Wall clock time and date at job start Tue Mar 31 2020 14:57:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38123 * 126.29446 * 2 1 4 4 C 1.47290 * 126.42664 * 0.02562 * 3 2 1 5 5 O 1.21521 * 119.99913 * 0.02562 * 4 3 2 6 6 O 1.34760 * 119.99675 * 179.97438 * 4 3 2 7 7 C 1.45199 * 116.99442 * 180.02562 * 6 4 3 8 8 H 1.08996 * 109.47415 * 30.00137 * 7 6 4 9 9 C 1.53008 * 109.46941 * 269.99986 * 7 6 4 10 10 C 1.50696 * 109.47000 * 150.00424 * 7 6 4 11 11 C 1.38258 * 120.00089 * 39.71846 * 10 7 6 12 12 C 1.38219 * 120.00036 * 179.76580 * 11 10 7 13 13 C 1.38252 * 120.00027 * 0.51377 * 12 11 10 14 14 C 1.38222 * 119.99591 * 359.74508 * 13 12 11 15 15 C 1.50700 * 119.99744 * 179.97438 * 14 13 12 16 16 C 1.38216 * 120.00112 * 219.99923 * 10 7 6 17 17 C 1.41344 * 107.14503 * 180.02562 * 3 2 1 18 18 N 1.30431 * 108.01197 * 359.73408 * 17 3 2 19 19 N 1.34222 * 126.29232 * 180.02562 * 2 1 3 20 20 C 1.46491 * 125.74900 * 359.97341 * 19 2 1 21 21 C 1.50702 * 109.46957 * 90.00099 * 20 19 2 22 22 H 1.08002 * 120.00299 * 0.02562 * 21 20 19 23 23 C 1.37884 * 119.99942 * 179.72213 * 21 20 19 24 24 N 1.31514 * 119.99698 * 0.28408 * 23 21 20 25 25 Si 1.86794 * 119.99837 * 180.27476 * 23 21 20 26 26 H 1.48504 * 109.47196 * 60.00645 * 25 23 21 27 27 H 1.48504 * 109.46887 * 180.02562 * 25 23 21 28 28 H 1.48502 * 109.47679 * 300.00280 * 25 23 21 29 29 H 1.08993 * 109.46826 * 270.00042 * 1 2 3 30 30 H 1.09001 * 109.47180 * 30.00515 * 1 2 3 31 31 H 1.08998 * 109.46656 * 150.00205 * 1 2 3 32 32 H 1.09004 * 109.46920 * 300.00353 * 9 7 6 33 33 H 1.09000 * 109.46947 * 60.00314 * 9 7 6 34 34 H 1.09002 * 109.46467 * 180.02562 * 9 7 6 35 35 H 1.08005 * 120.00294 * 0.02562 * 11 10 7 36 36 H 1.07997 * 119.99651 * 180.23475 * 12 11 10 37 37 H 1.07994 * 120.00251 * 179.72205 * 13 12 11 38 38 H 1.09000 * 109.47260 * 270.02444 * 15 14 13 39 39 H 1.09007 * 109.47354 * 30.02237 * 15 14 13 40 40 H 1.08999 * 109.47204 * 150.02031 * 15 14 13 41 41 H 1.07993 * 119.99494 * 359.97438 * 16 10 7 42 42 H 1.08003 * 125.99161 * 180.02562 * 17 3 2 43 43 H 1.09004 * 109.47166 * 330.00365 * 20 19 2 44 44 H 1.08994 * 109.47507 * 210.00071 * 20 19 2 45 45 H 0.97005 * 119.99651 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3247 1.1133 0.0000 4 6 1.8872 2.5197 0.0005 5 8 0.7018 2.7873 0.0015 6 8 2.8015 3.5097 0.0010 7 6 2.2982 4.8716 0.0021 8 1 1.3376 4.9036 0.5162 9 6 2.1210 5.3510 -1.4401 10 6 3.2785 5.7688 0.7127 11 6 4.6372 5.5910 0.5289 12 6 5.5362 6.4170 1.1770 13 6 5.0770 7.4142 2.0173 14 6 3.7188 7.5885 2.2052 15 6 3.2182 8.6751 3.1216 16 6 2.8194 6.7657 1.5529 17 6 3.6599 0.6496 -0.0006 18 7 3.6340 -0.6544 0.0048 19 7 2.3015 -1.0818 -0.0005 20 6 1.8499 -2.4754 -0.0006 21 6 1.6945 -2.9530 -1.4214 22 1 1.9110 -2.2853 -2.2423 23 6 1.2819 -4.2443 -1.6735 24 7 1.0187 -5.0574 -0.6739 25 14 1.0967 -4.8386 -3.4346 26 1 2.4043 -4.7374 -4.1313 27 1 0.6435 -6.2528 -3.4347 28 1 0.0947 -3.9981 -4.1381 29 1 -0.3633 0.0000 1.0276 30 1 -0.3633 0.8899 -0.5139 31 1 -0.3632 -0.8900 -0.5138 32 1 3.0817 5.3190 -1.9542 33 1 1.4120 4.7021 -1.9542 34 1 1.7436 6.3736 -1.4392 35 1 4.9961 4.8094 -0.1243 36 1 6.5974 6.2805 1.0304 37 1 5.7795 8.0567 2.5272 38 1 3.1233 8.2817 4.1337 39 1 3.9239 9.5059 3.1195 40 1 2.2456 9.0237 2.7745 41 1 1.7582 6.9019 1.6996 42 1 4.5461 1.2669 -0.0004 43 1 0.8913 -2.5467 0.5136 44 1 2.5846 -3.0955 0.5129 45 1 0.7281 -5.9657 -0.8512 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000889055126.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:57:27 Heat of formation + Delta-G solvation = -20.843374 kcal Electronic energy + Delta-G solvation = -26836.736481 eV Core-core repulsion = 23012.572352 eV Total energy + Delta-G solvation = -3824.164130 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.44554 -41.25868 -40.11353 -37.54294 -35.84875 -34.47269 -33.86250 -33.10875 -32.79527 -30.44756 -29.37219 -28.35877 -27.71886 -25.76542 -25.04790 -23.71820 -22.98039 -21.98212 -20.90534 -20.50444 -18.93398 -18.72618 -17.88589 -17.28218 -17.01269 -16.85047 -16.35238 -16.04982 -15.96809 -15.72652 -15.09970 -14.86248 -14.60158 -14.39577 -14.33849 -14.09227 -13.96882 -13.88395 -13.69338 -13.63104 -13.22515 -13.14680 -13.02243 -13.00085 -12.75775 -12.70979 -12.51538 -12.31539 -12.09269 -11.89889 -11.86472 -11.73443 -11.54498 -11.26528 -10.76523 -10.33408 -9.75858 -9.67420 -9.50888 -8.38785 -6.55163 0.33388 0.42886 0.48618 1.17604 1.38071 1.39348 1.43261 1.50448 1.91456 2.23341 2.32364 2.83393 2.93756 3.53728 3.65765 3.73139 3.91393 3.92261 4.04380 4.10570 4.15885 4.19653 4.29305 4.47462 4.52000 4.57735 4.62152 4.67074 4.75470 4.77483 4.84955 4.86766 4.90995 4.97307 5.02196 5.09364 5.11542 5.14643 5.33004 5.39961 5.47728 5.57089 5.60404 5.68786 5.71028 5.72819 5.96219 6.11053 6.52795 6.71439 6.89616 7.15926 8.69014 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.025985 B = 0.002287 C = 0.002253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1077.283484 B =12240.987976 C =12422.970002 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C 0.161 3.839 3 C -0.322 4.322 4 C 0.558 3.442 5 O -0.541 6.541 6 O -0.344 6.344 7 C 0.127 3.873 8 H 0.085 0.915 9 C -0.158 4.158 10 C -0.097 4.097 11 C -0.112 4.112 12 C -0.122 4.122 13 C -0.122 4.122 14 C -0.095 4.095 15 C -0.113 4.113 16 C -0.119 4.119 17 C 0.097 3.903 18 N -0.335 5.335 19 N -0.333 5.333 20 C 0.266 3.734 21 C -0.558 4.558 22 H 0.053 0.947 23 C 0.025 3.975 24 N -0.915 5.915 25 Si 0.971 3.029 26 H -0.274 1.274 27 H -0.273 1.273 28 H -0.266 1.266 29 H 0.098 0.902 30 H 0.102 0.898 31 H 0.076 0.924 32 H 0.071 0.929 33 H 0.054 0.946 34 H 0.092 0.908 35 H 0.127 0.873 36 H 0.142 0.858 37 H 0.144 0.856 38 H 0.075 0.925 39 H 0.079 0.921 40 H 0.072 0.928 41 H 0.131 0.869 42 H 0.222 0.778 43 H 0.055 0.945 44 H 0.034 0.966 45 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.244 26.259 4.431 26.966 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.025 3.975 3 C -0.335 4.335 4 C 0.406 3.594 5 O -0.433 6.433 6 O -0.261 6.261 7 C 0.073 3.927 8 H 0.103 0.897 9 C -0.215 4.215 10 C -0.097 4.097 11 C -0.130 4.130 12 C -0.140 4.140 13 C -0.140 4.140 14 C -0.095 4.095 15 C -0.169 4.169 16 C -0.137 4.137 17 C -0.090 4.090 18 N -0.154 5.154 19 N -0.109 5.109 20 C 0.148 3.852 21 C -0.596 4.596 22 H 0.071 0.929 23 C -0.177 4.177 24 N -0.553 5.553 25 Si 0.794 3.206 26 H -0.199 1.199 27 H -0.198 1.198 28 H -0.190 1.190 29 H 0.116 0.884 30 H 0.120 0.880 31 H 0.095 0.905 32 H 0.090 0.910 33 H 0.073 0.927 34 H 0.111 0.889 35 H 0.145 0.855 36 H 0.160 0.840 37 H 0.161 0.839 38 H 0.093 0.907 39 H 0.098 0.902 40 H 0.091 0.909 41 H 0.149 0.851 42 H 0.238 0.762 43 H 0.073 0.927 44 H 0.052 0.948 45 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 4.532 24.925 4.499 25.730 hybrid contribution -0.589 -0.202 -0.797 1.011 sum 3.944 24.723 3.701 25.308 Atomic orbital electron populations 1.20688 0.85109 1.04802 1.04610 1.21960 0.96117 0.86276 0.93194 1.19057 0.93854 0.90014 1.30571 1.19762 0.83460 0.84919 0.71285 1.90731 1.18478 1.84631 1.49469 1.86585 1.39186 1.16039 1.84250 1.21534 0.96478 0.76725 0.97990 0.89720 1.22151 1.03073 1.02636 0.93644 1.19614 0.94289 0.96884 0.98928 1.21153 0.92457 0.99319 1.00080 1.21437 1.00582 0.95212 0.96798 1.21410 0.95344 0.98643 0.98574 1.20191 0.93603 0.97662 0.98048 1.20834 1.02151 0.95921 0.98020 1.21027 1.00462 0.95716 0.96497 1.24508 0.97774 0.91256 0.95457 1.77167 0.98261 1.14107 1.25850 1.49186 1.03346 1.07904 1.50497 1.19452 0.95548 0.71879 0.98332 1.21356 1.48279 0.98462 0.91475 0.92906 1.25720 0.93800 0.95905 1.02259 1.69986 1.44654 1.07555 1.33067 0.85410 0.78823 0.77689 0.78639 1.19924 1.19795 1.19049 0.88401 0.87990 0.90495 0.90971 0.92658 0.88897 0.85535 0.83992 0.83858 0.90652 0.90172 0.90895 0.85072 0.76199 0.92681 0.94795 0.91607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -3.30 9.34 71.24 0.67 -2.64 16 2 C 0.16 6.57 7.01 42.17 0.30 6.87 16 3 C -0.32 -12.00 6.13 -20.16 -0.12 -12.12 16 4 C 0.56 18.88 7.93 70.20 0.56 19.44 16 5 O -0.54 -19.44 14.10 19.77 0.28 -19.16 16 6 O -0.34 -9.85 9.05 -56.70 -0.51 -10.36 16 7 C 0.13 3.01 2.77 29.85 0.08 3.10 16 8 H 0.08 2.12 7.02 -2.39 -0.02 2.11 16 9 C -0.16 -3.21 9.53 71.98 0.69 -2.52 16 10 C -0.10 -2.05 4.98 -19.87 -0.10 -2.14 16 11 C -0.11 -2.23 9.36 22.27 0.21 -2.02 16 12 C -0.12 -2.00 10.05 22.27 0.22 -1.77 16 13 C -0.12 -1.80 9.70 22.27 0.22 -1.58 16 14 C -0.10 -1.48 5.88 -19.87 -0.12 -1.60 16 15 C -0.11 -1.13 10.01 71.24 0.71 -0.42 16 16 C -0.12 -2.18 9.33 22.27 0.21 -1.97 16 17 C 0.10 3.50 11.87 85.67 1.02 4.52 16 18 N -0.33 -14.74 12.50 -56.24 -0.70 -15.45 16 19 N -0.33 -15.35 3.56 -336.67 -1.20 -16.55 16 20 C 0.27 13.56 5.78 85.64 0.50 14.05 16 21 C -0.56 -30.34 9.39 25.60 0.24 -30.10 16 22 H 0.05 2.95 7.81 -2.91 -0.02 2.93 16 23 C 0.02 1.33 5.46 84.66 0.46 1.79 16 24 N -0.91 -50.61 13.29 21.45 0.28 -50.33 16 25 Si 0.97 42.22 29.54 68.60 2.03 44.25 16 26 H -0.27 -11.88 7.11 99.48 0.71 -11.18 16 27 H -0.27 -11.36 7.11 99.48 0.71 -10.66 16 28 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16 29 H 0.10 3.04 8.14 -2.39 -0.02 3.02 16 30 H 0.10 3.42 6.51 -2.39 -0.02 3.40 16 31 H 0.08 2.84 7.69 -2.39 -0.02 2.82 16 32 H 0.07 1.38 8.14 -2.38 -0.02 1.37 16 33 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 34 H 0.09 1.49 8.14 -2.39 -0.02 1.47 16 35 H 0.13 2.49 7.77 -2.91 -0.02 2.46 16 36 H 0.14 1.69 8.06 -2.91 -0.02 1.66 16 37 H 0.14 1.39 8.06 -2.91 -0.02 1.36 16 38 H 0.07 0.70 8.14 -2.39 -0.02 0.69 16 39 H 0.08 0.58 8.09 -2.38 -0.02 0.56 16 40 H 0.07 0.64 8.09 -2.39 -0.02 0.62 16 41 H 0.13 2.05 8.04 -2.91 -0.02 2.03 16 42 H 0.22 5.95 8.06 -2.91 -0.02 5.93 16 43 H 0.06 2.78 7.62 -2.38 -0.02 2.76 16 44 H 0.03 1.87 8.14 -2.39 -0.02 1.85 16 45 H 0.27 14.25 8.31 -92.70 -0.77 13.48 16 Total: -1.00 -64.16 387.82 6.89 -57.27 By element: Atomic # 1 Polarization: 18.46 SS G_CDS: 0.99 Total: 19.45 kcal Atomic # 6 Polarization: -14.85 SS G_CDS: 5.73 Total: -9.12 kcal Atomic # 7 Polarization: -80.71 SS G_CDS: -1.62 Total: -82.33 kcal Atomic # 8 Polarization: -29.29 SS G_CDS: -0.23 Total: -29.52 kcal Atomic # 14 Polarization: 42.22 SS G_CDS: 2.03 Total: 44.25 kcal Total: -64.16 6.89 -57.27 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000889055126.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.424 kcal (2) G-P(sol) polarization free energy of solvation -64.160 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.736 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.267 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds