Wall clock time and date at job start Tue Mar 31 2020 14:56:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38126 * 126.29428 * 2 1 4 4 C 1.47283 * 126.42510 * 0.02562 * 3 2 1 5 5 O 1.21525 * 120.00548 * 0.02562 * 4 3 2 6 6 O 1.34762 * 119.99904 * 180.02562 * 4 3 2 7 7 C 1.45200 * 116.99812 * 180.02562 * 6 4 3 8 8 C 1.50703 * 109.46544 * 179.97438 * 7 6 4 9 9 C 1.38256 * 120.00325 * 0.02562 * 8 7 6 10 10 C 1.38211 * 120.00062 * 180.27920 * 9 8 7 11 11 C 1.38259 * 119.99788 * 359.45940 * 10 9 8 12 12 C 1.50699 * 120.00213 * 180.28358 * 11 10 9 13 13 C 1.38212 * 120.00042 * 0.55987 * 11 10 9 14 14 C 1.38214 * 119.99514 * 180.02562 * 8 7 6 15 15 C 1.50701 * 120.00231 * 0.02562 * 14 8 7 16 16 C 1.41344 * 107.14337 * 180.28665 * 3 2 1 17 17 N 1.30431 * 108.01293 * 359.55273 * 16 3 2 18 18 N 1.34226 * 126.29522 * 180.02562 * 2 1 3 19 19 C 1.46494 * 125.74368 * 359.94847 * 18 2 1 20 20 C 1.50692 * 109.47581 * 89.99865 * 19 18 2 21 21 H 1.08008 * 119.99994 * 359.97438 * 20 19 18 22 22 C 1.37878 * 120.00062 * 180.02562 * 20 19 18 23 23 N 1.31510 * 120.00104 * 359.97438 * 22 20 19 24 24 Si 1.86808 * 119.99987 * 179.97438 * 22 20 19 25 25 H 1.48502 * 109.46769 * 59.99476 * 24 22 20 26 26 H 1.48494 * 109.47101 * 179.97438 * 24 22 20 27 27 H 1.48500 * 109.46756 * 300.00005 * 24 22 20 28 28 H 1.08995 * 109.47300 * 89.98219 * 1 2 3 29 29 H 1.09001 * 109.46750 * 209.97939 * 1 2 3 30 30 H 1.08996 * 109.47236 * 329.97175 * 1 2 3 31 31 H 1.09000 * 109.47262 * 60.00140 * 7 6 4 32 32 H 1.08992 * 109.47086 * 299.99957 * 7 6 4 33 33 H 1.08002 * 119.99676 * 359.97438 * 9 8 7 34 34 H 1.07998 * 120.00348 * 179.72205 * 10 9 8 35 35 H 1.08998 * 109.46800 * 270.28143 * 12 11 10 36 36 H 1.09007 * 109.47085 * 30.27480 * 12 11 10 37 37 H 1.08997 * 109.47544 * 150.28187 * 12 11 10 38 38 H 1.08001 * 120.00342 * 179.72710 * 13 11 10 39 39 H 1.08998 * 109.46845 * 89.99850 * 15 14 8 40 40 H 1.08997 * 109.46777 * 209.99863 * 15 14 8 41 41 H 1.08999 * 109.46887 * 329.99904 * 15 14 8 42 42 H 1.08004 * 125.99158 * 179.73777 * 16 3 2 43 43 H 1.09007 * 109.47098 * 209.99750 * 19 18 2 44 44 H 1.09004 * 109.47102 * 329.99338 * 19 18 2 45 45 H 0.97002 * 119.99884 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3246 1.1133 0.0000 4 6 1.8871 2.5196 0.0005 5 8 0.7017 2.7873 0.0015 6 8 2.8014 3.5097 -0.0001 7 6 2.2981 4.8717 0.0011 8 6 3.4568 5.8353 0.0009 9 6 4.7539 5.3567 -0.0009 10 6 5.8165 6.2405 0.0047 11 6 5.5824 7.6031 0.0008 12 6 6.7410 8.5668 0.0005 13 6 4.2857 8.0815 0.0029 14 6 3.2227 7.1974 0.0024 15 6 1.8088 7.7190 0.0048 16 6 3.6598 0.6496 -0.0068 17 7 3.6340 -0.6544 -0.0008 18 7 2.3016 -1.0818 -0.0005 19 6 1.8498 -2.4754 0.0000 20 6 1.6938 -2.9534 -1.4206 21 1 1.9092 -2.2858 -2.2418 22 6 1.2751 -4.2428 -1.6720 23 7 1.0124 -5.0556 -0.6721 24 14 1.0811 -4.8352 -3.4330 25 1 2.3864 -4.7385 -4.1344 26 1 0.6233 -6.2478 -3.4325 27 1 0.0798 -3.9900 -4.1320 28 1 -0.3633 0.0003 -1.0276 29 1 -0.3633 -0.8902 0.5135 30 1 -0.3633 0.8897 0.5142 31 1 1.6912 5.0340 0.8918 32 1 1.6892 5.0347 -0.8881 33 1 4.9367 4.2923 -0.0016 34 1 6.8298 5.8667 0.0079 35 1 7.0216 8.7978 1.0280 36 1 7.5889 8.1154 -0.5149 37 1 6.4506 9.4840 -0.5119 38 1 4.1028 9.1459 0.0043 39 1 1.4695 7.8439 1.0331 40 1 1.7753 8.6802 -0.5081 41 1 1.1592 7.0103 -0.5087 42 1 4.5461 1.2669 -0.0125 43 1 2.5848 -3.0954 0.5133 44 1 0.8916 -2.5465 0.5146 45 1 0.7181 -5.9628 -0.8491 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000890005460.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:56:12 Heat of formation + Delta-G solvation = -23.505572 kcal Electronic energy + Delta-G solvation = -26558.465331 eV Core-core repulsion = 22734.185760 eV Total energy + Delta-G solvation = -3824.279571 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.44493 -41.18520 -40.28493 -37.45206 -35.84374 -34.85991 -33.91003 -33.02209 -32.83635 -30.14745 -29.14669 -28.32137 -27.98520 -25.87479 -25.26710 -23.94799 -22.88117 -21.66792 -21.06414 -20.47574 -18.93131 -18.70159 -17.88480 -17.48410 -17.11189 -16.51773 -16.25854 -16.18923 -16.00562 -15.56002 -15.18213 -15.09021 -14.44541 -14.42648 -14.20593 -14.13937 -13.96237 -13.84026 -13.73296 -13.60817 -13.47249 -13.18290 -13.15281 -13.01256 -12.79784 -12.69592 -12.47771 -12.31540 -11.90275 -11.89307 -11.84673 -11.77757 -11.73703 -11.31491 -10.76237 -10.34263 -9.68265 -9.63890 -9.33671 -8.38617 -6.54811 0.35351 0.41378 0.49399 1.17260 1.37447 1.39182 1.40618 1.49533 1.87644 2.22171 2.32400 2.77224 2.94055 3.61533 3.65360 3.76059 3.89555 3.94316 4.05535 4.09605 4.15992 4.24711 4.27664 4.45234 4.46194 4.56643 4.61874 4.68902 4.76118 4.80538 4.86408 4.87759 4.92510 4.95108 4.96240 5.09335 5.10559 5.28053 5.29650 5.36403 5.47898 5.56379 5.61968 5.69270 5.73061 5.73068 5.95713 6.12519 6.52840 6.70917 6.87042 7.16180 8.69194 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.022599 B = 0.002223 C = 0.002137 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1238.691320 B =12590.895817 C =13098.565527 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C 0.161 3.839 3 C -0.321 4.321 4 C 0.560 3.440 5 O -0.541 6.541 6 O -0.348 6.348 7 C 0.115 3.885 8 C -0.116 4.116 9 C -0.106 4.106 10 C -0.136 4.136 11 C -0.089 4.089 12 C -0.113 4.113 13 C -0.127 4.127 14 C -0.080 4.080 15 C -0.121 4.121 16 C 0.098 3.902 17 N -0.335 5.335 18 N -0.333 5.333 19 C 0.266 3.734 20 C -0.557 4.557 21 H 0.053 0.947 22 C 0.025 3.975 23 N -0.915 5.915 24 Si 0.970 3.030 25 H -0.274 1.274 26 H -0.273 1.273 27 H -0.266 1.266 28 H 0.089 0.911 29 H 0.078 0.922 30 H 0.105 0.895 31 H 0.085 0.915 32 H 0.084 0.916 33 H 0.129 0.871 34 H 0.136 0.864 35 H 0.078 0.922 36 H 0.072 0.928 37 H 0.077 0.923 38 H 0.145 0.855 39 H 0.081 0.919 40 H 0.085 0.915 41 H 0.065 0.935 42 H 0.223 0.777 43 H 0.034 0.966 44 H 0.056 0.944 45 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.219 26.875 2.086 27.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.024 3.976 3 C -0.335 4.335 4 C 0.407 3.593 5 O -0.433 6.433 6 O -0.265 6.265 7 C 0.041 3.959 8 C -0.116 4.116 9 C -0.124 4.124 10 C -0.154 4.154 11 C -0.089 4.089 12 C -0.169 4.169 13 C -0.145 4.145 14 C -0.081 4.081 15 C -0.177 4.177 16 C -0.090 4.090 17 N -0.154 5.154 18 N -0.109 5.109 19 C 0.147 3.853 20 C -0.595 4.595 21 H 0.071 0.929 22 C -0.177 4.177 23 N -0.553 5.553 24 Si 0.794 3.206 25 H -0.200 1.200 26 H -0.198 1.198 27 H -0.191 1.191 28 H 0.108 0.892 29 H 0.096 0.904 30 H 0.123 0.877 31 H 0.103 0.897 32 H 0.102 0.898 33 H 0.147 0.853 34 H 0.154 0.846 35 H 0.097 0.903 36 H 0.091 0.909 37 H 0.096 0.904 38 H 0.162 0.838 39 H 0.100 0.900 40 H 0.103 0.897 41 H 0.084 0.916 42 H 0.239 0.761 43 H 0.052 0.948 44 H 0.074 0.926 45 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 5.510 25.540 2.157 26.216 hybrid contribution -0.583 -0.217 -0.697 0.934 sum 4.927 25.323 1.460 25.839 Atomic orbital electron populations 1.20659 0.85070 1.04620 1.04499 1.21961 0.96119 0.86299 0.93178 1.19019 0.93854 0.89906 1.30687 1.19729 0.83292 0.84780 0.71478 1.90750 1.18490 1.84750 1.49306 1.86465 1.39197 1.16206 1.84584 1.21755 0.94723 0.76215 1.03159 1.19507 0.94040 0.93181 1.04857 1.21151 0.92027 1.00805 0.98460 1.21280 0.99481 0.93006 1.01651 1.20311 0.95831 0.94666 0.98113 1.20838 0.95156 0.97820 1.03103 1.21132 0.91304 1.00196 1.01852 1.19841 0.97430 0.91520 0.99264 1.20915 0.91228 1.02242 1.03347 1.24523 0.97771 0.91263 0.95410 1.77172 0.98237 1.14130 1.25841 1.49182 1.03358 1.07913 1.50426 1.19461 0.95597 0.71871 0.98332 1.21346 1.48130 0.98555 0.91482 0.92922 1.25711 0.93815 0.95920 1.02228 1.69980 1.44632 1.07622 1.33040 0.85414 0.78804 0.77695 0.78671 1.19953 1.19801 1.19059 0.89221 0.90351 0.87673 0.89659 0.89820 0.85289 0.84599 0.90323 0.90902 0.90440 0.83771 0.90029 0.89651 0.91598 0.76102 0.94783 0.92605 0.91614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -3.14 9.57 71.24 0.68 -2.46 16 2 C 0.16 6.50 7.01 42.17 0.30 6.79 16 3 C -0.32 -11.80 6.13 -20.16 -0.12 -11.92 16 4 C 0.56 18.57 7.95 70.20 0.56 19.13 16 5 O -0.54 -19.15 14.63 19.75 0.29 -18.86 16 6 O -0.35 -9.77 8.54 -56.73 -0.48 -10.26 16 7 C 0.11 2.67 4.58 71.24 0.33 3.00 16 8 C -0.12 -2.49 5.88 -19.86 -0.12 -2.60 16 9 C -0.11 -2.30 9.38 22.27 0.21 -2.09 16 10 C -0.14 -2.47 9.70 22.27 0.22 -2.26 16 11 C -0.09 -1.41 5.88 -19.87 -0.12 -1.53 16 12 C -0.11 -1.11 10.01 71.24 0.71 -0.40 16 13 C -0.13 -1.97 9.36 22.27 0.21 -1.76 16 14 C -0.08 -1.43 5.88 -19.86 -0.12 -1.55 16 15 C -0.12 -1.58 9.60 71.24 0.68 -0.89 16 16 C 0.10 3.46 11.87 85.67 1.02 4.47 16 17 N -0.33 -14.61 12.50 -56.24 -0.70 -15.31 16 18 N -0.33 -15.21 3.56 -336.67 -1.20 -16.41 16 19 C 0.27 13.46 5.96 85.63 0.51 13.97 16 20 C -0.56 -30.22 9.39 25.60 0.24 -29.98 16 21 H 0.05 2.93 7.81 -2.91 -0.02 2.91 16 22 C 0.03 1.33 5.46 84.66 0.46 1.79 16 23 N -0.92 -50.50 13.29 21.45 0.28 -50.22 16 24 Si 0.97 42.16 29.54 68.60 2.03 44.19 16 25 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 26 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 27 H -0.27 -11.17 7.11 99.48 0.71 -10.47 16 28 H 0.09 3.05 8.14 -2.39 -0.02 3.03 16 29 H 0.08 2.67 7.05 -2.39 -0.02 2.65 16 30 H 0.10 3.36 6.50 -2.39 -0.02 3.35 16 31 H 0.09 1.89 8.13 -2.39 -0.02 1.87 16 32 H 0.08 1.90 7.49 -2.39 -0.02 1.88 16 33 H 0.13 2.82 6.99 -2.91 -0.02 2.80 16 34 H 0.14 1.97 8.06 -2.91 -0.02 1.95 16 35 H 0.08 0.66 8.14 -2.39 -0.02 0.64 16 36 H 0.07 0.64 8.09 -2.38 -0.02 0.62 16 37 H 0.08 0.59 8.09 -2.39 -0.02 0.57 16 38 H 0.14 1.51 8.06 -2.91 -0.02 1.49 16 39 H 0.08 0.94 8.14 -2.39 -0.02 0.92 16 40 H 0.08 0.82 8.09 -2.39 -0.02 0.80 16 41 H 0.07 0.91 6.64 -2.39 -0.02 0.89 16 42 H 0.22 5.81 8.06 -2.91 -0.02 5.78 16 43 H 0.03 1.86 8.14 -2.38 -0.02 1.84 16 44 H 0.06 2.80 7.01 -2.39 -0.02 2.78 16 45 H 0.27 14.22 8.31 -92.71 -0.77 13.45 16 Total: -1.00 -64.07 383.92 6.86 -57.21 By element: Atomic # 1 Polarization: 16.94 SS G_CDS: 1.00 Total: 17.94 kcal Atomic # 6 Polarization: -13.93 SS G_CDS: 5.65 Total: -8.28 kcal Atomic # 7 Polarization: -80.32 SS G_CDS: -1.62 Total: -81.94 kcal Atomic # 8 Polarization: -28.92 SS G_CDS: -0.20 Total: -29.11 kcal Atomic # 14 Polarization: 42.16 SS G_CDS: 2.03 Total: 44.19 kcal Total: -64.07 6.86 -57.21 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000890005460.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.700 kcal (2) G-P(sol) polarization free energy of solvation -64.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.862 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.205 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds