Wall clock time and date at job start Tue Mar 31 2020 14:52:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38349 * 119.85373 * 2 1 4 4 C 1.37953 * 120.15341 * 180.02562 * 3 2 1 5 5 C 1.39611 * 119.84398 * 359.97438 * 4 3 2 6 6 C 1.47647 * 120.14403 * 179.97438 * 5 4 3 7 7 N 1.29072 * 125.87073 * 359.96754 * 6 5 4 8 8 O 1.41393 * 112.87784 * 180.33095 * 7 6 5 9 9 C 1.44202 * 107.59116 * 342.50625 * 8 7 6 10 10 H 1.09002 * 110.96927 * 267.24859 * 9 8 7 11 11 C 1.50700 * 110.97241 * 143.52018 * 9 8 7 12 12 O 1.21276 * 120.00056 * 359.49420 * 11 9 8 13 13 N 1.34777 * 120.00166 * 179.49873 * 11 9 8 14 14 C 1.46494 * 120.00146 * 179.97438 * 13 11 9 15 15 C 1.53005 * 109.47286 * 184.79393 * 14 13 11 16 16 C 1.50699 * 115.54410 * 294.81888 * 15 14 13 17 17 H 1.08002 * 119.99632 * 95.15710 * 16 15 14 18 18 C 1.37874 * 120.00554 * 275.14728 * 16 15 14 19 19 N 1.31521 * 119.99386 * 5.25575 * 18 16 15 20 20 Si 1.86793 * 120.00516 * 185.24794 * 18 16 15 21 21 H 1.48504 * 109.47561 * 180.02562 * 20 18 16 22 22 H 1.48501 * 109.46960 * 300.00535 * 20 18 16 23 23 H 1.48503 * 109.47196 * 60.00098 * 20 18 16 24 24 C 1.53001 * 117.49918 * 80.48754 * 15 14 13 25 25 C 1.52997 * 117.50080 * 149.15361 * 15 14 13 26 26 C 1.51757 * 125.85034 * 179.97438 * 6 5 4 27 27 C 1.39611 * 119.70566 * 0.24525 * 5 4 3 28 28 C 1.37952 * 119.84520 * 359.53902 * 27 5 4 29 29 H 1.09007 * 109.47044 * 90.00122 * 1 2 3 30 30 H 1.08998 * 109.47435 * 210.00512 * 1 2 3 31 31 H 1.08997 * 109.46883 * 330.00244 * 1 2 3 32 32 H 1.08006 * 119.92602 * 359.97438 * 3 2 1 33 33 H 1.07997 * 120.07918 * 179.97438 * 4 3 2 34 34 H 0.97001 * 119.99491 * 359.97438 * 13 11 9 35 35 H 1.09000 * 109.47416 * 64.78868 * 14 13 11 36 36 H 1.09008 * 109.47072 * 304.78969 * 14 13 11 37 37 H 0.97004 * 119.99687 * 174.99560 * 19 18 16 38 38 H 1.08991 * 117.49668 * 215.00178 * 24 15 14 39 39 H 1.08991 * 117.49750 * 0.02889 * 24 15 14 40 40 H 1.09001 * 117.50068 * 359.97143 * 25 15 14 41 41 H 1.09002 * 117.50141 * 144.99878 * 25 15 14 42 42 H 1.08999 * 110.78767 * 77.11337 * 26 6 5 43 43 H 1.09004 * 110.82610 * 313.62432 * 26 6 5 44 44 H 1.07996 * 120.07390 * 179.73132 * 27 5 4 45 45 H 1.07998 * 119.92683 * 180.18331 * 28 27 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1957 1.1999 0.0000 4 6 3.5752 1.2071 -0.0005 5 6 4.2763 -0.0002 -0.0005 6 6 5.7528 -0.0002 -0.0017 7 7 6.5091 1.0457 -0.0033 8 8 7.8868 0.7278 -0.0116 9 6 8.0189 -0.6486 0.3976 10 1 8.1772 -0.7222 1.4736 11 6 9.1311 -1.3310 -0.3562 12 8 9.7667 -0.7169 -1.1867 13 7 9.4195 -2.6239 -0.1076 14 6 10.5003 -3.2875 -0.8408 15 6 10.5409 -4.7687 -0.4595 16 6 10.8989 -5.0609 0.9749 17 1 10.1186 -5.2129 1.7060 18 6 12.2225 -5.1342 1.3540 19 7 13.1710 -4.8479 0.4891 20 14 12.6686 -5.6400 3.0960 21 1 14.1458 -5.6406 3.2484 22 1 12.0724 -4.6790 4.0584 23 1 12.1421 -7.0020 3.3662 24 6 9.5381 -5.7015 -1.1415 25 6 11.0195 -5.7591 -1.5228 26 6 6.6416 -1.2303 -0.0013 27 6 3.5751 -1.2074 -0.0052 28 6 2.1956 -1.2001 -0.0001 29 1 -0.3633 0.0000 -1.0277 30 1 -0.3634 -0.8899 0.5139 31 1 -0.3633 0.8900 0.5138 32 1 1.6521 2.1332 -0.0004 33 1 4.1116 2.1445 -0.0010 34 1 8.9113 -3.1150 0.5569 35 1 11.4519 -2.8206 -0.5866 36 1 10.3239 -3.1929 -1.9123 37 1 14.0979 -4.8288 0.7744 38 1 9.1374 -6.5266 -0.5527 39 1 8.8498 -5.2601 -1.8621 40 1 11.3051 -5.3556 -2.4943 41 1 11.5933 -6.6221 -1.1850 42 1 6.6832 -1.6778 -0.9943 43 1 6.2994 -1.9554 0.7372 44 1 4.1114 -2.1448 -0.0096 45 1 1.6518 -2.1332 -0.0007 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000890357137.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:52:15 Heat of formation + Delta-G solvation = 9.011947 kcal Electronic energy + Delta-G solvation = -26700.716195 eV Core-core repulsion = 22877.846689 eV Total energy + Delta-G solvation = -3822.869506 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 328.157 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.82044 -40.43891 -39.74361 -38.42477 -35.30548 -35.06908 -33.97396 -32.60199 -32.42965 -31.74088 -28.32762 -27.92536 -27.27179 -25.28358 -23.34126 -23.29209 -22.94579 -21.54736 -21.24060 -20.82261 -18.87166 -18.36041 -17.85805 -17.01467 -16.77408 -16.63392 -16.60284 -16.14014 -15.94121 -15.85244 -15.24028 -15.08687 -14.70198 -14.56834 -14.39030 -14.28791 -14.04089 -13.98873 -13.66482 -13.47811 -13.13800 -12.98634 -12.93469 -12.79286 -12.73572 -12.39247 -12.30751 -12.12398 -12.02551 -11.68969 -11.52452 -11.31484 -10.87950 -10.75244 -10.45829 -10.10531 -9.92396 -9.91930 -9.40479 -8.09732 -6.23462 -0.34732 0.45537 1.16006 1.36319 1.44624 1.46118 1.52206 1.58762 2.33391 2.43340 2.82148 2.84603 3.19045 3.28375 3.31772 3.47004 3.70063 3.87655 3.96904 3.99415 4.07351 4.23687 4.34268 4.41935 4.47799 4.51674 4.55019 4.63872 4.65345 4.71345 4.84545 4.88847 4.91462 4.98960 5.02677 5.13511 5.28428 5.29419 5.42530 5.43373 5.48487 5.58100 5.65473 5.66339 5.77974 5.98913 6.17193 6.35890 6.60169 6.85064 7.19305 7.47052 8.97583 Molecular weight = 328.16amu Principal moments of inertia in cm(-1) A = 0.016468 B = 0.002448 C = 0.002360 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1699.856469 B =11433.208014 C =11860.316445 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.064 4.064 3 C -0.132 4.132 4 C -0.089 4.089 5 C -0.073 4.073 6 C 0.146 3.854 7 N -0.322 5.322 8 O -0.209 6.209 9 C 0.028 3.972 10 H 0.136 0.864 11 C 0.510 3.490 12 O -0.583 6.583 13 N -0.682 5.682 14 C 0.177 3.823 15 C 0.006 3.994 16 C -0.504 4.504 17 H 0.070 0.930 18 C 0.023 3.977 19 N -0.910 5.910 20 Si 0.949 3.051 21 H -0.296 1.296 22 H -0.270 1.270 23 H -0.268 1.268 24 C -0.170 4.170 25 C -0.163 4.163 26 C -0.130 4.130 27 C -0.075 4.075 28 C -0.127 4.127 29 H 0.082 0.918 30 H 0.081 0.919 31 H 0.076 0.924 32 H 0.144 0.856 33 H 0.121 0.879 34 H 0.416 0.584 35 H 0.029 0.971 36 H 0.039 0.961 37 H 0.258 0.742 38 H 0.090 0.910 39 H 0.091 0.909 40 H 0.068 0.932 41 H 0.063 0.937 42 H 0.114 0.886 43 H 0.159 0.841 44 H 0.154 0.846 45 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.057 4.501 1.642 28.463 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.065 4.065 3 C -0.150 4.150 4 C -0.109 4.109 5 C -0.075 4.075 6 C -0.042 4.042 7 N -0.065 5.065 8 O -0.225 6.225 9 C -0.034 4.034 10 H 0.153 0.847 11 C 0.295 3.705 12 O -0.464 6.464 13 N -0.333 5.333 14 C 0.053 3.947 15 C 0.005 3.995 16 C -0.541 4.541 17 H 0.088 0.912 18 C -0.178 4.178 19 N -0.547 5.547 20 Si 0.775 3.225 21 H -0.222 1.222 22 H -0.195 1.195 23 H -0.193 1.193 24 C -0.207 4.207 25 C -0.202 4.202 26 C -0.169 4.169 27 C -0.095 4.095 28 C -0.145 4.145 29 H 0.101 0.899 30 H 0.100 0.900 31 H 0.094 0.906 32 H 0.162 0.838 33 H 0.139 0.861 34 H 0.253 0.747 35 H 0.047 0.953 36 H 0.057 0.943 37 H 0.067 0.933 38 H 0.108 0.892 39 H 0.109 0.891 40 H 0.086 0.914 41 H 0.082 0.918 42 H 0.132 0.868 43 H 0.177 0.823 44 H 0.172 0.828 45 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -27.077 6.102 0.964 27.773 hybrid contribution 1.466 -0.947 0.943 1.984 sum -25.611 5.154 1.907 26.194 Atomic orbital electron populations 1.20934 0.88951 1.04159 1.03473 1.20534 0.97877 0.92860 0.95252 1.21232 0.93005 0.99276 1.01452 1.21421 0.95188 0.97205 0.97062 1.17886 0.85767 0.95664 1.08140 1.24704 0.95096 0.92384 0.92031 1.78460 0.88258 1.23253 1.16565 1.91355 1.16832 1.26114 1.88232 1.23645 0.95050 0.83685 1.01057 0.84668 1.20504 0.84662 0.82403 0.82948 1.90695 1.53474 1.65665 1.36526 1.45679 1.35743 1.10023 1.41820 1.20649 0.87982 0.93307 0.92721 1.19015 1.00319 0.86805 0.93353 1.20676 0.91693 1.48692 0.93087 0.91183 1.25733 0.96846 0.94870 1.00343 1.70105 1.00358 1.48630 1.35603 0.85756 0.76520 0.79242 0.80950 1.22228 1.19491 1.19309 1.23019 0.91223 1.03126 1.03324 1.22448 0.96750 1.02542 0.98412 1.23067 0.87896 0.98549 1.07404 1.21542 0.94948 0.96897 0.96126 1.21351 0.93418 0.99048 1.00658 0.89928 0.89965 0.90556 0.83777 0.86141 0.74678 0.95273 0.94286 0.93315 0.89157 0.89060 0.91386 0.91815 0.86821 0.82318 0.82820 0.82614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.62 10.00 71.24 0.71 0.09 16 2 C -0.06 -0.68 5.89 -19.81 -0.12 -0.80 16 3 C -0.13 -1.74 9.68 22.23 0.22 -1.53 16 4 C -0.09 -1.61 9.69 22.53 0.22 -1.39 16 5 C -0.07 -1.36 5.87 -20.13 -0.12 -1.47 16 6 C 0.15 3.43 7.16 45.79 0.33 3.76 16 7 N -0.32 -10.09 12.12 -42.18 -0.51 -10.60 16 8 O -0.21 -7.76 11.82 -20.28 -0.24 -8.00 16 9 C 0.03 0.81 4.23 30.44 0.13 0.94 16 10 H 0.14 3.28 8.14 -2.39 -0.02 3.26 16 11 C 0.51 19.25 7.13 87.66 0.63 19.88 16 12 O -0.58 -28.32 16.58 15.02 0.25 -28.07 16 13 N -0.68 -24.52 5.48 -463.06 -2.54 -27.06 16 14 C 0.18 7.87 5.50 86.38 0.48 8.35 16 15 C 0.01 0.26 1.39 -52.93 -0.07 0.18 16 16 C -0.50 -24.37 8.59 25.60 0.22 -24.15 16 17 H 0.07 3.18 7.82 -2.91 -0.02 3.16 16 18 C 0.02 1.18 5.40 84.65 0.46 1.63 16 19 N -0.91 -50.80 12.90 21.45 0.28 -50.52 16 20 Si 0.95 41.06 29.54 68.60 2.03 43.08 16 21 H -0.30 -13.15 7.11 99.48 0.71 -12.45 16 22 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 23 H -0.27 -11.15 7.11 99.48 0.71 -10.45 16 24 C -0.17 -6.20 9.96 30.62 0.30 -5.89 16 25 C -0.16 -7.15 9.42 30.62 0.29 -6.86 16 26 C -0.13 -2.63 5.81 30.78 0.18 -2.45 16 27 C -0.08 -0.95 9.61 22.53 0.22 -0.74 16 28 C -0.13 -1.28 9.68 22.23 0.22 -1.07 16 29 H 0.08 0.34 8.14 -2.38 -0.02 0.32 16 30 H 0.08 0.26 8.08 -2.39 -0.02 0.24 16 31 H 0.08 0.31 8.08 -2.39 -0.02 0.29 16 32 H 0.14 1.32 8.06 -2.91 -0.02 1.30 16 33 H 0.12 2.40 7.84 -2.91 -0.02 2.38 16 34 H 0.42 12.41 8.33 -92.71 -0.77 11.64 16 35 H 0.03 1.55 8.14 -2.39 -0.02 1.53 16 36 H 0.04 1.73 8.09 -2.38 -0.02 1.71 16 37 H 0.26 14.06 8.32 -92.71 -0.77 13.29 16 38 H 0.09 3.12 8.14 -2.39 -0.02 3.10 16 39 H 0.09 2.89 8.14 -2.39 -0.02 2.87 16 40 H 0.07 2.89 8.14 -2.39 -0.02 2.87 16 41 H 0.06 3.03 8.14 -2.39 -0.02 3.01 16 42 H 0.11 2.30 7.90 -2.39 -0.02 2.28 16 43 H 0.16 1.77 7.97 -2.39 -0.02 1.75 16 44 H 0.15 1.21 7.38 -2.91 -0.02 1.19 16 45 H 0.16 0.75 8.06 -2.91 -0.02 0.73 16 Total: -1.00 -73.02 387.69 3.77 -69.25 By element: Atomic # 1 Polarization: 23.21 SS G_CDS: 0.23 Total: 23.45 kcal Atomic # 6 Polarization: -15.80 SS G_CDS: 4.28 Total: -11.53 kcal Atomic # 7 Polarization: -85.41 SS G_CDS: -2.77 Total: -88.18 kcal Atomic # 8 Polarization: -36.08 SS G_CDS: 0.01 Total: -36.07 kcal Atomic # 14 Polarization: 41.06 SS G_CDS: 2.03 Total: 43.08 kcal Total: -73.02 3.77 -69.25 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000890357137.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.261 kcal (2) G-P(sol) polarization free energy of solvation -73.021 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.772 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.249 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds