Wall clock time and date at job start Tue Mar 31 2020 14:52:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38349 * 119.85373 * 2 1 4 4 C 1.37953 * 120.15341 * 180.02562 * 3 2 1 5 5 C 1.39611 * 119.84398 * 359.97438 * 4 3 2 6 6 C 1.47647 * 120.14403 * 179.97438 * 5 4 3 7 7 N 1.29072 * 125.87073 * 359.96754 * 6 5 4 8 8 O 1.41393 * 112.87784 * 180.33095 * 7 6 5 9 9 C 1.44202 * 107.59116 * 342.50625 * 8 7 6 10 10 H 1.09002 * 110.96927 * 267.24859 * 9 8 7 11 11 C 1.50700 * 110.97241 * 143.52018 * 9 8 7 12 12 O 1.21276 * 120.00056 * 359.49420 * 11 9 8 13 13 N 1.34777 * 120.00166 * 179.49873 * 11 9 8 14 14 C 1.46494 * 120.00146 * 179.97438 * 13 11 9 15 15 C 1.53005 * 109.47286 * 184.79393 * 14 13 11 16 16 C 1.50699 * 115.54410 * 294.81888 * 15 14 13 17 17 H 1.08002 * 119.99632 * 95.15710 * 16 15 14 18 18 C 1.37874 * 120.00554 * 275.14728 * 16 15 14 19 19 N 1.31521 * 119.99386 * 5.25575 * 18 16 15 20 20 Si 1.86793 * 120.00516 * 185.24794 * 18 16 15 21 21 H 1.48504 * 109.47561 * 180.02562 * 20 18 16 22 22 H 1.48501 * 109.46960 * 300.00535 * 20 18 16 23 23 H 1.48503 * 109.47196 * 60.00098 * 20 18 16 24 24 C 1.53001 * 117.49918 * 80.48754 * 15 14 13 25 25 C 1.52997 * 117.50080 * 149.15361 * 15 14 13 26 26 C 1.51757 * 125.85034 * 179.97438 * 6 5 4 27 27 C 1.39611 * 119.70566 * 0.24525 * 5 4 3 28 28 C 1.37952 * 119.84520 * 359.53902 * 27 5 4 29 29 H 1.09007 * 109.47044 * 90.00122 * 1 2 3 30 30 H 1.08998 * 109.47435 * 210.00512 * 1 2 3 31 31 H 1.08997 * 109.46883 * 330.00244 * 1 2 3 32 32 H 1.08006 * 119.92602 * 359.97438 * 3 2 1 33 33 H 1.07997 * 120.07918 * 179.97438 * 4 3 2 34 34 H 0.97001 * 119.99491 * 359.97438 * 13 11 9 35 35 H 1.09000 * 109.47416 * 64.78868 * 14 13 11 36 36 H 1.09008 * 109.47072 * 304.78969 * 14 13 11 37 37 H 0.97004 * 119.99687 * 174.99560 * 19 18 16 38 38 H 1.08991 * 117.49668 * 215.00178 * 24 15 14 39 39 H 1.08991 * 117.49750 * 0.02889 * 24 15 14 40 40 H 1.09001 * 117.50068 * 359.97143 * 25 15 14 41 41 H 1.09002 * 117.50141 * 144.99878 * 25 15 14 42 42 H 1.08999 * 110.78767 * 77.11337 * 26 6 5 43 43 H 1.09004 * 110.82610 * 313.62432 * 26 6 5 44 44 H 1.07996 * 120.07390 * 179.73132 * 27 5 4 45 45 H 1.07998 * 119.92683 * 180.18331 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1957 1.1999 0.0000 4 6 3.5752 1.2071 -0.0005 5 6 4.2763 -0.0002 -0.0005 6 6 5.7528 -0.0002 -0.0017 7 7 6.5091 1.0457 -0.0033 8 8 7.8868 0.7278 -0.0116 9 6 8.0189 -0.6486 0.3976 10 1 8.1772 -0.7222 1.4736 11 6 9.1311 -1.3310 -0.3562 12 8 9.7667 -0.7169 -1.1867 13 7 9.4195 -2.6239 -0.1076 14 6 10.5003 -3.2875 -0.8408 15 6 10.5409 -4.7687 -0.4595 16 6 10.8989 -5.0609 0.9749 17 1 10.1186 -5.2129 1.7060 18 6 12.2225 -5.1342 1.3540 19 7 13.1710 -4.8479 0.4891 20 14 12.6686 -5.6400 3.0960 21 1 14.1458 -5.6406 3.2484 22 1 12.0724 -4.6790 4.0584 23 1 12.1421 -7.0020 3.3662 24 6 9.5381 -5.7015 -1.1415 25 6 11.0195 -5.7591 -1.5228 26 6 6.6416 -1.2303 -0.0013 27 6 3.5751 -1.2074 -0.0052 28 6 2.1956 -1.2001 -0.0001 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3634 -0.8899 0.5139 31 1 -0.3633 0.8900 0.5138 32 1 1.6521 2.1332 -0.0004 33 1 4.1116 2.1445 -0.0010 34 1 8.9113 -3.1150 0.5569 35 1 11.4519 -2.8206 -0.5866 36 1 10.3239 -3.1929 -1.9123 37 1 14.0979 -4.8288 0.7744 38 1 9.1374 -6.5266 -0.5527 39 1 8.8498 -5.2601 -1.8621 40 1 11.3051 -5.3556 -2.4943 41 1 11.5933 -6.6221 -1.1850 42 1 6.6832 -1.6778 -0.9943 43 1 6.2994 -1.9554 0.7372 44 1 4.1114 -2.1448 -0.0096 45 1 1.6518 -2.1332 -0.0007 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000890357137.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:52:15 Heat of formation + Delta-G solvation = 26.975002 kcal Electronic energy + Delta-G solvation = -26699.937258 eV Core-core repulsion = 22877.846689 eV Total energy + Delta-G solvation = -3822.090569 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.69841 -39.54491 -38.49788 -36.71093 -34.40907 -33.50916 -32.04990 -31.84059 -31.59439 -30.83490 -27.41353 -26.65609 -25.46028 -24.06656 -22.67022 -22.60953 -21.27715 -20.24129 -19.92417 -19.40053 -17.44035 -17.35413 -16.22196 -15.98620 -15.75552 -15.54839 -15.17996 -14.91059 -14.79162 -14.41260 -14.19310 -14.03476 -13.84217 -13.58968 -13.31092 -13.12796 -12.96712 -12.71719 -12.65621 -12.29495 -12.05939 -11.73033 -11.68023 -11.62404 -11.48800 -11.05486 -10.99573 -10.84465 -10.60363 -10.34609 -10.18382 -9.72659 -9.35848 -9.34430 -9.06571 -8.67116 -8.57979 -8.40096 -8.19767 -6.14337 -4.24354 0.38569 1.02955 1.96526 2.64901 2.95582 3.22376 3.29185 3.29808 3.43302 3.57602 3.84138 4.25998 4.29638 4.38724 4.45770 4.50259 4.62157 4.75642 4.92188 5.00100 5.06930 5.14270 5.16729 5.19434 5.27653 5.30752 5.37150 5.43572 5.53884 5.65297 5.70303 5.93810 6.04090 6.08061 6.18129 6.24903 6.37884 6.46677 6.53884 6.60848 6.77409 7.02503 7.09710 7.20701 7.33726 7.40456 7.74105 8.09005 8.25382 8.65732 8.76927 9.43401 10.93418 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.016468 B = 0.002448 C = 0.002360 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1699.856469 B =11433.208014 C =11860.316445 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.069 4.069 3 C -0.125 4.125 4 C -0.075 4.075 5 C -0.045 4.045 6 C 0.123 3.877 7 N -0.284 5.284 8 O -0.161 6.161 9 C 0.026 3.974 10 H 0.113 0.887 11 C 0.509 3.491 12 O -0.530 6.530 13 N -0.695 5.695 14 C 0.163 3.837 15 C 0.028 3.972 16 C -0.504 4.504 17 H 0.060 0.940 18 C 0.074 3.926 19 N -0.873 5.873 20 Si 0.891 3.109 21 H -0.287 1.287 22 H -0.277 1.277 23 H -0.276 1.276 24 C -0.210 4.210 25 C -0.147 4.147 26 C -0.138 4.138 27 C -0.081 4.081 28 C -0.123 4.123 29 H 0.073 0.927 30 H 0.069 0.931 31 H 0.068 0.932 32 H 0.128 0.872 33 H 0.133 0.867 34 H 0.402 0.598 35 H 0.074 0.926 36 H 0.041 0.959 37 H 0.263 0.737 38 H 0.078 0.922 39 H 0.065 0.935 40 H 0.065 0.935 41 H 0.084 0.916 42 H 0.110 0.890 43 H 0.114 0.886 44 H 0.133 0.867 45 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.948 6.159 0.512 24.733 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.070 4.070 3 C -0.143 4.143 4 C -0.095 4.095 5 C -0.046 4.046 6 C -0.067 4.067 7 N -0.022 5.022 8 O -0.181 6.181 9 C -0.037 4.037 10 H 0.131 0.869 11 C 0.291 3.709 12 O -0.407 6.407 13 N -0.345 5.345 14 C 0.040 3.960 15 C 0.027 3.973 16 C -0.542 4.542 17 H 0.078 0.922 18 C -0.130 4.130 19 N -0.509 5.509 20 Si 0.719 3.281 21 H -0.212 1.212 22 H -0.202 1.202 23 H -0.202 1.202 24 C -0.247 4.247 25 C -0.185 4.185 26 C -0.177 4.177 27 C -0.101 4.101 28 C -0.141 4.141 29 H 0.092 0.908 30 H 0.088 0.912 31 H 0.087 0.913 32 H 0.146 0.854 33 H 0.151 0.849 34 H 0.236 0.764 35 H 0.092 0.908 36 H 0.059 0.941 37 H 0.073 0.927 38 H 0.097 0.903 39 H 0.083 0.917 40 H 0.084 0.916 41 H 0.103 0.897 42 H 0.128 0.872 43 H 0.132 0.868 44 H 0.151 0.849 45 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -22.947 7.788 -0.199 24.233 hybrid contribution 0.391 -1.456 1.336 2.015 sum -22.556 6.332 1.138 23.455 Atomic orbital electron populations 1.20859 0.90889 1.03098 1.02650 1.20141 0.96397 0.93170 0.97289 1.21003 0.93721 0.97904 1.01634 1.21357 0.94180 0.97595 0.96391 1.17782 0.87082 0.94428 1.05322 1.24239 0.94120 0.92726 0.95595 1.78400 0.89472 1.22117 1.12260 1.91391 1.14473 1.24852 1.87369 1.23610 0.94821 0.84400 1.00826 0.86914 1.19818 0.84478 0.82808 0.83749 1.90724 1.51361 1.64547 1.34042 1.45893 1.36699 1.09963 1.41963 1.21078 0.88846 0.93520 0.92536 1.19014 0.97786 0.86537 0.93984 1.20293 0.91687 1.50387 0.91822 0.92191 1.24998 0.96502 0.94437 0.97104 1.69962 1.00401 1.46595 1.33916 0.86679 0.77457 0.79264 0.84711 1.21231 1.20215 1.20162 1.23022 0.92573 1.04635 1.04502 1.22504 0.94468 1.03169 0.98360 1.22977 0.90488 0.98350 1.05894 1.21270 0.94321 0.97046 0.97439 1.20982 0.93685 0.97913 1.01549 0.90792 0.91228 0.91302 0.85406 0.84891 0.76422 0.90761 0.94073 0.92668 0.90295 0.91664 0.91627 0.89720 0.87198 0.86790 0.84944 0.85238 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.53 10.00 36.01 0.36 -0.17 16 2 C -0.07 -0.48 5.89 -104.53 -0.62 -1.09 16 3 C -0.12 -0.95 9.68 -39.64 -0.38 -1.33 16 4 C -0.08 -0.71 9.69 -39.17 -0.38 -1.09 16 5 C -0.04 -0.46 5.87 -105.03 -0.62 -1.07 16 6 C 0.12 1.51 7.16 -79.39 -0.57 0.94 16 7 N -0.28 -4.36 12.12 35.32 0.43 -3.93 16 8 O -0.16 -2.90 11.82 -30.24 -0.36 -3.26 16 9 C 0.03 0.39 4.23 -26.96 -0.11 0.27 16 10 H 0.11 1.45 8.14 -51.93 -0.42 1.03 16 11 C 0.51 9.55 7.13 -10.99 -0.08 9.47 16 12 O -0.53 -12.36 16.58 -13.31 -0.22 -12.58 16 13 N -0.69 -12.75 5.48 -60.29 -0.33 -13.08 16 14 C 0.16 3.57 5.50 -4.04 -0.02 3.55 16 15 C 0.03 0.62 1.39 -155.66 -0.22 0.40 16 16 C -0.50 -12.44 8.59 -34.44 -0.30 -12.74 16 17 H 0.06 1.43 7.82 -52.49 -0.41 1.02 16 18 C 0.07 1.92 5.40 -17.82 -0.10 1.82 16 19 N -0.87 -23.76 12.90 55.43 0.72 -23.04 16 20 Si 0.89 20.07 29.54 -169.99 -5.02 15.05 16 21 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 22 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 23 H -0.28 -6.16 7.11 56.52 0.40 -5.75 16 24 C -0.21 -4.12 9.96 -26.69 -0.27 -4.39 16 25 C -0.15 -3.24 9.42 -26.69 -0.25 -3.49 16 26 C -0.14 -1.56 5.81 -26.44 -0.15 -1.71 16 27 C -0.08 -0.65 9.61 -39.17 -0.38 -1.03 16 28 C -0.12 -0.86 9.68 -39.64 -0.38 -1.25 16 29 H 0.07 0.29 8.14 -51.93 -0.42 -0.13 16 30 H 0.07 0.25 8.08 -51.93 -0.42 -0.17 16 31 H 0.07 0.26 8.08 -51.93 -0.42 -0.16 16 32 H 0.13 0.71 8.06 -52.48 -0.42 0.29 16 33 H 0.13 1.27 7.84 -52.49 -0.41 0.86 16 34 H 0.40 6.44 8.33 -40.82 -0.34 6.10 16 35 H 0.07 1.89 8.14 -51.93 -0.42 1.47 16 36 H 0.04 0.90 8.09 -51.92 -0.42 0.48 16 37 H 0.26 6.94 8.32 -40.82 -0.34 6.61 16 38 H 0.08 1.51 8.14 -51.93 -0.42 1.09 16 39 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 40 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 41 H 0.08 1.99 8.14 -51.93 -0.42 1.57 16 42 H 0.11 1.25 7.90 -51.93 -0.41 0.84 16 43 H 0.11 0.91 7.97 -51.93 -0.41 0.49 16 44 H 0.13 0.84 7.38 -52.49 -0.39 0.45 16 45 H 0.13 0.63 8.06 -52.49 -0.42 0.21 16 LS Contribution 387.69 15.07 5.84 5.84 Total: -1.00 -31.84 387.69 -9.97 -41.82 By element: Atomic # 1 Polarization: 12.66 SS G_CDS: -6.57 Total: 6.09 kcal Atomic # 6 Polarization: -8.45 SS G_CDS: -4.46 Total: -12.90 kcal Atomic # 7 Polarization: -40.87 SS G_CDS: 0.81 Total: -40.06 kcal Atomic # 8 Polarization: -15.26 SS G_CDS: -0.58 Total: -15.84 kcal Atomic # 14 Polarization: 20.07 SS G_CDS: -5.02 Total: 15.05 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -31.84 -9.97 -41.82 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000890357137.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.792 kcal (2) G-P(sol) polarization free energy of solvation -31.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.950 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.817 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.975 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds