Wall clock time and date at job start Tue Mar 31 2020 14:56:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38126 * 126.29428 * 2 1 4 4 C 1.47283 * 126.42510 * 0.02562 * 3 2 1 5 5 O 1.21525 * 120.00548 * 0.02562 * 4 3 2 6 6 O 1.34762 * 119.99904 * 180.02562 * 4 3 2 7 7 C 1.45200 * 116.99812 * 180.02562 * 6 4 3 8 8 C 1.50703 * 109.46544 * 179.97438 * 7 6 4 9 9 C 1.38256 * 120.00325 * 0.02562 * 8 7 6 10 10 C 1.38211 * 120.00062 * 180.27920 * 9 8 7 11 11 C 1.38259 * 119.99788 * 359.45940 * 10 9 8 12 12 C 1.50699 * 120.00213 * 180.28358 * 11 10 9 13 13 C 1.38212 * 120.00042 * 0.55987 * 11 10 9 14 14 C 1.38214 * 119.99514 * 180.02562 * 8 7 6 15 15 C 1.50701 * 120.00231 * 0.02562 * 14 8 7 16 16 C 1.41344 * 107.14337 * 180.28665 * 3 2 1 17 17 N 1.30431 * 108.01293 * 359.55273 * 16 3 2 18 18 N 1.34226 * 126.29522 * 180.02562 * 2 1 3 19 19 C 1.46494 * 125.74368 * 359.94847 * 18 2 1 20 20 C 1.50692 * 109.47581 * 89.99865 * 19 18 2 21 21 H 1.08008 * 119.99994 * 359.97438 * 20 19 18 22 22 C 1.37878 * 120.00062 * 180.02562 * 20 19 18 23 23 N 1.31510 * 120.00104 * 359.97438 * 22 20 19 24 24 Si 1.86808 * 119.99987 * 179.97438 * 22 20 19 25 25 H 1.48502 * 109.46769 * 59.99476 * 24 22 20 26 26 H 1.48494 * 109.47101 * 179.97438 * 24 22 20 27 27 H 1.48500 * 109.46756 * 300.00005 * 24 22 20 28 28 H 1.08995 * 109.47300 * 89.98219 * 1 2 3 29 29 H 1.09001 * 109.46750 * 209.97939 * 1 2 3 30 30 H 1.08996 * 109.47236 * 329.97175 * 1 2 3 31 31 H 1.09000 * 109.47262 * 60.00140 * 7 6 4 32 32 H 1.08992 * 109.47086 * 299.99957 * 7 6 4 33 33 H 1.08002 * 119.99676 * 359.97438 * 9 8 7 34 34 H 1.07998 * 120.00348 * 179.72205 * 10 9 8 35 35 H 1.08998 * 109.46800 * 270.28143 * 12 11 10 36 36 H 1.09007 * 109.47085 * 30.27480 * 12 11 10 37 37 H 1.08997 * 109.47544 * 150.28187 * 12 11 10 38 38 H 1.08001 * 120.00342 * 179.72710 * 13 11 10 39 39 H 1.08998 * 109.46845 * 89.99850 * 15 14 8 40 40 H 1.08997 * 109.46777 * 209.99863 * 15 14 8 41 41 H 1.08999 * 109.46887 * 329.99904 * 15 14 8 42 42 H 1.08004 * 125.99158 * 179.73777 * 16 3 2 43 43 H 1.09007 * 109.47098 * 209.99750 * 19 18 2 44 44 H 1.09004 * 109.47102 * 329.99338 * 19 18 2 45 45 H 0.97002 * 119.99884 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3246 1.1133 0.0000 4 6 1.8871 2.5196 0.0005 5 8 0.7017 2.7873 0.0015 6 8 2.8014 3.5097 -0.0001 7 6 2.2981 4.8717 0.0011 8 6 3.4568 5.8353 0.0009 9 6 4.7539 5.3567 -0.0009 10 6 5.8165 6.2405 0.0047 11 6 5.5824 7.6031 0.0008 12 6 6.7410 8.5668 0.0005 13 6 4.2857 8.0815 0.0029 14 6 3.2227 7.1974 0.0024 15 6 1.8088 7.7190 0.0048 16 6 3.6598 0.6496 -0.0068 17 7 3.6340 -0.6544 -0.0008 18 7 2.3016 -1.0818 -0.0005 19 6 1.8498 -2.4754 0.0000 20 6 1.6938 -2.9534 -1.4206 21 1 1.9092 -2.2858 -2.2418 22 6 1.2751 -4.2428 -1.6720 23 7 1.0124 -5.0556 -0.6721 24 14 1.0811 -4.8352 -3.4330 25 1 2.3864 -4.7385 -4.1344 26 1 0.6233 -6.2478 -3.4325 27 1 0.0798 -3.9900 -4.1320 28 1 -0.3633 0.0003 -1.0276 29 1 -0.3633 -0.8902 0.5135 30 1 -0.3633 0.8897 0.5142 31 1 1.6912 5.0340 0.8918 32 1 1.6892 5.0347 -0.8881 33 1 4.9367 4.2923 -0.0016 34 1 6.8298 5.8667 0.0079 35 1 7.0216 8.7978 1.0280 36 1 7.5889 8.1154 -0.5149 37 1 6.4506 9.4840 -0.5119 38 1 4.1028 9.1459 0.0043 39 1 1.4695 7.8439 1.0331 40 1 1.7753 8.6802 -0.5081 41 1 1.1592 7.0103 -0.5087 42 1 4.5461 1.2669 -0.0125 43 1 2.5848 -3.0954 0.5133 44 1 0.8916 -2.5465 0.5146 45 1 0.7181 -5.9628 -0.8491 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000890005460.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:56:13 Heat of formation + Delta-G solvation = -10.115401 kcal Electronic energy + Delta-G solvation = -26557.884690 eV Core-core repulsion = 22734.185760 eV Total energy + Delta-G solvation = -3823.698930 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.92261 -40.12579 -39.27629 -36.21050 -34.16491 -33.92156 -32.29753 -32.13892 -31.28077 -29.18628 -27.62561 -27.31487 -26.75472 -24.89426 -23.58697 -22.70631 -21.87789 -20.34310 -20.23416 -18.94515 -17.42183 -16.82063 -16.79338 -16.28891 -15.86196 -15.38777 -15.04471 -14.82014 -14.66698 -14.49168 -14.23408 -13.62824 -13.59457 -13.34838 -13.15104 -13.05389 -12.91918 -12.75585 -12.50438 -12.31087 -12.21941 -12.16102 -11.85491 -11.75360 -11.56230 -11.17307 -11.15485 -11.05857 -10.89566 -10.67207 -10.44332 -10.32245 -9.99549 -9.83701 -8.92015 -8.73570 -8.66955 -8.60966 -8.09138 -6.36596 -4.44809 1.08972 1.22480 1.89700 2.68860 2.76637 3.18454 3.22655 3.25254 3.38988 3.49951 3.65576 4.21887 4.47823 4.52366 4.72118 4.77175 4.97324 5.00683 5.04602 5.11467 5.14856 5.20416 5.22488 5.29530 5.33016 5.39773 5.45616 5.53193 5.60895 5.62632 5.67955 5.88785 5.91832 6.00064 6.02745 6.19539 6.33957 6.35210 6.40997 6.47550 6.70480 6.77623 6.82732 6.85953 7.11232 7.50356 7.69624 7.73277 8.15164 8.32805 8.60034 9.22257 10.71570 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.022599 B = 0.002223 C = 0.002137 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1238.691320 B =12590.895817 C =13098.565527 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C 0.173 3.827 3 C -0.319 4.319 4 C 0.553 3.447 5 O -0.530 6.530 6 O -0.353 6.353 7 C 0.114 3.886 8 C -0.096 4.096 9 C -0.088 4.088 10 C -0.126 4.126 11 C -0.086 4.086 12 C -0.114 4.114 13 C -0.122 4.122 14 C -0.076 4.076 15 C -0.121 4.121 16 C 0.081 3.919 17 N -0.297 5.297 18 N -0.310 5.310 19 C 0.251 3.749 20 C -0.542 4.542 21 H 0.065 0.935 22 C 0.068 3.932 23 N -0.889 5.889 24 Si 0.909 3.091 25 H -0.273 1.273 26 H -0.283 1.283 27 H -0.273 1.273 28 H 0.086 0.914 29 H 0.077 0.923 30 H 0.093 0.907 31 H 0.081 0.919 32 H 0.081 0.919 33 H 0.136 0.864 34 H 0.123 0.877 35 H 0.069 0.931 36 H 0.066 0.934 37 H 0.064 0.936 38 H 0.122 0.878 39 H 0.073 0.927 40 H 0.068 0.932 41 H 0.069 0.931 42 H 0.184 0.816 43 H 0.059 0.941 44 H 0.058 0.942 45 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.897 24.505 2.769 25.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.034 3.966 3 C -0.332 4.332 4 C 0.400 3.600 5 O -0.420 6.420 6 O -0.270 6.270 7 C 0.040 3.960 8 C -0.096 4.096 9 C -0.106 4.106 10 C -0.144 4.144 11 C -0.086 4.086 12 C -0.170 4.170 13 C -0.140 4.140 14 C -0.076 4.076 15 C -0.178 4.178 16 C -0.107 4.107 17 N -0.116 5.116 18 N -0.086 5.086 19 C 0.134 3.866 20 C -0.580 4.580 21 H 0.083 0.917 22 C -0.136 4.136 23 N -0.526 5.526 24 Si 0.736 3.264 25 H -0.199 1.199 26 H -0.208 1.208 27 H -0.198 1.198 28 H 0.105 0.895 29 H 0.095 0.905 30 H 0.111 0.889 31 H 0.099 0.901 32 H 0.099 0.901 33 H 0.154 0.846 34 H 0.141 0.859 35 H 0.088 0.912 36 H 0.085 0.915 37 H 0.083 0.917 38 H 0.140 0.860 39 H 0.092 0.908 40 H 0.087 0.913 41 H 0.088 0.912 42 H 0.201 0.799 43 H 0.077 0.923 44 H 0.076 0.924 45 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 5.183 23.142 2.831 23.884 hybrid contribution -0.555 0.336 -0.953 1.153 sum 4.628 23.479 1.878 24.004 Atomic orbital electron populations 1.20622 0.86545 1.04029 1.04193 1.21455 0.94982 0.86442 0.93673 1.18803 0.93790 0.89196 1.31404 1.20028 0.83320 0.84869 0.71751 1.90760 1.17948 1.84527 1.48792 1.86485 1.39910 1.15407 1.85234 1.21582 0.93989 0.77610 1.02792 1.19479 0.94453 0.92644 1.03042 1.21074 0.91422 1.00746 0.97372 1.21063 0.99164 0.92552 1.01616 1.19935 0.94767 0.94488 0.99414 1.20787 0.96011 0.97979 1.02271 1.20799 0.91530 0.99088 1.02559 1.19570 0.96023 0.92038 0.99941 1.20866 0.92611 1.01619 1.02655 1.23904 0.96597 0.92133 0.98045 1.77217 0.98264 1.12330 1.23777 1.49426 1.02609 1.08306 1.48267 1.19905 0.96527 0.70630 0.99575 1.21194 1.47717 0.98225 0.90893 0.91657 1.24922 0.94378 0.95955 0.98361 1.69899 1.44274 1.07240 1.31201 0.86366 0.78918 0.77760 0.83406 1.19857 1.20848 1.19835 0.89501 0.90453 0.88863 0.90092 0.90053 0.84607 0.85926 0.91219 0.91501 0.91666 0.86035 0.90825 0.91305 0.91201 0.79884 0.92293 0.92437 0.92001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.67 9.57 36.01 0.34 -1.32 16 2 C 0.17 3.46 7.01 -81.59 -0.57 2.89 16 3 C -0.32 -5.93 6.13 -105.08 -0.64 -6.58 16 4 C 0.55 9.43 7.95 34.41 0.27 9.71 16 5 O -0.53 -9.64 14.63 -19.29 -0.28 -9.92 16 6 O -0.35 -5.14 8.54 -40.66 -0.35 -5.48 16 7 C 0.11 1.38 4.58 36.01 0.16 1.55 16 8 C -0.10 -1.08 5.88 -104.62 -0.62 -1.69 16 9 C -0.09 -0.98 9.38 -39.58 -0.37 -1.36 16 10 C -0.13 -1.23 9.70 -39.58 -0.38 -1.61 16 11 C -0.09 -0.77 5.88 -104.62 -0.62 -1.38 16 12 C -0.11 -0.72 10.01 36.01 0.36 -0.35 16 13 C -0.12 -1.09 9.36 -39.58 -0.37 -1.46 16 14 C -0.08 -0.74 5.88 -104.62 -0.62 -1.35 16 15 C -0.12 -0.91 9.60 36.01 0.35 -0.56 16 16 C 0.08 1.46 11.87 -16.97 -0.20 1.26 16 17 N -0.30 -6.40 12.50 30.87 0.39 -6.02 16 18 N -0.31 -6.93 3.56 -57.76 -0.21 -7.14 16 19 C 0.25 6.13 5.96 -5.20 -0.03 6.10 16 20 C -0.54 -14.41 9.39 -34.44 -0.32 -14.73 16 21 H 0.07 1.78 7.81 -52.48 -0.41 1.37 16 22 C 0.07 1.80 5.46 -17.82 -0.10 1.70 16 23 N -0.89 -24.29 13.29 55.43 0.74 -23.55 16 24 Si 0.91 20.62 29.54 -169.99 -5.02 15.60 16 25 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 26 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 27 H -0.27 -6.11 7.11 56.52 0.40 -5.70 16 28 H 0.09 1.48 8.14 -51.93 -0.42 1.06 16 29 H 0.08 1.30 7.05 -51.93 -0.37 0.94 16 30 H 0.09 1.52 6.50 -51.93 -0.34 1.18 16 31 H 0.08 0.94 8.13 -51.93 -0.42 0.52 16 32 H 0.08 0.96 7.49 -51.93 -0.39 0.57 16 33 H 0.14 1.51 6.99 -52.49 -0.37 1.15 16 34 H 0.12 0.97 8.06 -52.49 -0.42 0.55 16 35 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 36 H 0.07 0.38 8.09 -51.93 -0.42 -0.04 16 37 H 0.06 0.35 8.09 -51.93 -0.42 -0.07 16 38 H 0.12 0.83 8.06 -52.49 -0.42 0.41 16 39 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.07 0.42 8.09 -51.93 -0.42 0.00 16 41 H 0.07 0.53 6.64 -51.93 -0.34 0.19 16 42 H 0.18 2.58 8.06 -52.48 -0.42 2.15 16 43 H 0.06 1.53 8.14 -51.93 -0.42 1.11 16 44 H 0.06 1.39 7.01 -51.93 -0.36 1.02 16 45 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 LS Contribution 383.92 15.07 5.79 5.79 Total: -1.00 -29.89 383.92 -8.65 -38.55 By element: Atomic # 1 Polarization: 7.73 SS G_CDS: -6.36 Total: 1.37 kcal Atomic # 6 Polarization: -5.84 SS G_CDS: -3.35 Total: -9.19 kcal Atomic # 7 Polarization: -37.62 SS G_CDS: 0.92 Total: -36.71 kcal Atomic # 8 Polarization: -14.77 SS G_CDS: -0.63 Total: -15.40 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.02 Total: 15.60 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -29.89 -8.65 -38.55 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000890005460.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.433 kcal (2) G-P(sol) polarization free energy of solvation -29.895 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.462 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.654 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.548 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.115 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds