 0.97681 1.23924 0.96640 0.92116 0.98011 1.77218 0.98241 1.12348 1.23833 1.49427 1.02625 1.08293 1.48333 1.19902 0.96519 0.70653 0.99560 1.21205 1.47731 0.98220 0.90916 0.91649 1.24917 0.94374 0.95939 0.98344 1.69897 1.44287 1.07236 1.31202 0.86368 0.78908 0.77760 0.83424 1.19864 1.20844 1.19845 0.89525 0.90466 0.88880 0.91338 0.91313 0.89686 0.89697 0.85779 0.86034 0.91205 0.91536 0.91544 0.86043 0.85800 0.79798 0.92300 0.92446 0.92008 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.69 9.57 36.00 0.34 -1.35 16 2 C 0.17 3.49 7.01 -81.59 -0.57 2.92 16 3 C -0.32 -6.03 6.13 -105.08 -0.64 -6.67 16 4 C 0.55 9.62 7.95 34.41 0.27 9.89 16 5 O -0.53 -9.96 14.63 -19.28 -0.28 -10.25 16 6 O -0.36 -5.22 10.07 -40.64 -0.41 -5.63 16 7 C 0.08 0.90 5.46 37.16 0.20 1.10 16 8 C -0.08 -0.72 5.73 -27.88 -0.16 -0.88 16 9 C -0.09 -0.78 5.13 -104.62 -0.54 -1.32 16 10 C -0.11 -0.93 9.70 -39.58 -0.38 -1.32 16 11 C -0.12 -0.96 9.70 -39.58 -0.38 -1.35 16 12 C -0.09 -0.70 5.88 -104.63 -0.62 -1.32 16 13 C -0.11 -0.62 10.01 36.00 0.36 -0.26 16 14 C -0.12 -0.95 9.70 -39.58 -0.38 -1.34 16 15 C -0.11 -0.92 9.70 -39.58 -0.38 -1.31 16 16 C 0.08 1.47 11.87 -16.96 -0.20 1.27 16 17 N -0.30 -6.46 12.50 30.87 0.39 -6.07 16 18 N -0.31 -7.01 3.56 -57.76 -0.21 -7.21 16 19 C 0.25 6.17 5.97 -5.19 -0.03 6.14 16 20 C -0.54 -14.49 9.39 -34.44 -0.32 -14.81 16 21 H 0.07 1.79 7.81 -52.49 -0.41 1.38 16 22 C 0.07 1.82 5.46 -17.82 -0.10 1.72 16 23 N -0.89 -24.35 13.29 55.43 0.74 -23.61 16 24 Si 0.91 20.66 29.54 -169.99 -5.02 15.64 16 25 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 26 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 27 H -0.27 -6.13 7.11 56.52 0.40 -5.72 16 28 H 0.09 1.50 8.14 -51.93 -0.42 1.08 16 29 H 0.08 1.32 7.05 -51.93 -0.37 0.95 16 30 H 0.09 1.55 6.50 -51.93 -0.34 1.21 16 31 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.08 0.72 8.08 -51.93 -0.42 0.30 16 34 H 0.08 0.71 8.09 -51.93 -0.42 0.29 16 35 H 0.12 0.91 8.06 -52.48 -0.42 0.49 16 36 H 0.12 0.76 8.06 -52.48 -0.42 0.33 16 37 H 0.07 0.33 8.14 -51.93 -0.42 -0.10 16 38 H 0.07 0.32 8.08 -51.93 -0.42 -0.10 16 39 H 0.07 0.31 8.09 -51.93 -0.42 -0.11 16 40 H 0.12 0.74 8.06 -52.49 -0.42 0.32 16 41 H 0.12 0.89 8.06 -52.49 -0.42 0.46 16 42 H 0.19 2.63 8.06 -52.49 -0.42 2.21 16 43 H 0.06 1.54 8.14 -51.93 -0.42 1.12 16 44 H 0.06 1.39 7.01 -51.93 -0.36 1.03 16 45 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 LS Contribution 389.27 15.07 5.87 5.87 Total: -1.00 -30.31 389.27 -8.98 -39.29 By element: Atomic # 1 Polarization: 7.37 SS G_CDS: -6.52 Total: 0.85 kcal Atomic # 6 Polarization: -5.34 SS G_CDS: -3.53 Total: -8.88 kcal Atomic # 7 Polarization: -37.81 SS G_CDS: 0.92 Total: -36.90 kcal Atomic # 8 Polarization: -15.19 SS G_CDS: -0.69 Total: -15.88 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.02 Total: 15.64 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -30.31 -8.98 -39.29 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000889030617.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.928 kcal (2) G-P(sol) polarization free energy of solvation -30.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.985 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.291 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.364 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds