Wall clock time and date at job start Tue Mar 31 2020 14:57:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38123 * 126.29446 * 2 1 4 4 C 1.47290 * 126.42664 * 0.02562 * 3 2 1 5 5 O 1.21521 * 119.99913 * 0.02562 * 4 3 2 6 6 O 1.34760 * 119.99675 * 179.97438 * 4 3 2 7 7 C 1.45199 * 116.99442 * 180.02562 * 6 4 3 8 8 H 1.08996 * 109.47415 * 30.00137 * 7 6 4 9 9 C 1.53008 * 109.46941 * 269.99986 * 7 6 4 10 10 C 1.50696 * 109.47000 * 150.00424 * 7 6 4 11 11 C 1.38258 * 120.00089 * 39.71846 * 10 7 6 12 12 C 1.38219 * 120.00036 * 179.76580 * 11 10 7 13 13 C 1.38252 * 120.00027 * 0.51377 * 12 11 10 14 14 C 1.38222 * 119.99591 * 359.74508 * 13 12 11 15 15 C 1.50700 * 119.99744 * 179.97438 * 14 13 12 16 16 C 1.38216 * 120.00112 * 219.99923 * 10 7 6 17 17 C 1.41344 * 107.14503 * 180.02562 * 3 2 1 18 18 N 1.30431 * 108.01197 * 359.73408 * 17 3 2 19 19 N 1.34222 * 126.29232 * 180.02562 * 2 1 3 20 20 C 1.46491 * 125.74900 * 359.97341 * 19 2 1 21 21 C 1.50702 * 109.46957 * 90.00099 * 20 19 2 22 22 H 1.08002 * 120.00299 * 0.02562 * 21 20 19 23 23 C 1.37884 * 119.99942 * 179.72213 * 21 20 19 24 24 N 1.31514 * 119.99698 * 0.28408 * 23 21 20 25 25 Si 1.86794 * 119.99837 * 180.27476 * 23 21 20 26 26 H 1.48504 * 109.47196 * 60.00645 * 25 23 21 27 27 H 1.48504 * 109.46887 * 180.02562 * 25 23 21 28 28 H 1.48502 * 109.47679 * 300.00280 * 25 23 21 29 29 H 1.08993 * 109.46826 * 270.00042 * 1 2 3 30 30 H 1.09001 * 109.47180 * 30.00515 * 1 2 3 31 31 H 1.08998 * 109.46656 * 150.00205 * 1 2 3 32 32 H 1.09004 * 109.46920 * 300.00353 * 9 7 6 33 33 H 1.09000 * 109.46947 * 60.00314 * 9 7 6 34 34 H 1.09002 * 109.46467 * 180.02562 * 9 7 6 35 35 H 1.08005 * 120.00294 * 0.02562 * 11 10 7 36 36 H 1.07997 * 119.99651 * 180.23475 * 12 11 10 37 37 H 1.07994 * 120.00251 * 179.72205 * 13 12 11 38 38 H 1.09000 * 109.47260 * 270.02444 * 15 14 13 39 39 H 1.09007 * 109.47354 * 30.02237 * 15 14 13 40 40 H 1.08999 * 109.47204 * 150.02031 * 15 14 13 41 41 H 1.07993 * 119.99494 * 359.97438 * 16 10 7 42 42 H 1.08003 * 125.99161 * 180.02562 * 17 3 2 43 43 H 1.09004 * 109.47166 * 330.00365 * 20 19 2 44 44 H 1.08994 * 109.47507 * 210.00071 * 20 19 2 45 45 H 0.97005 * 119.99651 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3247 1.1133 0.0000 4 6 1.8872 2.5197 0.0005 5 8 0.7018 2.7873 0.0015 6 8 2.8015 3.5097 0.0010 7 6 2.2982 4.8716 0.0021 8 1 1.3376 4.9036 0.5162 9 6 2.1210 5.3510 -1.4401 10 6 3.2785 5.7688 0.7127 11 6 4.6372 5.5910 0.5289 12 6 5.5362 6.4170 1.1770 13 6 5.0770 7.4142 2.0173 14 6 3.7188 7.5885 2.2052 15 6 3.2182 8.6751 3.1216 16 6 2.8194 6.7657 1.5529 17 6 3.6599 0.6496 -0.0006 18 7 3.6340 -0.6544 0.0048 19 7 2.3015 -1.0818 -0.0005 20 6 1.8499 -2.4754 -0.0006 21 6 1.6945 -2.9530 -1.4214 22 1 1.9110 -2.2853 -2.2423 23 6 1.2819 -4.2443 -1.6735 24 7 1.0187 -5.0574 -0.6739 25 14 1.0967 -4.8386 -3.4346 26 1 2.4043 -4.7374 -4.1313 27 1 0.6435 -6.2528 -3.4347 28 1 0.0947 -3.9981 -4.1381 29 1 -0.3633 0.0000 1.0276 30 1 -0.3633 0.8899 -0.5139 31 1 -0.3632 -0.8900 -0.5138 32 1 3.0817 5.3190 -1.9542 33 1 1.4120 4.7021 -1.9542 34 1 1.7436 6.3736 -1.4392 35 1 4.9961 4.8094 -0.1243 36 1 6.5974 6.2805 1.0304 37 1 5.7795 8.0567 2.5272 38 1 3.1233 8.2817 4.1337 39 1 3.9239 9.5059 3.1195 40 1 2.2456 9.0237 2.7745 41 1 1.7582 6.9019 1.6996 42 1 4.5461 1.2669 -0.0004 43 1 0.8913 -2.5467 0.5136 44 1 2.5846 -3.0955 0.5129 45 1 0.7281 -5.9657 -0.8512 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000889055126.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:57:28 Heat of formation + Delta-G solvation = -7.532852 kcal Electronic energy + Delta-G solvation = -26836.159294 eV Core-core repulsion = 23012.572352 eV Total energy + Delta-G solvation = -3823.586942 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.91859 -40.13002 -39.17314 -36.31607 -33.97280 -33.55214 -32.38869 -32.12285 -31.22258 -29.62328 -27.64465 -27.12384 -26.75623 -24.48486 -23.48257 -22.39097 -22.26599 -20.68715 -19.84530 -18.93949 -17.43721 -16.94813 -16.81510 -16.19943 -15.72168 -15.54978 -15.17277 -14.78528 -14.53463 -14.36721 -14.10837 -13.83929 -13.43231 -13.34116 -13.22433 -13.06982 -12.63161 -12.54855 -12.51854 -12.30119 -12.12555 -12.07876 -11.83996 -11.64696 -11.55155 -11.31836 -11.16419 -10.92230 -10.89642 -10.52467 -10.42311 -10.30085 -9.99035 -9.79942 -9.03157 -8.80523 -8.73498 -8.64844 -8.07700 -6.36365 -4.44719 1.08569 1.19151 1.92087 2.70935 2.81622 3.18562 3.22758 3.25486 3.39606 3.57037 3.68290 4.22078 4.40338 4.59506 4.68542 4.89854 4.96729 4.98425 5.01876 5.09988 5.13948 5.17631 5.28334 5.32154 5.37318 5.42735 5.53800 5.60079 5.66419 5.72048 5.80331 5.89390 5.97512 6.00122 6.02394 6.27185 6.32009 6.35424 6.41767 6.49984 6.71705 6.79098 6.81118 6.86226 7.13120 7.51219 7.70942 7.73685 8.18804 8.34854 8.60554 9.22412 10.71738 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.025985 B = 0.002287 C = 0.002253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1077.283484 B =12240.987976 C =12422.970002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C 0.172 3.828 3 C -0.318 4.318 4 C 0.552 3.448 5 O -0.530 6.530 6 O -0.347 6.347 7 C 0.129 3.871 8 H 0.092 0.908 9 C -0.163 4.163 10 C -0.082 4.082 11 C -0.096 4.096 12 C -0.118 4.118 13 C -0.119 4.119 14 C -0.090 4.090 15 C -0.114 4.114 16 C -0.108 4.108 17 C 0.081 3.919 18 N -0.297 5.297 19 N -0.311 5.311 20 C 0.251 3.749 21 C -0.543 4.543 22 H 0.065 0.935 23 C 0.068 3.932 24 N -0.889 5.889 25 Si 0.909 3.091 26 H -0.273 1.273 27 H -0.283 1.283 28 H -0.273 1.273 29 H 0.079 0.921 30 H 0.095 0.905 31 H 0.086 0.914 32 H 0.067 0.933 33 H 0.068 0.932 34 H 0.072 0.928 35 H 0.130 0.870 36 H 0.123 0.877 37 H 0.120 0.880 38 H 0.070 0.930 39 H 0.065 0.935 40 H 0.066 0.934 41 H 0.123 0.877 42 H 0.184 0.816 43 H 0.058 0.942 44 H 0.059 0.941 45 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.780 24.043 4.588 24.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.034 3.966 3 C -0.332 4.332 4 C 0.400 3.600 5 O -0.421 6.421 6 O -0.265 6.265 7 C 0.074 3.926 8 H 0.110 0.890 9 C -0.220 4.220 10 C -0.082 4.082 11 C -0.114 4.114 12 C -0.136 4.136 13 C -0.137 4.137 14 C -0.090 4.090 15 C -0.170 4.170 16 C -0.126 4.126 17 C -0.107 4.107 18 N -0.117 5.117 19 N -0.087 5.087 20 C 0.134 3.866 21 C -0.581 4.581 22 H 0.084 0.916 23 C -0.136 4.136 24 N -0.526 5.526 25 Si 0.736 3.264 26 H -0.199 1.199 27 H -0.209 1.209 28 H -0.198 1.198 29 H 0.098 0.902 30 H 0.113 0.887 31 H 0.105 0.895 32 H 0.086 0.914 33 H 0.087 0.913 34 H 0.091 0.909 35 H 0.147 0.853 36 H 0.141 0.859 37 H 0.138 0.862 38 H 0.089 0.911 39 H 0.084 0.916 40 H 0.085 0.915 41 H 0.141 0.859 42 H 0.201 0.799 43 H 0.075 0.925 44 H 0.077 0.923 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 4.065 22.679 4.648 23.505 hybrid contribution -0.506 0.303 -0.918 1.091 sum 3.559 22.983 3.730 23.554 Atomic orbital electron populations 1.20664 0.86606 1.05084 1.03515 1.21453 0.94974 0.86422 0.93712 1.18833 0.93786 0.89284 1.31251 1.20054 0.83460 0.85002 0.71526 1.90741 1.17938 1.84394 1.48977 1.86610 1.39816 1.15166 1.84858 1.21312 0.96362 0.78056 0.96835 0.88992 1.22170 1.03103 1.01874 0.94832 1.19643 0.94308 0.96363 0.97897 1.21059 0.92321 0.98658 0.99347 1.21173 0.99753 0.95527 0.97194 1.21060 0.94892 0.98740 0.99017 1.19844 0.93471 0.97481 0.98225 1.20784 1.01468 0.96314 0.98453 1.20836 0.99608 0.95671 0.96514 1.23906 0.96631 0.92110 0.98023 1.77214 0.98281 1.12343 1.23813 1.49426 1.02610 1.08290 1.48336 1.19897 0.96521 0.70669 0.99551 1.21210 1.47850 0.98128 0.90915 0.91636 1.24929 0.94390 0.95948 0.98364 1.69905 1.44298 1.07168 1.31212 0.86366 0.78918 0.77758 0.83404 1.19855 1.20856 1.19827 0.90208 0.88661 0.89503 0.91439 0.91308 0.90907 0.85254 0.85852 0.86173 0.91142 0.91582 0.91534 0.85937 0.79902 0.92456 0.92297 0.92003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.76 9.34 36.01 0.34 -1.43 16 2 C 0.17 3.49 7.01 -81.59 -0.57 2.92 16 3 C -0.32 -6.01 6.13 -105.08 -0.64 -6.65 16 4 C 0.55 9.55 7.93 34.41 0.27 9.82 16 5 O -0.53 -9.70 14.10 -19.28 -0.27 -9.97 16 6 O -0.35 -5.15 9.05 -40.65 -0.37 -5.51 16 7 C 0.13 1.59 2.77 -27.88 -0.08 1.52 16 8 H 0.09 1.18 7.02 -51.93 -0.36 0.82 16 9 C -0.16 -1.74 9.53 37.16 0.35 -1.39 16 10 C -0.08 -0.91 4.98 -104.62 -0.52 -1.43 16 11 C -0.10 -1.02 9.36 -39.58 -0.37 -1.39 16 12 C -0.12 -1.09 10.05 -39.58 -0.40 -1.49 16 13 C -0.12 -1.03 9.70 -39.58 -0.38 -1.41 16 14 C -0.09 -0.80 5.88 -104.62 -0.62 -1.42 16 15 C -0.11 -0.72 10.01 36.01 0.36 -0.36 16 16 C -0.11 -1.07 9.33 -39.59 -0.37 -1.44 16 17 C 0.08 1.48 11.87 -16.97 -0.20 1.28 16 18 N -0.30 -6.48 12.50 30.87 0.39 -6.09 16 19 N -0.31 -7.00 3.56 -57.77 -0.21 -7.20 16 20 C 0.25 6.16 5.78 -5.20 -0.03 6.13 16 21 C -0.54 -14.44 9.39 -34.44 -0.32 -14.76 16 22 H 0.07 1.79 7.81 -52.49 -0.41 1.38 16 23 C 0.07 1.80 5.46 -17.82 -0.10 1.70 16 24 N -0.89 -24.31 13.29 55.43 0.74 -23.58 16 25 Si 0.91 20.62 29.54 -169.99 -5.02 15.60 16 26 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 27 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 28 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 29 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 30 H 0.09 1.61 6.51 -51.93 -0.34 1.28 16 31 H 0.09 1.57 7.69 -51.93 -0.40 1.17 16 32 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 33 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.13 1.34 7.77 -52.48 -0.41 0.93 16 36 H 0.12 0.88 8.06 -52.49 -0.42 0.46 16 37 H 0.12 0.78 8.06 -52.49 -0.42 0.36 16 38 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 39 H 0.07 0.34 8.09 -51.93 -0.42 -0.08 16 40 H 0.07 0.37 8.09 -51.93 -0.42 -0.05 16 41 H 0.12 1.04 8.04 -52.49 -0.42 0.62 16 42 H 0.18 2.66 8.06 -52.48 -0.42 2.23 16 43 H 0.06 1.39 7.62 -51.93 -0.40 0.99 16 44 H 0.06 1.54 8.14 -51.93 -0.42 1.12 16 45 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 LS Contribution 387.82 15.07 5.84 5.84 Total: -1.00 -29.84 387.82 -8.69 -38.53 By element: Atomic # 1 Polarization: 8.68 SS G_CDS: -6.52 Total: 2.17 kcal Atomic # 6 Polarization: -6.51 SS G_CDS: -3.28 Total: -9.79 kcal Atomic # 7 Polarization: -37.79 SS G_CDS: 0.92 Total: -36.87 kcal Atomic # 8 Polarization: -14.84 SS G_CDS: -0.64 Total: -15.48 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.02 Total: 15.60 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -29.84 -8.69 -38.53 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000889055126.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.002 kcal (2) G-P(sol) polarization free energy of solvation -29.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.162 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.695 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.535 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.533 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds