Wall clock time and date at job start Tue Mar 31 2020 14:56:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38121 * 126.29526 * 2 1 4 4 C 1.47284 * 126.43061 * 0.02562 * 3 2 1 5 5 O 1.21524 * 119.99624 * 0.02562 * 4 3 2 6 6 O 1.34756 * 120.00155 * 180.02562 * 4 3 2 7 7 C 1.45194 * 117.00057 * 180.02562 * 6 4 3 8 8 C 1.52997 * 109.47339 * 179.97438 * 7 6 4 9 9 C 1.50701 * 109.47212 * 179.97438 * 8 7 6 10 10 C 1.38233 * 120.00099 * 269.72808 * 9 8 7 11 11 C 1.38236 * 119.99664 * 179.74641 * 10 9 8 12 12 C 1.38232 * 120.00296 * 0.54723 * 11 10 9 13 13 C 1.50697 * 120.00042 * 179.72841 * 12 11 10 14 14 C 1.38238 * 119.99892 * 359.70748 * 12 11 10 15 15 C 1.38238 * 120.00072 * 0.02562 * 14 12 11 16 16 C 1.41347 * 107.14485 * 180.27817 * 3 2 1 17 17 N 1.30434 * 108.01305 * 359.55248 * 16 3 2 18 18 N 1.34225 * 126.29267 * 180.02562 * 2 1 3 19 19 C 1.46503 * 125.74664 * 359.94805 * 18 2 1 20 20 C 1.50706 * 109.46875 * 89.99816 * 19 18 2 21 21 H 1.07998 * 120.00114 * 0.02562 * 20 19 18 22 22 C 1.37877 * 119.99728 * 179.97438 * 20 19 18 23 23 N 1.31510 * 120.00186 * 0.02562 * 22 20 19 24 24 Si 1.86804 * 119.99666 * 179.97438 * 22 20 19 25 25 H 1.48500 * 109.46945 * 60.00362 * 24 22 20 26 26 H 1.48495 * 109.46868 * 180.02562 * 24 22 20 27 27 H 1.48498 * 109.47180 * 300.00603 * 24 22 20 28 28 H 1.09000 * 109.46688 * 89.98045 * 1 2 3 29 29 H 1.08999 * 109.47718 * 209.97516 * 1 2 3 30 30 H 1.09000 * 109.47642 * 329.98440 * 1 2 3 31 31 H 1.09002 * 109.47239 * 59.99594 * 7 6 4 32 32 H 1.08998 * 109.46869 * 300.00319 * 7 6 4 33 33 H 1.09002 * 109.47153 * 59.99705 * 8 7 6 34 34 H 1.09001 * 109.46832 * 299.99896 * 8 7 6 35 35 H 1.08003 * 119.99927 * 359.97438 * 10 9 8 36 36 H 1.08004 * 119.99448 * 180.27540 * 11 10 9 37 37 H 1.09003 * 109.46652 * 269.97322 * 13 12 11 38 38 H 1.08995 * 109.47599 * 29.97594 * 13 12 11 39 39 H 1.09002 * 109.47019 * 149.97996 * 13 12 11 40 40 H 1.08002 * 119.99952 * 180.02562 * 14 12 11 41 41 H 1.07991 * 120.00062 * 179.97438 * 15 14 12 42 42 H 1.07996 * 125.99807 * 179.73608 * 16 3 2 43 43 H 1.08996 * 109.47179 * 209.99990 * 19 18 2 44 44 H 1.08999 * 109.47091 * 330.00123 * 19 18 2 45 45 H 0.96996 * 120.00364 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3246 1.1132 0.0000 4 6 1.8872 2.5196 0.0005 5 8 0.7018 2.7873 0.0015 6 8 2.8015 3.5096 -0.0001 7 6 2.2984 4.8716 0.0011 8 6 3.4747 5.8499 0.0009 9 6 2.9525 7.2635 0.0014 10 6 2.7178 7.9141 -1.1954 11 6 2.2337 9.2090 -1.1948 12 6 1.9951 9.8572 0.0025 13 6 1.4733 11.2709 0.0031 14 6 2.2348 9.2084 1.1994 15 6 2.7136 7.9116 1.1989 16 6 3.6598 0.6495 -0.0066 17 7 3.6340 -0.6545 -0.0005 18 7 2.3015 -1.0819 -0.0005 19 6 1.8497 -2.4755 0.0000 20 6 1.6937 -2.9534 -1.4208 21 1 1.9099 -2.2860 -2.2418 22 6 1.2761 -4.2431 -1.6723 23 7 1.0133 -5.0560 -0.6725 24 14 1.0820 -4.8353 -3.4333 25 1 2.3872 -4.7376 -4.1350 26 1 0.6242 -6.2479 -3.4329 27 1 0.0800 -3.9908 -4.1320 28 1 -0.3633 0.0004 -1.0277 29 1 -0.3634 -0.8902 0.5134 30 1 -0.3634 0.8898 0.5141 31 1 1.6914 5.0339 0.8918 32 1 1.6895 5.0347 -0.8881 33 1 4.0820 5.6876 -0.8896 34 1 4.0832 5.6866 0.8903 35 1 2.9091 7.4095 -2.1310 36 1 2.0462 9.7157 -2.1300 37 1 2.3116 11.9676 0.0032 38 1 0.8652 11.4342 -0.8866 39 1 0.8657 11.4335 0.8933 40 1 2.0480 9.7146 2.1350 41 1 2.9013 7.4049 2.1339 42 1 4.5461 1.2667 -0.0123 43 1 2.5846 -3.0955 0.5133 44 1 0.8914 -2.5466 0.5145 45 1 0.7191 -5.9632 -0.8494 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000889030617.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:56:09 Heat of formation + Delta-G solvation = -25.917058 kcal Electronic energy + Delta-G solvation = -25966.609468 eV Core-core repulsion = 22142.225327 eV Total energy + Delta-G solvation = -3824.384141 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.42364 -40.98274 -40.28271 -37.53430 -35.84019 -35.18565 -33.90015 -32.88323 -31.80646 -31.54473 -29.43926 -28.40117 -27.29093 -25.51018 -24.31662 -23.61746 -23.34947 -21.77959 -21.48470 -20.47152 -18.92971 -18.69853 -17.61527 -17.54738 -16.94500 -16.74900 -16.45080 -16.25439 -15.94807 -15.90862 -15.18823 -14.78980 -14.74110 -14.46280 -14.31026 -14.23281 -14.12515 -13.76465 -13.67453 -13.58404 -13.17821 -13.16017 -13.11811 -13.00572 -12.69352 -12.62414 -12.42058 -12.30823 -11.99706 -11.89194 -11.83860 -11.81802 -11.43920 -11.28288 -10.75915 -10.33254 -9.81769 -9.66489 -9.41584 -8.38261 -6.54576 0.35906 0.42652 0.51083 1.18975 1.38457 1.39576 1.43430 1.50649 1.92077 2.24011 2.32749 2.83419 2.94482 3.65515 3.69713 3.85104 3.89332 3.98604 4.07875 4.09921 4.12490 4.17839 4.20311 4.39652 4.45296 4.53865 4.60154 4.61051 4.75586 4.79570 4.83856 4.85503 4.92356 4.92461 4.99092 5.07337 5.11331 5.21998 5.31117 5.45471 5.48540 5.52097 5.61353 5.70597 5.72391 5.73396 5.96348 6.13562 6.53206 6.72444 6.89672 7.16519 8.69561 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.028433 B = 0.001859 C = 0.001834 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 984.544031 B =15059.201257 C =15266.370028 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C 0.160 3.840 3 C -0.322 4.322 4 C 0.558 3.442 5 O -0.545 6.545 6 O -0.350 6.350 7 C 0.074 3.926 8 C -0.069 4.069 9 C -0.101 4.101 10 C -0.120 4.120 11 C -0.131 4.131 12 C -0.098 4.098 13 C -0.114 4.114 14 C -0.131 4.131 15 C -0.119 4.119 16 C 0.098 3.902 17 N -0.335 5.335 18 N -0.333 5.333 19 C 0.266 3.734 20 C -0.558 4.558 21 H 0.053 0.947 22 C 0.026 3.974 23 N -0.915 5.915 24 Si 0.970 3.030 25 H -0.274 1.274 26 H -0.273 1.273 27 H -0.266 1.266 28 H 0.089 0.911 29 H 0.078 0.922 30 H 0.103 0.897 31 H 0.067 0.933 32 H 0.065 0.935 33 H 0.091 0.909 34 H 0.093 0.907 35 H 0.132 0.868 36 H 0.136 0.864 37 H 0.078 0.922 38 H 0.072 0.928 39 H 0.073 0.927 40 H 0.137 0.863 41 H 0.134 0.866 42 H 0.226 0.774 43 H 0.034 0.966 44 H 0.056 0.944 45 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.091 28.952 2.081 29.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.023 3.977 3 C -0.336 4.336 4 C 0.405 3.595 5 O -0.437 6.437 6 O -0.267 6.267 7 C 0.001 3.999 8 C -0.106 4.106 9 C -0.101 4.101 10 C -0.138 4.138 11 C -0.149 4.149 12 C -0.098 4.098 13 C -0.171 4.171 14 C -0.148 4.148 15 C -0.136 4.136 16 C -0.089 4.089 17 N -0.154 5.154 18 N -0.110 5.110 19 C 0.147 3.853 20 C -0.596 4.596 21 H 0.071 0.929 22 C -0.176 4.176 23 N -0.553 5.553 24 Si 0.794 3.206 25 H -0.199 1.199 26 H -0.198 1.198 27 H -0.191 1.191 28 H 0.107 0.893 29 H 0.097 0.903 30 H 0.122 0.878 31 H 0.086 0.914 32 H 0.083 0.917 33 H 0.110 0.890 34 H 0.112 0.888 35 H 0.150 0.850 36 H 0.154 0.846 37 H 0.097 0.903 38 H 0.091 0.909 39 H 0.092 0.908 40 H 0.155 0.845 41 H 0.152 0.848 42 H 0.242 0.758 43 H 0.052 0.948 44 H 0.073 0.927 45 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 2.384 27.619 2.154 27.805 hybrid contribution -0.613 -0.062 -0.718 0.946 sum 1.771 27.556 1.436 27.651 Atomic orbital electron populations 1.20648 0.85197 1.04548 1.04448 1.21949 0.96073 0.86371 0.93273 1.19056 0.93912 0.89958 1.30634 1.19766 0.83334 0.84915 0.71450 1.90753 1.18722 1.84837 1.49421 1.86486 1.39248 1.16486 1.84451 1.23123 0.97481 0.76813 1.02524 1.20433 0.96083 0.88551 1.05518 1.19708 1.01282 0.95287 0.93864 1.21317 0.99048 0.95354 0.98037 1.21304 1.00095 0.95002 0.98490 1.20309 0.98651 0.97635 0.93189 1.20839 1.01328 0.91369 1.03522 1.21312 1.00082 0.94974 0.98476 1.21319 0.98995 0.95314 0.98012 1.24568 0.97787 0.91234 0.95295 1.77175 0.98157 1.14176 1.25874 1.49187 1.03400 1.07888 1.50476 1.19459 0.95585 0.71899 0.98323 1.21363 1.48197 0.98575 0.91511 0.92889 1.25702 0.93779 0.95887 1.02211 1.69978 1.44621 1.07619 1.33054 0.85415 0.78804 0.77695 0.78677 1.19923 1.19788 1.19099 0.89284 0.90349 0.87803 0.91443 0.91679 0.89004 0.88817 0.84999 0.84566 0.90328 0.90892 0.90833 0.84468 0.84837 0.75821 0.94759 0.92658 0.91618 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -3.18 9.57 71.24 0.68 -2.50 16 2 C 0.16 6.49 7.01 42.16 0.30 6.79 16 3 C -0.32 -11.86 6.13 -20.16 -0.12 -11.99 16 4 C 0.56 18.66 7.95 70.20 0.56 19.22 16 5 O -0.55 -19.86 14.63 19.76 0.29 -19.57 16 6 O -0.35 -9.55 10.07 -56.67 -0.57 -10.12 16 7 C 0.07 1.63 5.46 71.98 0.39 2.02 16 8 C -0.07 -1.12 5.73 29.85 0.17 -0.95 16 9 C -0.10 -1.69 5.13 -19.86 -0.10 -1.79 16 10 C -0.12 -1.91 9.70 22.27 0.22 -1.70 16 11 C -0.13 -1.92 9.70 22.27 0.22 -1.70 16 12 C -0.10 -1.37 5.88 -19.87 -0.12 -1.49 16 13 C -0.11 -1.02 10.01 71.23 0.71 -0.30 16 14 C -0.13 -1.88 9.70 22.27 0.22 -1.66 16 15 C -0.12 -1.85 9.70 22.27 0.22 -1.64 16 16 C 0.10 3.46 11.87 85.67 1.02 4.48 16 17 N -0.33 -14.57 12.50 -56.24 -0.70 -15.27 16 18 N -0.33 -15.27 3.56 -336.65 -1.20 -16.47 16 19 C 0.27 13.49 5.97 85.63 0.51 14.00 16 20 C -0.56 -30.35 9.39 25.60 0.24 -30.11 16 21 H 0.05 2.95 7.81 -2.91 -0.02 2.93 16 22 C 0.03 1.38 5.46 84.66 0.46 1.84 16 23 N -0.92 -50.51 13.29 21.45 0.28 -50.23 16 24 Si 0.97 42.15 29.54 68.60 2.03 44.18 16 25 H -0.27 -11.86 7.11 99.48 0.71 -11.16 16 26 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 27 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 28 H 0.09 3.07 8.14 -2.39 -0.02 3.05 16 29 H 0.08 2.70 7.05 -2.39 -0.02 2.68 16 30 H 0.10 3.39 6.50 -2.39 -0.02 3.38 16 31 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 32 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 33 H 0.09 1.37 8.08 -2.39 -0.02 1.35 16 34 H 0.09 1.36 8.09 -2.39 -0.02 1.34 16 35 H 0.13 1.78 8.06 -2.91 -0.02 1.76 16 36 H 0.14 1.48 8.06 -2.91 -0.02 1.45 16 37 H 0.08 0.57 8.14 -2.39 -0.02 0.55 16 38 H 0.07 0.55 8.08 -2.39 -0.02 0.53 16 39 H 0.07 0.55 8.09 -2.39 -0.02 0.53 16 40 H 0.14 1.43 8.06 -2.91 -0.02 1.40 16 41 H 0.13 1.71 8.06 -2.92 -0.02 1.69 16 42 H 0.23 5.75 8.06 -2.91 -0.02 5.73 16 43 H 0.03 1.88 8.14 -2.39 -0.02 1.86 16 44 H 0.06 2.78 7.01 -2.39 -0.02 2.76 16 45 H 0.27 14.22 8.31 -92.71 -0.77 13.45 16 Total: -1.00 -64.52 389.27 6.68 -57.84 By element: Atomic # 1 Polarization: 16.13 SS G_CDS: 0.99 Total: 17.12 kcal Atomic # 6 Polarization: -13.04 SS G_CDS: 5.56 Total: -7.48 kcal Atomic # 7 Polarization: -80.35 SS G_CDS: -1.62 Total: -81.97 kcal Atomic # 8 Polarization: -29.41 SS G_CDS: -0.28 Total: -29.69 kcal Atomic # 14 Polarization: 42.15 SS G_CDS: 2.03 Total: 44.18 kcal Total: -64.52 6.68 -57.84 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000889030617.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.919 kcal (2) G-P(sol) polarization free energy of solvation -64.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.836 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds